Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05680

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05679 and H281DRAFT_05680 are separated by 1 nucleotidesH281DRAFT_05680 and H281DRAFT_05681 are separated by 212 nucleotides H281DRAFT_05679: H281DRAFT_05679 - SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase, at 95,388 to 96,230 _05679 H281DRAFT_05680: H281DRAFT_05680 - hypothetical protein, at 96,232 to 96,786 _05680 H281DRAFT_05681: H281DRAFT_05681 - transcriptional regulator, TetR family, at 96,999 to 97,667 _05681 Position (kb) 96 97Strain fitness (log2 ratio) -2 -1 0 1at 95.508 kb on + strand, within H281DRAFT_05679at 95.508 kb on + strand, within H281DRAFT_05679at 95.509 kb on - strand, within H281DRAFT_05679at 95.509 kb on - strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strandat 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.601 kb on + strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.602 kb on - strand, within H281DRAFT_05679at 95.605 kb on + strand, within H281DRAFT_05679at 95.606 kb on - strand, within H281DRAFT_05679at 95.606 kb on - strand, within H281DRAFT_05679at 95.606 kb on - strand, within H281DRAFT_05679at 95.612 kb on + strand, within H281DRAFT_05679at 95.613 kb on - strand, within H281DRAFT_05679at 95.613 kb on - strand, within H281DRAFT_05679at 95.619 kb on + strand, within H281DRAFT_05679at 95.619 kb on + strand, within H281DRAFT_05679at 95.619 kb on + strand, within H281DRAFT_05679at 95.620 kb on - strand, within H281DRAFT_05679at 95.620 kb on - strand, within H281DRAFT_05679at 95.620 kb on - strand, within H281DRAFT_05679at 95.673 kb on + strand, within H281DRAFT_05679at 95.674 kb on - strand, within H281DRAFT_05679at 95.674 kb on - strand, within H281DRAFT_05679at 95.744 kb on + strandat 95.744 kb on + strand, within H281DRAFT_05679at 95.744 kb on + strand, within H281DRAFT_05679at 95.745 kb on - strandat 95.778 kb on - strand, within H281DRAFT_05679at 95.780 kb on + strand, within H281DRAFT_05679at 95.780 kb on + strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.781 kb on - strand, within H281DRAFT_05679at 95.837 kb on + strand, within H281DRAFT_05679at 95.886 kb on + strand, within H281DRAFT_05679at 95.887 kb on - strand, within H281DRAFT_05679at 95.887 kb on - strand, within H281DRAFT_05679at 95.888 kb on + strand, within H281DRAFT_05679at 95.948 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.992 kb on + strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.993 kb on - strand, within H281DRAFT_05679at 95.996 kb on + strand, within H281DRAFT_05679at 95.997 kb on - strand, within H281DRAFT_05679at 95.997 kb on - strand, within H281DRAFT_05679at 96.020 kb on + strand, within H281DRAFT_05679at 96.020 kb on + strand, within H281DRAFT_05679at 96.021 kb on - strand, within H281DRAFT_05679at 96.245 kb on - strandat 96.249 kb on + strandat 96.299 kb on + strand, within H281DRAFT_05680at 96.300 kb on - strand, within H281DRAFT_05680at 96.300 kb on - strand, within H281DRAFT_05680at 96.342 kb on + strand, within H281DRAFT_05680at 96.342 kb on + strand, within H281DRAFT_05680at 96.342 kb on + strand, within H281DRAFT_05680at 96.343 kb on - strand, within H281DRAFT_05680at 96.393 kb on - strand, within H281DRAFT_05680at 96.393 kb on - strand, within H281DRAFT_05680at 96.393 kb on - strand, within H281DRAFT_05680at 96.432 kb on - strand, within H281DRAFT_05680at 96.517 kb on - strand, within H281DRAFT_05680at 96.518 kb on + strand, within H281DRAFT_05680at 96.518 kb on + strand, within H281DRAFT_05680at 96.519 kb on - strand, within H281DRAFT_05680at 96.519 kb on - strand, within H281DRAFT_05680at 96.519 kb on - strand, within H281DRAFT_05680at 96.535 kb on + strand, within H281DRAFT_05680at 96.536 kb on - strand, within H281DRAFT_05680at 96.564 kb on + strand, within H281DRAFT_05680at 96.565 kb on - strand, within H281DRAFT_05680at 96.718 kb on + strand, within H281DRAFT_05680at 96.719 kb on - strand, within H281DRAFT_05680at 96.827 kb on + strandat 96.959 kb on + strandat 96.959 kb on + strandat 96.959 kb on + strandat 96.959 kb on + strandat 96.960 kb on - strandat 96.961 kb on + strandat 96.961 kb on + strandat 96.961 kb on + strandat 96.961 kb on + strandat 96.962 kb on - strandat 96.962 kb on - strandat 96.962 kb on - strandat 96.962 kb on - strandat 97.035 kb on - strandat 97.087 kb on + strand, within H281DRAFT_05681at 97.088 kb on - strand, within H281DRAFT_05681at 97.105 kb on + strand, within H281DRAFT_05681at 97.105 kb on + strand, within H281DRAFT_05681at 97.176 kb on + strand, within H281DRAFT_05681at 97.177 kb on - strand, within H281DRAFT_05681at 97.328 kb on - strand, within H281DRAFT_05681at 97.328 kb on - strand, within H281DRAFT_05681at 97.384 kb on + strand, within H281DRAFT_05681at 97.417 kb on + strand, within H281DRAFT_05681at 97.418 kb on - strand, within H281DRAFT_05681at 97.456 kb on + strand, within H281DRAFT_05681at 97.634 kb on + strandat 97.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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95,508 + H281DRAFT_05679 0.14 +0.0
95,508 + H281DRAFT_05679 0.14 +0.0
95,509 - H281DRAFT_05679 0.14 -0.1
95,509 - H281DRAFT_05679 0.14 +0.6
95,601 + H281DRAFT_05679 0.25 +0.4
95,601 + +0.2
95,601 + H281DRAFT_05679 0.25 +0.6
95,601 + H281DRAFT_05679 0.25 +1.2
95,601 + H281DRAFT_05679 0.25 -0.3
95,601 + H281DRAFT_05679 0.25 +0.4
95,602 - H281DRAFT_05679 0.25 -0.1
95,602 - H281DRAFT_05679 0.25 +0.2
95,602 - H281DRAFT_05679 0.25 -1.2
95,602 - H281DRAFT_05679 0.25 +0.5
95,605 + H281DRAFT_05679 0.26 +0.1
95,606 - H281DRAFT_05679 0.26 +0.8
95,606 - H281DRAFT_05679 0.26 +0.5
95,606 - H281DRAFT_05679 0.26 +0.8
95,612 + H281DRAFT_05679 0.27 -0.2
95,613 - H281DRAFT_05679 0.27 -0.4
95,613 - H281DRAFT_05679 0.27 -0.0
95,619 + H281DRAFT_05679 0.27 +0.1
95,619 + H281DRAFT_05679 0.27 -0.5
95,619 + H281DRAFT_05679 0.27 +0.4
95,620 - H281DRAFT_05679 0.28 +1.3
95,620 - H281DRAFT_05679 0.28 +0.1
95,620 - H281DRAFT_05679 0.28 -0.1
95,673 + H281DRAFT_05679 0.34 +0.7
95,674 - H281DRAFT_05679 0.34 +0.2
95,674 - H281DRAFT_05679 0.34 -0.3
95,744 + -0.8
95,744 + H281DRAFT_05679 0.42 +0.6
95,744 + H281DRAFT_05679 0.42 +0.2
95,745 - +1.2
95,778 - H281DRAFT_05679 0.46 +0.3
95,780 + H281DRAFT_05679 0.47 -0.4
95,780 + H281DRAFT_05679 0.47 -0.4
95,781 - H281DRAFT_05679 0.47 +0.4
95,781 - H281DRAFT_05679 0.47 +0.3
95,781 - H281DRAFT_05679 0.47 +0.3
95,781 - H281DRAFT_05679 0.47 +0.4
95,781 - H281DRAFT_05679 0.47 -0.1
95,837 + H281DRAFT_05679 0.53 +0.7
95,886 + H281DRAFT_05679 0.59 +0.4
95,887 - H281DRAFT_05679 0.59 -0.2
95,887 - H281DRAFT_05679 0.59 +0.1
95,888 + H281DRAFT_05679 0.59 +0.2
95,948 + H281DRAFT_05679 0.66 -0.5
95,992 + H281DRAFT_05679 0.72 +0.5
95,992 + H281DRAFT_05679 0.72 -0.3
95,992 + H281DRAFT_05679 0.72 -0.4
95,992 + H281DRAFT_05679 0.72 -0.6
95,993 - H281DRAFT_05679 0.72 +0.2
95,993 - H281DRAFT_05679 0.72 -0.4
95,993 - H281DRAFT_05679 0.72 +0.7
95,993 - H281DRAFT_05679 0.72 +0.1
95,996 + H281DRAFT_05679 0.72 -1.1
95,997 - H281DRAFT_05679 0.72 -0.8
95,997 - H281DRAFT_05679 0.72 +0.5
96,020 + H281DRAFT_05679 0.75 +0.7
96,020 + H281DRAFT_05679 0.75 -0.1
96,021 - H281DRAFT_05679 0.75 +0.6
96,245 - -0.6
96,249 + -1.5
96,299 + H281DRAFT_05680 0.12 +0.3
96,300 - H281DRAFT_05680 0.12 -0.7
96,300 - H281DRAFT_05680 0.12 -0.4
96,342 + H281DRAFT_05680 0.20 -0.3
96,342 + H281DRAFT_05680 0.20 +0.1
96,342 + H281DRAFT_05680 0.20 +0.3
96,343 - H281DRAFT_05680 0.20 +0.5
96,393 - H281DRAFT_05680 0.29 -0.2
96,393 - H281DRAFT_05680 0.29 +0.5
96,393 - H281DRAFT_05680 0.29 -0.7
96,432 - H281DRAFT_05680 0.36 +0.3
96,517 - H281DRAFT_05680 0.51 +0.1
96,518 + H281DRAFT_05680 0.52 +0.0
96,518 + H281DRAFT_05680 0.52 -0.2
96,519 - H281DRAFT_05680 0.52 -0.3
96,519 - H281DRAFT_05680 0.52 -0.5
96,519 - H281DRAFT_05680 0.52 -0.2
96,535 + H281DRAFT_05680 0.55 -0.1
96,536 - H281DRAFT_05680 0.55 -0.0
96,564 + H281DRAFT_05680 0.60 -0.6
96,565 - H281DRAFT_05680 0.60 -0.3
96,718 + H281DRAFT_05680 0.88 -1.1
96,719 - H281DRAFT_05680 0.88 +0.2
96,827 + +1.2
96,959 + +0.2
96,959 + -0.2
96,959 + -0.9
96,959 + -0.3
96,960 - +1.4
96,961 + -0.0
96,961 + -1.7
96,961 + -0.2
96,961 + -0.7
96,962 - -0.3
96,962 - +1.0
96,962 - -0.6
96,962 - -0.6
97,035 - -1.9
97,087 + H281DRAFT_05681 0.13 -0.9
97,088 - H281DRAFT_05681 0.13 -0.9
97,105 + H281DRAFT_05681 0.16 -1.3
97,105 + H281DRAFT_05681 0.16 -0.7
97,176 + H281DRAFT_05681 0.26 -1.4
97,177 - H281DRAFT_05681 0.27 -2.0
97,328 - H281DRAFT_05681 0.49 -1.5
97,328 - H281DRAFT_05681 0.49 -1.1
97,384 + H281DRAFT_05681 0.58 -2.0
97,417 + H281DRAFT_05681 0.62 -0.9
97,418 - H281DRAFT_05681 0.63 -1.6
97,456 + H281DRAFT_05681 0.68 -1.4
97,634 + +0.6
97,770 + +1.3

Or see this region's nucleotide sequence