Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0867

Experiment: Choline Lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0864 and Ga0059261_0865 are separated by 174 nucleotidesGa0059261_0865 and Ga0059261_0866 are separated by 17 nucleotidesGa0059261_0866 and Ga0059261_0867 overlap by 4 nucleotidesGa0059261_0867 and Ga0059261_0868 are separated by 89 nucleotides Ga0059261_0864: Ga0059261_0864 - hypothetical protein, at 905,222 to 905,617 _0864 Ga0059261_0865: Ga0059261_0865 - RNA, at 905,792 to 905,873 _0865 Ga0059261_0866: Ga0059261_0866 - Putative threonine efflux protein, at 905,891 to 906,523 _0866 Ga0059261_0867: Ga0059261_0867 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 906,520 to 907,314 _0867 Ga0059261_0868: Ga0059261_0868 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 907,404 to 908,945 _0868 Position (kb) 906 907 908Strain fitness (log2 ratio) -3 -2 -1 0 1at 905.568 kb on + strand, within Ga0059261_0864at 905.576 kb on - strand, within Ga0059261_0864at 905.653 kb on + strandat 905.654 kb on - strandat 905.654 kb on - strandat 905.717 kb on + strandat 905.723 kb on + strandat 905.746 kb on + strandat 905.747 kb on - strandat 905.782 kb on + strandat 905.783 kb on - strandat 905.969 kb on + strand, within Ga0059261_0866at 905.969 kb on + strand, within Ga0059261_0866at 905.969 kb on + strand, within Ga0059261_0866at 905.969 kb on + strand, within Ga0059261_0866at 905.970 kb on - strand, within Ga0059261_0866at 905.970 kb on - strand, within Ga0059261_0866at 905.970 kb on - strandat 905.970 kb on - strand, within Ga0059261_0866at 905.970 kb on - strand, within Ga0059261_0866at 906.050 kb on + strand, within Ga0059261_0866at 906.050 kb on + strand, within Ga0059261_0866at 906.050 kb on + strand, within Ga0059261_0866at 906.051 kb on - strand, within Ga0059261_0866at 906.051 kb on - strand, within Ga0059261_0866at 906.051 kb on - strand, within Ga0059261_0866at 906.051 kb on - strand, within Ga0059261_0866at 906.051 kb on - strand, within Ga0059261_0866at 906.068 kb on + strand, within Ga0059261_0866at 906.068 kb on + strand, within Ga0059261_0866at 906.068 kb on + strand, within Ga0059261_0866at 906.068 kb on + strand, within Ga0059261_0866at 906.069 kb on - strand, within Ga0059261_0866at 906.107 kb on + strand, within Ga0059261_0866at 906.107 kb on + strand, within Ga0059261_0866at 906.138 kb on - strand, within Ga0059261_0866at 906.281 kb on + strand, within Ga0059261_0866at 906.282 kb on - strand, within Ga0059261_0866at 906.282 kb on - strand, within Ga0059261_0866at 906.282 kb on - strand, within Ga0059261_0866at 906.521 kb on + strandat 906.752 kb on + strand, within Ga0059261_0867at 906.753 kb on - strand, within Ga0059261_0867at 906.845 kb on + strand, within Ga0059261_0867at 906.845 kb on + strand, within Ga0059261_0867at 906.845 kb on + strand, within Ga0059261_0867at 906.978 kb on - strand, within Ga0059261_0867at 906.978 kb on - strand, within Ga0059261_0867at 906.978 kb on - strand, within Ga0059261_0867at 906.978 kb on - strandat 907.202 kb on + strand, within Ga0059261_0867at 907.202 kb on + strand, within Ga0059261_0867at 907.202 kb on + strand, within Ga0059261_0867at 907.202 kb on + strand, within Ga0059261_0867at 907.202 kb on + strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.203 kb on - strand, within Ga0059261_0867at 907.376 kb on - strandat 907.524 kb on + strandat 907.524 kb on + strandat 907.524 kb on + strandat 907.525 kb on - strandat 907.525 kb on - strandat 907.525 kb on - strandat 907.525 kb on - strandat 907.525 kb on - strandat 907.629 kb on + strand, within Ga0059261_0868at 907.630 kb on - strand, within Ga0059261_0868at 907.911 kb on + strand, within Ga0059261_0868at 907.911 kb on + strand, within Ga0059261_0868at 907.911 kb on + strand, within Ga0059261_0868at 907.911 kb on + strand, within Ga0059261_0868at 907.912 kb on - strand, within Ga0059261_0868at 907.912 kb on - strand, within Ga0059261_0868at 907.912 kb on - strand, within Ga0059261_0868at 907.912 kb on - strand, within Ga0059261_0868at 907.976 kb on + strand, within Ga0059261_0868at 907.977 kb on - strand, within Ga0059261_0868at 908.182 kb on - strand, within Ga0059261_0868at 908.182 kb on - strand, within Ga0059261_0868

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 5 mM
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905,568 + Ga0059261_0864 0.87 -0.4
905,576 - Ga0059261_0864 0.89 +0.1
905,653 + +0.5
905,654 - -0.9
905,654 - +0.3
905,717 + -0.1
905,723 + -0.1
905,746 + -0.6
905,747 - +0.1
905,782 + -0.1
905,783 - -0.3
905,969 + Ga0059261_0866 0.12 -0.5
905,969 + Ga0059261_0866 0.12 +0.7
905,969 + Ga0059261_0866 0.12 -0.2
905,969 + Ga0059261_0866 0.12 -0.1
905,970 - Ga0059261_0866 0.12 -0.0
905,970 - Ga0059261_0866 0.12 +0.2
905,970 - -1.2
905,970 - Ga0059261_0866 0.12 +0.0
905,970 - Ga0059261_0866 0.12 +0.1
906,050 + Ga0059261_0866 0.25 +0.1
906,050 + Ga0059261_0866 0.25 -0.1
906,050 + Ga0059261_0866 0.25 -0.5
906,051 - Ga0059261_0866 0.25 +0.2
906,051 - Ga0059261_0866 0.25 +0.4
906,051 - Ga0059261_0866 0.25 -1.0
906,051 - Ga0059261_0866 0.25 +1.1
906,051 - Ga0059261_0866 0.25 +1.3
906,068 + Ga0059261_0866 0.28 +0.4
906,068 + Ga0059261_0866 0.28 -1.1
906,068 + Ga0059261_0866 0.28 -0.2
906,068 + Ga0059261_0866 0.28 +0.5
906,069 - Ga0059261_0866 0.28 -0.8
906,107 + Ga0059261_0866 0.34 +0.2
906,107 + Ga0059261_0866 0.34 +0.4
906,138 - Ga0059261_0866 0.39 -0.4
906,281 + Ga0059261_0866 0.62 -0.1
906,282 - Ga0059261_0866 0.62 +0.1
906,282 - Ga0059261_0866 0.62 -0.2
906,282 - Ga0059261_0866 0.62 -0.1
906,521 + -0.3
906,752 + Ga0059261_0867 0.29 -1.2
906,753 - Ga0059261_0867 0.29 +0.5
906,845 + Ga0059261_0867 0.41 -0.2
906,845 + Ga0059261_0867 0.41 +1.3
906,845 + Ga0059261_0867 0.41 +0.1
906,978 - Ga0059261_0867 0.58 +0.4
906,978 - Ga0059261_0867 0.58 +0.2
906,978 - Ga0059261_0867 0.58 -0.1
906,978 - +1.4
907,202 + Ga0059261_0867 0.86 +0.1
907,202 + Ga0059261_0867 0.86 -0.1
907,202 + Ga0059261_0867 0.86 +0.4
907,202 + Ga0059261_0867 0.86 +0.4
907,202 + Ga0059261_0867 0.86 +0.9
907,203 - Ga0059261_0867 0.86 -0.1
907,203 - Ga0059261_0867 0.86 +0.2
907,203 - Ga0059261_0867 0.86 -1.1
907,203 - Ga0059261_0867 0.86 +1.4
907,203 - Ga0059261_0867 0.86 -1.1
907,203 - Ga0059261_0867 0.86 -0.2
907,203 - Ga0059261_0867 0.86 +1.0
907,203 - Ga0059261_0867 0.86 +0.5
907,203 - Ga0059261_0867 0.86 +0.1
907,203 - Ga0059261_0867 0.86 -1.5
907,376 - -0.4
907,524 + -0.5
907,524 + -1.2
907,524 + -0.0
907,525 - +0.2
907,525 - +0.5
907,525 - +0.8
907,525 - -0.1
907,525 - -0.1
907,629 + Ga0059261_0868 0.15 +0.3
907,630 - Ga0059261_0868 0.15 +0.2
907,911 + Ga0059261_0868 0.33 -0.9
907,911 + Ga0059261_0868 0.33 -0.1
907,911 + Ga0059261_0868 0.33 +0.1
907,911 + Ga0059261_0868 0.33 +0.2
907,912 - Ga0059261_0868 0.33 -2.1
907,912 - Ga0059261_0868 0.33 -0.5
907,912 - Ga0059261_0868 0.33 -0.2
907,912 - Ga0059261_0868 0.33 +0.8
907,976 + Ga0059261_0868 0.37 -0.5
907,977 - Ga0059261_0868 0.37 -0.9
908,182 - Ga0059261_0868 0.50 -0.5
908,182 - Ga0059261_0868 0.50 -3.5

Or see this region's nucleotide sequence