Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03709 and H281DRAFT_03710 are separated by 71 nucleotides H281DRAFT_03710 and H281DRAFT_03711 are separated by 2 nucleotides
H281DRAFT_03709: H281DRAFT_03709 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 223,167 to 224,441
_03709
H281DRAFT_03710: H281DRAFT_03710 - Nitrate/nitrite transporter NarK, at 224,513 to 225,820
_03710
H281DRAFT_03711: H281DRAFT_03711 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 225,823 to 226,953
_03711
Position (kb) 224
225
226 Strain fitness (log2 ratio) -1
0
1 at 223.566 kb on + strand, within H281DRAFT_03709 at 223.567 kb on - strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.870 kb on - strand, within H281DRAFT_03709 at 224.106 kb on + strand, within H281DRAFT_03709 at 224.222 kb on + strand, within H281DRAFT_03709 at 224.500 kb on + strand at 224.500 kb on + strand at 224.636 kb on + strand at 224.637 kb on - strand at 225.115 kb on - strand, within H281DRAFT_03710 at 225.115 kb on - strand, within H281DRAFT_03710 at 225.490 kb on + strand, within H281DRAFT_03710 at 225.491 kb on - strand, within H281DRAFT_03710 at 225.514 kb on - strand, within H281DRAFT_03710 at 225.695 kb on + strand at 225.695 kb on + strand at 225.695 kb on + strand at 225.790 kb on - strand at 225.797 kb on + strand at 225.955 kb on + strand, within H281DRAFT_03711 at 225.956 kb on - strand, within H281DRAFT_03711 at 226.082 kb on - strand, within H281DRAFT_03711 at 226.113 kb on + strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.472 kb on - strand, within H281DRAFT_03711 at 226.509 kb on - strand at 226.509 kb on - strand, within H281DRAFT_03711 at 226.510 kb on + strand, within H281DRAFT_03711 at 226.511 kb on - strand, within H281DRAFT_03711 at 226.660 kb on + strand, within H281DRAFT_03711 at 226.770 kb on + strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 223,566 + H281DRAFT_03709 0.31 -0.1 223,567 - H281DRAFT_03709 0.31 +0.3 223,620 + H281DRAFT_03709 0.36 -0.9 223,620 + H281DRAFT_03709 0.36 +0.1 223,620 + H281DRAFT_03709 0.36 -0.3 223,620 + H281DRAFT_03709 0.36 -0.2 223,620 + H281DRAFT_03709 0.36 +0.1 223,621 - H281DRAFT_03709 0.36 +0.6 223,621 - H281DRAFT_03709 0.36 -0.2 223,621 - H281DRAFT_03709 0.36 -0.5 223,621 - H281DRAFT_03709 0.36 -0.6 223,621 - H281DRAFT_03709 0.36 -1.1 223,621 - H281DRAFT_03709 0.36 +0.3 223,622 + H281DRAFT_03709 0.36 -0.2 223,622 + H281DRAFT_03709 0.36 -0.9 223,622 + H281DRAFT_03709 0.36 +0.1 223,870 - H281DRAFT_03709 0.55 -1.5 224,106 + H281DRAFT_03709 0.74 -0.5 224,222 + H281DRAFT_03709 0.83 +0.4 224,500 + +0.3 224,500 + -0.8 224,636 + -0.2 224,637 - +0.5 225,115 - H281DRAFT_03710 0.46 -0.0 225,115 - H281DRAFT_03710 0.46 +1.1 225,490 + H281DRAFT_03710 0.75 +0.1 225,491 - H281DRAFT_03710 0.75 +0.1 225,514 - H281DRAFT_03710 0.77 -0.4 225,695 + +0.7 225,695 + +0.0 225,695 + +0.5 225,790 - -1.5 225,797 + +0.6 225,955 + H281DRAFT_03711 0.12 +0.3 225,956 - H281DRAFT_03711 0.12 +0.9 226,082 - H281DRAFT_03711 0.23 +0.6 226,113 + H281DRAFT_03711 0.26 +0.3 226,196 - H281DRAFT_03711 0.33 -0.1 226,196 - H281DRAFT_03711 0.33 +0.7 226,196 - H281DRAFT_03711 0.33 -0.0 226,472 - H281DRAFT_03711 0.57 -0.3 226,509 - +0.1 226,509 - H281DRAFT_03711 0.61 -0.0 226,510 + H281DRAFT_03711 0.61 -0.8 226,511 - H281DRAFT_03711 0.61 -0.1 226,660 + H281DRAFT_03711 0.74 -0.2 226,770 + H281DRAFT_03711 0.84 -0.3 226,771 - H281DRAFT_03711 0.84 +0.0 226,771 - H281DRAFT_03711 0.84 +0.4 226,771 - H281DRAFT_03711 0.84 +0.3 226,771 - H281DRAFT_03711 0.84 -0.0
Or see this region's nucleotide sequence