Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3719

Experiment: Choline Lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 5 mM
3,830,381	+		Ga0059261_3717	0.25	-1.1
3,830,381	+		Ga0059261_3717	0.25	-0.6
3,830,381	+		Ga0059261_3717	0.25	-0.9
3,830,381	+				+0.4
3,830,381	+		Ga0059261_3717	0.25	+0.2
3,830,382	-		Ga0059261_3717	0.25	+0.1
3,830,383	+		Ga0059261_3717	0.25	-0.7
3,830,383	+		Ga0059261_3717	0.25	+2.3
3,830,383	+		Ga0059261_3717	0.25	+0.6
3,830,383	+		Ga0059261_3717	0.25	+0.9
3,830,383	+		Ga0059261_3717	0.25	-0.5
3,830,383	+		Ga0059261_3717	0.25	-0.3
3,830,383	+		Ga0059261_3717	0.25	-0.4
3,830,383	+		Ga0059261_3717	0.25	+0.6
3,830,383	+		Ga0059261_3717	0.25	+0.1
3,830,383	+		Ga0059261_3717	0.25	+2.6
3,830,384	-		Ga0059261_3717	0.25	-0.4
3,830,384	-		Ga0059261_3717	0.25	+0.2
3,830,384	-		Ga0059261_3717	0.25	-0.6
3,830,384	-		Ga0059261_3717	0.25	-0.3
3,830,384	-		Ga0059261_3717	0.25	+1.1
3,830,384	-		Ga0059261_3717	0.25	-1.3
3,830,384	-		Ga0059261_3717	0.25	-0.4
3,830,384	-		Ga0059261_3717	0.25	-0.1
3,830,384	-		Ga0059261_3717	0.25	+0.5
3,830,384	-		Ga0059261_3717	0.25	-0.4
3,830,384	-		Ga0059261_3717	0.25	+0.6
3,830,452	+		Ga0059261_3717	0.41	+0.9
3,830,452	+		Ga0059261_3717	0.41	-0.0
3,830,676	+				-0.3
3,830,676	+				+0.1
3,830,677	-				-0.4
3,830,677	-				-0.2
3,830,677	-				-0.4
3,830,677	-				-0.3
3,830,677	-				-0.1
3,830,732	+				+0.7
3,830,732	+				+0.3
3,830,732	+				+0.2
3,830,732	+				-0.2
3,830,733	-				+0.5
3,830,733	-				-0.7
3,830,733	-				-0.6
3,830,733	-				+0.5
3,830,733	-				+0.3
3,830,795	+				-0.1
3,830,795	+				+0.0
3,830,795	+				+0.2
3,830,795	+				+0.0
3,830,795	+				-0.3
3,830,795	+				-1.3
3,830,795	+				-1.6
3,830,795	+				-2.0
3,830,795	+				+0.2
3,830,796	-				+0.3
3,830,796	-				+0.9
3,830,836	+				-1.9
3,830,836	+				-0.4
3,830,860	+				+0.8
3,830,860	+				+1.2
3,830,860	+				+0.4
3,830,861	-				+0.2
3,831,133	+		Ga0059261_3718	0.62	-0.5
3,831,133	+		Ga0059261_3718	0.62	+0.6
3,831,133	+		Ga0059261_3718	0.62	+0.2
3,831,134	-		Ga0059261_3718	0.62	-0.7
3,831,134	-		Ga0059261_3718	0.62	+0.3
3,831,134	-		Ga0059261_3718	0.62	+0.0
3,831,134	-		Ga0059261_3718	0.62	+0.3
3,831,141	+		Ga0059261_3718	0.64	+0.5
3,831,141	+		Ga0059261_3718	0.64	+0.8
3,831,142	-		Ga0059261_3718	0.64	-0.6
3,831,142	-		Ga0059261_3718	0.64	+0.3
3,831,142	-		Ga0059261_3718	0.64	+0.2
3,831,142	-		Ga0059261_3718	0.64	+0.4
3,831,226	+		Ga0059261_3718	0.89	-0.5
3,831,262	+				+0.3
3,831,262	+				+0.0
3,831,262	+				+0.8
3,831,262	+				+0.1
3,831,263	-				+0.6
3,831,263	-				+0.6
3,831,263	-				-0.6
3,831,263	-				+0.8
3,831,522	+		Ga0059261_3719	0.16	+0.2
3,831,523	-		Ga0059261_3719	0.16	+0.0
3,831,595	+		Ga0059261_3719	0.22	-0.1
3,831,595	+		Ga0059261_3719	0.22	+0.6
3,831,595	+		Ga0059261_3719	0.22	+0.3
3,831,596	-		Ga0059261_3719	0.22	+0.1
3,831,596	-		Ga0059261_3719	0.22	+0.3
3,831,596	-		Ga0059261_3719	0.22	-0.2
3,831,605	-		Ga0059261_3719	0.22	+0.8
3,831,605	-		Ga0059261_3719	0.22	-1.3
3,831,605	-		Ga0059261_3719	0.22	+0.5
3,831,606	+		Ga0059261_3719	0.22	+0.1
3,831,606	+		Ga0059261_3719	0.22	+0.3
3,831,606	+		Ga0059261_3719	0.22	+0.0
3,831,607	-		Ga0059261_3719	0.23	+1.0
3,831,607	-		Ga0059261_3719	0.23	+1.3
3,831,607	-		Ga0059261_3719	0.23	+1.2
3,831,715	+		Ga0059261_3719	0.31	-0.3
3,831,715	+		Ga0059261_3719	0.31	-0.7
3,831,715	+		Ga0059261_3719	0.31	-1.2
3,831,715	+		Ga0059261_3719	0.31	+1.2
3,831,715	+		Ga0059261_3719	0.31	+0.1
3,831,716	-		Ga0059261_3719	0.31	+0.4
3,831,716	-		Ga0059261_3719	0.31	-0.6
3,831,716	-		Ga0059261_3719	0.31	+0.4
3,831,716	-		Ga0059261_3719	0.31	-0.2
3,831,716	-		Ga0059261_3719	0.31	+0.0
3,831,716	-		Ga0059261_3719	0.31	+0.7
3,831,716	-		Ga0059261_3719	0.31	-0.2
3,831,730	+		Ga0059261_3719	0.32	+0.4
3,831,826	+		Ga0059261_3719	0.40	+1.1
3,831,826	+		Ga0059261_3719	0.40	-0.1
3,831,826	+		Ga0059261_3719	0.40	+0.5
3,831,826	+		Ga0059261_3719	0.40	+0.3
3,831,826	+		Ga0059261_3719	0.40	-0.2
3,831,826	+		Ga0059261_3719	0.40	-0.7
3,831,826	+		Ga0059261_3719	0.40	-0.8
3,831,826	+		Ga0059261_3719	0.40	-0.7
3,831,826	+		Ga0059261_3719	0.40	+0.8
3,831,826	+		Ga0059261_3719	0.40	+0.8
3,831,826	+		Ga0059261_3719	0.40	+0.6
3,831,826	+		Ga0059261_3719	0.40	+0.1
3,831,826	+		Ga0059261_3719	0.40	-0.5
3,831,827	-		Ga0059261_3719	0.40	-0.4
3,831,827	-		Ga0059261_3719	0.40	-0.2
3,831,827	-		Ga0059261_3719	0.40	+0.6
3,831,827	-		Ga0059261_3719	0.40	+0.4
3,831,827	-		Ga0059261_3719	0.40	+0.2
3,831,827	-		Ga0059261_3719	0.40	+0.0
3,831,827	-		Ga0059261_3719	0.40	+0.7
3,831,827	-		Ga0059261_3719	0.40	-0.1
3,831,827	-		Ga0059261_3719	0.40	+1.1
3,831,827	-		Ga0059261_3719	0.40	+0.4
3,831,914	-		Ga0059261_3719	0.47	+0.3
3,831,963	+		Ga0059261_3719	0.50	-1.2
3,831,964	-		Ga0059261_3719	0.50	+0.2
3,832,188	+		Ga0059261_3719	0.68	+0.0
3,832,188	+		Ga0059261_3719	0.68	+0.0
3,832,188	+		Ga0059261_3719	0.68	+0.6
3,832,189	-		Ga0059261_3719	0.68	+0.1
3,832,198	+		Ga0059261_3719	0.69	+0.7
3,832,204	+		Ga0059261_3719	0.69	-0.1
3,832,204	+		Ga0059261_3719	0.69	+0.4
3,832,204	+		Ga0059261_3719	0.69	+0.2
3,832,204	+		Ga0059261_3719	0.69	-0.3
3,832,204	+		Ga0059261_3719	0.69	+0.4
3,832,205	-		Ga0059261_3719	0.69	-0.3
3,832,205	-		Ga0059261_3719	0.69	-0.1
3,832,205	-		Ga0059261_3719	0.69	+1.0
3,832,205	-		Ga0059261_3719	0.69	+0.6
3,832,205	-		Ga0059261_3719	0.69	+1.8
3,832,205	-		Ga0059261_3719	0.69	+0.3
3,832,205	-		Ga0059261_3719	0.69	+0.7
3,832,206	+		Ga0059261_3719	0.69	+1.3
3,832,206	+		Ga0059261_3719	0.69	+1.0
3,832,206	+		Ga0059261_3719	0.69	+0.3
3,832,206	+		Ga0059261_3719	0.69	+0.3
3,832,207	-		Ga0059261_3719	0.69	-0.3
3,832,207	-		Ga0059261_3719	0.69	-0.0
3,832,393	+		Ga0059261_3719	0.84	+1.2
3,832,393	+		Ga0059261_3719	0.84	-0.2
3,832,393	+		Ga0059261_3719	0.84	+0.1
3,832,394	-		Ga0059261_3719	0.84	+0.5
3,832,492	+				-0.1
3,832,493	-				+1.3
3,832,493	-				-0.1
3,832,730	+		Ga0059261_3720	0.29	+3.3
3,832,730	+		Ga0059261_3720	0.29	-0.4
3,832,730	+		Ga0059261_3720	0.29	+0.4
3,832,731	-		Ga0059261_3720	0.29	-0.1
3,832,731	-		Ga0059261_3720	0.29	-0.7
3,832,731	-		Ga0059261_3720	0.29	+0.2
3,832,731	-		Ga0059261_3720	0.29	+0.7
3,832,731	-		Ga0059261_3720	0.29	-0.1
3,832,738	+		Ga0059261_3720	0.31	+0.7
3,833,068	-				+0.2
3,833,068	-				+1.0
3,833,068	-				+0.2
3,833,068	-				-0.1
3,833,103	+				+0.9
3,833,103	+				+0.8
3,833,103	+				-0.9
3,833,104	-				-0.3
3,833,104	-				+0.9
3,833,118	+				+0.2
3,833,166	+		Ga0059261_3721	0.13	+0.0
3,833,166	+		Ga0059261_3721	0.13	+0.8
3,833,311	+		Ga0059261_3721	0.28	-0.2
3,833,312	-		Ga0059261_3721	0.28	-0.1
3,833,359	+		Ga0059261_3721	0.33	+0.2
3,833,360	-		Ga0059261_3721	0.33	+1.9
3,833,360	-		Ga0059261_3721	0.33	+1.1