Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1830

Experiment: Choline Lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1829 and Ga0059261_1830 are separated by 22 nucleotidesGa0059261_1830 and Ga0059261_1831 overlap by 4 nucleotidesGa0059261_1831 and Ga0059261_1832 are separated by 60 nucleotides Ga0059261_1829: Ga0059261_1829 - Ribonucleotide reductase, beta subunit, at 1,938,842 to 1,939,894 _1829 Ga0059261_1830: Ga0059261_1830 - hypothetical protein, at 1,939,917 to 1,940,102 _1830 Ga0059261_1831: Ga0059261_1831 - hypothetical protein, at 1,940,099 to 1,940,410 _1831 Ga0059261_1832: Ga0059261_1832 - Ribonucleotide reductase, alpha subunit, at 1,940,471 to 1,942,417 _1832 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -1 0 1at 1939.914 kb on - strandat 1939.914 kb on - strandat 1940.003 kb on - strand, within Ga0059261_1830at 1940.003 kb on - strand, within Ga0059261_1830at 1940.206 kb on - strand, within Ga0059261_1831at 1940.206 kb on - strand, within Ga0059261_1831at 1940.233 kb on - strand, within Ga0059261_1831at 1940.233 kb on - strand, within Ga0059261_1831at 1940.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 5 mM
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1,939,914 - -1.4
1,939,914 - -0.4
1,940,003 - Ga0059261_1830 0.46 +0.8
1,940,003 - Ga0059261_1830 0.46 +0.1
1,940,206 - Ga0059261_1831 0.34 +0.3
1,940,206 - Ga0059261_1831 0.34 -1.6
1,940,233 - Ga0059261_1831 0.43 -0.9
1,940,233 - Ga0059261_1831 0.43 +0.2
1,940,473 - +0.7

Or see this region's nucleotide sequence