Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0840

Experiment: Choline Lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0839 and Ga0059261_0840 are separated by 94 nucleotidesGa0059261_0840 and Ga0059261_0841 overlap by 1 nucleotidesGa0059261_0841 and Ga0059261_0842 are separated by 30 nucleotides Ga0059261_0839: Ga0059261_0839 - Acyl-CoA dehydrogenases, at 879,153 to 880,334 _0839 Ga0059261_0840: Ga0059261_0840 - Acyl-CoA dehydrogenases, at 880,429 to 881,556 _0840 Ga0059261_0841: Ga0059261_0841 - Acyl-CoA thioesterase, at 881,556 to 882,443 _0841 Ga0059261_0842: Ga0059261_0842 - TonB family C-terminal domain, at 882,474 to 883,580 _0842 Position (kb) 880 881 882Strain fitness (log2 ratio) -2 -1 0 1 2at 879.477 kb on + strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.550 kb on - strand, within Ga0059261_0839at 879.605 kb on + strand, within Ga0059261_0839at 879.605 kb on + strand, within Ga0059261_0839at 879.606 kb on - strand, within Ga0059261_0839at 879.618 kb on + strand, within Ga0059261_0839at 879.618 kb on + strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.807 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.132 kb on - strand, within Ga0059261_0839at 880.132 kb on - strand, within Ga0059261_0839at 880.264 kb on - strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.438 kb on + strandat 880.438 kb on + strandat 880.439 kb on - strandat 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.204 kb on - strand, within Ga0059261_0840at 881.204 kb on - strand, within Ga0059261_0840at 881.278 kb on + strand, within Ga0059261_0840at 881.278 kb on + strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strandat 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.470 kb on + strandat 881.470 kb on + strandat 881.470 kb on + strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.471 kb on - strandat 881.551 kb on + strandat 881.649 kb on + strand, within Ga0059261_0841at 881.649 kb on + strand, within Ga0059261_0841at 881.650 kb on - strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.769 kb on + strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.770 kb on - strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.808 kb on + strand, within Ga0059261_0841at 881.809 kb on - strand, within Ga0059261_0841at 882.117 kb on + strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strand, within Ga0059261_0841at 882.118 kb on - strandat 882.183 kb on + strand, within Ga0059261_0841at 882.183 kb on + strand, within Ga0059261_0841at 882.183 kb on + strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.184 kb on - strand, within Ga0059261_0841at 882.321 kb on + strand, within Ga0059261_0841at 882.321 kb on + strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841at 882.322 kb on - strand, within Ga0059261_0841

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 5 mM
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879,477 + Ga0059261_0839 0.27 +0.3
879,477 + Ga0059261_0839 0.27 +0.7
879,477 + Ga0059261_0839 0.27 +0.1
879,478 - Ga0059261_0839 0.27 -0.5
879,478 - Ga0059261_0839 0.27 +0.2
879,478 - Ga0059261_0839 0.27 +0.0
879,550 - Ga0059261_0839 0.34 -0.7
879,605 + Ga0059261_0839 0.38 -0.1
879,605 + Ga0059261_0839 0.38 -1.2
879,606 - Ga0059261_0839 0.38 -0.4
879,618 + Ga0059261_0839 0.39 +0.8
879,618 + Ga0059261_0839 0.39 +0.2
879,619 - Ga0059261_0839 0.39 +1.1
879,619 - Ga0059261_0839 0.39 -0.1
879,619 - Ga0059261_0839 0.39 +0.1
879,619 - Ga0059261_0839 0.39 +0.8
879,619 - Ga0059261_0839 0.39 -0.1
879,619 - Ga0059261_0839 0.39 -0.4
879,619 - Ga0059261_0839 0.39 -0.3
879,651 + Ga0059261_0839 0.42 -0.9
879,651 + Ga0059261_0839 0.42 -0.5
879,651 + Ga0059261_0839 0.42 +0.3
879,651 + Ga0059261_0839 0.42 +0.5
879,651 + Ga0059261_0839 0.42 -0.4
879,652 - Ga0059261_0839 0.42 +0.8
879,652 - Ga0059261_0839 0.42 +0.2
879,652 - Ga0059261_0839 0.42 +0.5
879,652 - Ga0059261_0839 0.42 +0.1
879,652 - Ga0059261_0839 0.42 -0.0
879,807 + Ga0059261_0839 0.55 -0.6
879,879 + Ga0059261_0839 0.61 +0.2
879,879 + Ga0059261_0839 0.61 +2.4
879,879 + Ga0059261_0839 0.61 +1.7
879,879 + Ga0059261_0839 0.61 +0.3
879,880 - Ga0059261_0839 0.62 -0.1
879,880 - Ga0059261_0839 0.62 -0.3
879,880 - Ga0059261_0839 0.62 -1.1
879,880 - Ga0059261_0839 0.62 +1.1
880,129 - Ga0059261_0839 0.83 -0.4
880,129 - Ga0059261_0839 0.83 -0.1
880,129 - Ga0059261_0839 0.83 +0.8
880,129 - Ga0059261_0839 0.83 +0.3
880,129 - Ga0059261_0839 0.83 +0.6
880,129 - Ga0059261_0839 0.83 +0.1
880,132 - Ga0059261_0839 0.83 +0.9
880,132 - Ga0059261_0839 0.83 -0.3
880,264 - -0.5
880,332 + +0.2
880,332 + +0.4
880,332 + -0.1
880,332 + +0.4
880,332 + +0.1
880,333 - +0.1
880,333 - +0.6
880,333 - +1.3
880,333 - +0.5
880,333 - -0.0
880,438 + -0.1
880,438 + -2.3
880,439 - -0.3
881,203 + Ga0059261_0840 0.69 +0.2
881,203 + Ga0059261_0840 0.69 -0.0
881,203 + Ga0059261_0840 0.69 +0.1
881,203 + Ga0059261_0840 0.69 +0.4
881,204 - Ga0059261_0840 0.69 +1.1
881,204 - Ga0059261_0840 0.69 -1.4
881,278 + Ga0059261_0840 0.75 -0.6
881,278 + Ga0059261_0840 0.75 -0.5
881,279 - Ga0059261_0840 0.75 +0.5
881,279 - +0.4
881,279 - Ga0059261_0840 0.75 -0.6
881,279 - Ga0059261_0840 0.75 -0.2
881,279 - Ga0059261_0840 0.75 +1.1
881,279 - Ga0059261_0840 0.75 +0.3
881,470 + -0.1
881,470 + +0.2
881,470 + +0.7
881,471 - -0.5
881,471 - +0.4
881,471 - +0.1
881,471 - -0.5
881,471 - -0.7
881,471 - +0.6
881,551 + -0.2
881,649 + Ga0059261_0841 0.10 -0.6
881,649 + Ga0059261_0841 0.10 -1.1
881,650 - Ga0059261_0841 0.11 -0.5
881,769 + Ga0059261_0841 0.24 -0.1
881,769 + Ga0059261_0841 0.24 +0.1
881,769 + Ga0059261_0841 0.24 -0.3
881,769 + Ga0059261_0841 0.24 +0.6
881,770 - Ga0059261_0841 0.24 -0.1
881,770 - Ga0059261_0841 0.24 +0.3
881,770 - Ga0059261_0841 0.24 -0.2
881,808 + Ga0059261_0841 0.28 -0.5
881,808 + Ga0059261_0841 0.28 +0.1
881,808 + Ga0059261_0841 0.28 -0.2
881,809 - Ga0059261_0841 0.28 -1.1
882,117 + Ga0059261_0841 0.63 -0.0
882,118 - Ga0059261_0841 0.63 +0.4
882,118 - Ga0059261_0841 0.63 -0.6
882,118 - Ga0059261_0841 0.63 -0.9
882,118 - -1.7
882,183 + Ga0059261_0841 0.71 +0.2
882,183 + Ga0059261_0841 0.71 +0.1
882,183 + Ga0059261_0841 0.71 +0.3
882,184 - Ga0059261_0841 0.71 -0.3
882,184 - Ga0059261_0841 0.71 +0.6
882,184 - Ga0059261_0841 0.71 -0.5
882,184 - Ga0059261_0841 0.71 +0.2
882,321 + Ga0059261_0841 0.86 -0.1
882,321 + Ga0059261_0841 0.86 -0.6
882,322 - Ga0059261_0841 0.86 -0.1
882,322 - Ga0059261_0841 0.86 -0.0
882,322 - Ga0059261_0841 0.86 +0.2

Or see this region's nucleotide sequence