Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3985

Experiment: Choline Lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 5 mM
4,098,521	+				-1.2
4,098,521	+		Ga0059261_3983	0.42	+0.5
4,098,522	-		Ga0059261_3983	0.42	+0.3
4,098,522	-		Ga0059261_3983	0.42	-1.0
4,098,551	+		Ga0059261_3983	0.46	-0.2
4,098,552	-		Ga0059261_3983	0.47	-0.1
4,098,656	+		Ga0059261_3983	0.61	+0.9
4,098,657	-		Ga0059261_3983	0.61	-1.5
4,098,657	-		Ga0059261_3983	0.61	-1.0
4,098,657	-		Ga0059261_3983	0.61	+0.4
4,098,686	+		Ga0059261_3983	0.65	-0.8
4,098,686	+		Ga0059261_3983	0.65	+0.5
4,098,686	+		Ga0059261_3983	0.65	+0.1
4,098,686	+		Ga0059261_3983	0.65	+0.6
4,098,686	+		Ga0059261_3983	0.65	+1.0
4,098,687	-		Ga0059261_3983	0.65	-1.5
4,098,687	-		Ga0059261_3983	0.65	-0.2
4,098,688	+		Ga0059261_3983	0.65	+1.3
4,098,688	+		Ga0059261_3983	0.65	+1.6
4,098,688	+		Ga0059261_3983	0.65	-0.2
4,098,688	+		Ga0059261_3983	0.65	+1.3
4,098,688	+		Ga0059261_3983	0.65	+1.1
4,098,688	+		Ga0059261_3983	0.65	-0.4
4,098,688	+		Ga0059261_3983	0.65	-0.8
4,098,688	+		Ga0059261_3983	0.65	+0.4
4,098,689	-				+1.1
4,098,689	-		Ga0059261_3983	0.66	-1.4
4,098,689	-		Ga0059261_3983	0.66	+0.3
4,098,689	-		Ga0059261_3983	0.66	+0.9
4,098,689	-		Ga0059261_3983	0.66	+0.4
4,098,689	-		Ga0059261_3983	0.66	+0.3
4,098,689	-		Ga0059261_3983	0.66	+0.2
4,098,689	-		Ga0059261_3983	0.66	+0.4
4,098,689	-		Ga0059261_3983	0.66	+0.0
4,098,758	+		Ga0059261_3983	0.75	-0.8
4,098,758	+		Ga0059261_3983	0.75	+0.8
4,098,758	+		Ga0059261_3983	0.75	+0.6
4,098,758	+		Ga0059261_3983	0.75	+0.1
4,098,758	+		Ga0059261_3983	0.75	-0.1
4,098,759	-		Ga0059261_3983	0.75	-0.5
4,098,759	-		Ga0059261_3983	0.75	-0.8
4,098,759	-		Ga0059261_3983	0.75	+0.4
4,098,759	-		Ga0059261_3983	0.75	+0.7
4,098,759	-		Ga0059261_3983	0.75	+0.3
4,098,759	-		Ga0059261_3983	0.75	-0.9
4,098,759	-		Ga0059261_3983	0.75	+0.3
4,098,759	-		Ga0059261_3983	0.75	-0.2
4,098,759	-		Ga0059261_3983	0.75	+0.4
4,098,761	+		Ga0059261_3983	0.76	+0.5
4,098,762	-		Ga0059261_3983	0.76	+0.1
4,098,845	+		Ga0059261_3983	0.87	-0.3
4,098,845	+		Ga0059261_3983	0.87	+0.8
4,098,845	+		Ga0059261_3983	0.87	+0.1
4,098,845	+		Ga0059261_3983	0.87	+0.0
4,098,845	+		Ga0059261_3983	0.87	-0.1
4,098,846	-		Ga0059261_3983	0.87	-0.5
4,098,846	-		Ga0059261_3983	0.87	+0.9
4,098,846	-		Ga0059261_3983	0.87	+0.3
4,098,846	-		Ga0059261_3983	0.87	+0.6
4,098,846	-		Ga0059261_3983	0.87	-0.7
4,098,875	+				+0.6
4,098,875	+				-0.0
4,098,876	-				-0.0
4,098,876	-				+0.5
4,098,876	-				+0.1
4,098,876	-				-0.1
4,098,899	+				+0.5
4,098,899	+				-2.1
4,098,899	+				-0.4
4,098,900	-				-0.0
4,098,900	-				-0.5
4,098,900	-				+0.1
4,098,901	+				-0.0
4,098,901	+				+0.1
4,098,901	+				+1.0
4,098,901	+				+0.2
4,098,901	+				+0.3
4,098,901	+				+1.3
4,098,901	+				-1.0
4,098,902	-				-0.0
4,098,902	-				-0.5
4,098,902	-				-0.7
4,098,902	-				-0.9
4,098,902	-				+0.1
4,098,902	-				-0.1
4,098,902	-				-1.2
4,098,902	-				+0.4
4,099,061	-		Ga0059261_3984	0.29	-0.7
4,099,061	-		Ga0059261_3984	0.29	+0.7
4,099,077	+		Ga0059261_3984	0.33	+0.9
4,099,077	+		Ga0059261_3984	0.33	+0.1
4,099,077	+		Ga0059261_3984	0.33	-0.1
4,099,078	-		Ga0059261_3984	0.33	+0.3
4,099,078	-		Ga0059261_3984	0.33	-0.8
4,099,078	-		Ga0059261_3984	0.33	+0.1
4,099,078	-		Ga0059261_3984	0.33	+0.2
4,099,152	+		Ga0059261_3984	0.51	+0.0
4,099,153	-		Ga0059261_3984	0.51	-0.0
4,099,153	-		Ga0059261_3984	0.51	-0.5
4,099,153	-		Ga0059261_3984	0.51	-0.9
4,099,153	-		Ga0059261_3984	0.51	-0.1
4,099,153	-		Ga0059261_3984	0.51	-1.2
4,099,236	+				+1.1
4,099,237	-		Ga0059261_3984	0.71	-0.5
4,099,293	+		Ga0059261_3984	0.85	+1.7
4,099,293	+		Ga0059261_3984	0.85	+0.1
4,099,293	+		Ga0059261_3984	0.85	+1.0
4,099,293	+		Ga0059261_3984	0.85	+1.9
4,099,293	+		Ga0059261_3984	0.85	-0.1
4,099,293	+		Ga0059261_3984	0.85	-0.9
4,099,294	-		Ga0059261_3984	0.85	+1.4
4,099,294	-		Ga0059261_3984	0.85	-0.5
4,099,294	-		Ga0059261_3984	0.85	-0.1
4,099,378	+				-1.2
4,099,379	-				-1.0
4,099,379	-				-0.0
4,099,421	+		Ga0059261_3985	0.16	+0.6
4,099,421	+		Ga0059261_3985	0.16	-0.0
4,099,421	+		Ga0059261_3985	0.16	+0.3
4,099,421	+		Ga0059261_3985	0.16	-0.3
4,099,421	+		Ga0059261_3985	0.16	+0.0
4,099,422	-		Ga0059261_3985	0.16	+0.4
4,099,422	-		Ga0059261_3985	0.16	+0.6
4,099,422	-		Ga0059261_3985	0.16	+0.4
4,099,489	-		Ga0059261_3985	0.32	+1.3
4,099,604	+		Ga0059261_3985	0.59	+0.9
4,099,604	+		Ga0059261_3985	0.59	+0.0
4,099,604	+		Ga0059261_3985	0.59	+0.1
4,099,604	+		Ga0059261_3985	0.59	+0.3
4,099,604	+		Ga0059261_3985	0.59	+1.1
4,099,605	-		Ga0059261_3985	0.59	+1.3
4,099,605	-		Ga0059261_3985	0.59	-0.9
4,099,605	-		Ga0059261_3985	0.59	+0.8
4,099,605	-		Ga0059261_3985	0.59	-0.1
4,099,723	+		Ga0059261_3985	0.87	-0.9
4,099,724	-		Ga0059261_3985	0.87	+1.1
4,099,876	+				+0.3
4,099,906	+				-0.3
4,099,906	+				+0.5
4,099,906	+				+0.2
4,099,906	+				+0.5
4,099,906	+				+0.0
4,099,906	+				-0.7
4,099,906	+				-0.1
4,099,907	-				-0.8
4,099,907	-				+0.1
4,099,907	-				-0.1
4,099,907	-				+1.3
4,099,907	-				-0.2
4,099,907	-				-1.4
4,099,928	+				+1.5
4,099,928	+				+0.2
4,099,929	-				+0.2
4,099,929	-				+0.6
4,099,929	-				-0.0
4,099,929	-				-0.7
4,099,929	-				+0.1
4,099,929	-				-0.0
4,100,159	+		Ga0059261_3986	0.32	-0.3
4,100,159	+		Ga0059261_3986	0.32	-0.3
4,100,160	-		Ga0059261_3986	0.32	+0.0
4,100,160	-		Ga0059261_3986	0.32	-0.1
4,100,160	-		Ga0059261_3986	0.32	-0.2
4,100,160	-		Ga0059261_3986	0.32	+0.6
4,100,160	-		Ga0059261_3986	0.32	+0.1
4,100,161	+		Ga0059261_3986	0.33	+0.6
4,100,161	+		Ga0059261_3986	0.33	+1.3
4,100,162	-		Ga0059261_3986	0.33	-1.7
4,100,162	-		Ga0059261_3986	0.33	-0.3
4,100,288	+		Ga0059261_3986	0.49	-0.5
4,100,288	+		Ga0059261_3986	0.49	+0.2
4,100,288	+		Ga0059261_3986	0.49	-0.5
4,100,288	+		Ga0059261_3986	0.49	+0.3
4,100,288	+		Ga0059261_3986	0.49	-0.9
4,100,288	+		Ga0059261_3986	0.49	+0.2
4,100,289	-		Ga0059261_3986	0.49	-0.8
4,100,695	+				+0.3
4,100,695	+				-0.3
4,100,695	+				+0.2
4,100,696	-				-1.1
4,100,696	-				-0.1
4,100,698	+				+0.1
4,100,698	+				-0.6
4,100,699	-				-0.1
4,100,699	-				-0.7