Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0657

Experiment: Choline Lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0656 and Ga0059261_0657 are separated by 17 nucleotidesGa0059261_0657 and Ga0059261_0658 are separated by 119 nucleotides Ga0059261_0656: Ga0059261_0656 - Predicted dehydrogenases and related proteins, at 696,766 to 697,797 _0656 Ga0059261_0657: Ga0059261_0657 - Uncharacterized protein conserved in bacteria, at 697,815 to 698,459 _0657 Ga0059261_0658: Ga0059261_0658 - Beta-lactamase class C and other penicillin binding proteins, at 698,579 to 699,859 _0658 Position (kb) 697 698 699Strain fitness (log2 ratio) -1 0 1 2at 696.921 kb on - strand, within Ga0059261_0656at 696.921 kb on - strand, within Ga0059261_0656at 696.921 kb on - strand, within Ga0059261_0656at 696.921 kb on - strand, within Ga0059261_0656at 697.175 kb on + strand, within Ga0059261_0656at 697.175 kb on + strand, within Ga0059261_0656at 697.733 kb on + strandat 697.733 kb on + strandat 697.733 kb on + strandat 697.733 kb on + strandat 697.733 kb on + strandat 697.734 kb on - strandat 697.734 kb on - strandat 697.734 kb on - strandat 697.734 kb on - strandat 697.766 kb on + strandat 697.916 kb on - strand, within Ga0059261_0657at 698.547 kb on + strandat 698.783 kb on + strand, within Ga0059261_0658at 698.783 kb on + strand, within Ga0059261_0658at 698.783 kb on + strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.784 kb on - strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.786 kb on + strand, within Ga0059261_0658at 698.787 kb on - strand, within Ga0059261_0658at 698.943 kb on - strand, within Ga0059261_0658at 699.068 kb on + strand, within Ga0059261_0658at 699.068 kb on + strand, within Ga0059261_0658at 699.069 kb on - strand, within Ga0059261_0658at 699.069 kb on - strand, within Ga0059261_0658at 699.203 kb on + strand, within Ga0059261_0658at 699.203 kb on + strand, within Ga0059261_0658at 699.203 kb on + strand, within Ga0059261_0658at 699.204 kb on - strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.269 kb on + strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.270 kb on - strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.273 kb on + strand, within Ga0059261_0658at 699.274 kb on - strand, within Ga0059261_0658at 699.274 kb on - strand, within Ga0059261_0658at 699.274 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 5 mM
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696,921 - Ga0059261_0656 0.15 -0.6
696,921 - Ga0059261_0656 0.15 -0.2
696,921 - Ga0059261_0656 0.15 -1.3
696,921 - Ga0059261_0656 0.15 -0.5
697,175 + Ga0059261_0656 0.40 +0.1
697,175 + Ga0059261_0656 0.40 -0.3
697,733 + +1.2
697,733 + +0.5
697,733 + -0.5
697,733 + +0.6
697,733 + -0.4
697,734 - +2.0
697,734 - -0.2
697,734 - +0.0
697,734 - +0.1
697,766 + +0.4
697,916 - Ga0059261_0657 0.16 -0.8
698,547 + +0.7
698,783 + Ga0059261_0658 0.16 +2.2
698,783 + Ga0059261_0658 0.16 -0.5
698,783 + Ga0059261_0658 0.16 -1.3
698,784 - Ga0059261_0658 0.16 +0.3
698,784 - Ga0059261_0658 0.16 +0.3
698,784 - Ga0059261_0658 0.16 +0.1
698,784 - Ga0059261_0658 0.16 +1.0
698,784 - Ga0059261_0658 0.16 -1.4
698,784 - Ga0059261_0658 0.16 +0.5
698,784 - Ga0059261_0658 0.16 +0.1
698,784 - Ga0059261_0658 0.16 +0.8
698,784 - Ga0059261_0658 0.16 +0.4
698,786 + Ga0059261_0658 0.16 -0.0
698,786 + Ga0059261_0658 0.16 -1.0
698,786 + Ga0059261_0658 0.16 -0.7
698,786 + Ga0059261_0658 0.16 +0.1
698,787 - Ga0059261_0658 0.16 +0.3
698,943 - Ga0059261_0658 0.28 -0.0
699,068 + Ga0059261_0658 0.38 -0.8
699,068 + Ga0059261_0658 0.38 -0.6
699,069 - Ga0059261_0658 0.38 +0.2
699,069 - Ga0059261_0658 0.38 +0.8
699,203 + Ga0059261_0658 0.49 +0.7
699,203 + Ga0059261_0658 0.49 -0.3
699,203 + Ga0059261_0658 0.49 +1.2
699,204 - Ga0059261_0658 0.49 +1.4
699,269 + Ga0059261_0658 0.54 -0.6
699,269 + Ga0059261_0658 0.54 -0.2
699,269 + Ga0059261_0658 0.54 -0.4
699,269 + Ga0059261_0658 0.54 -0.8
699,269 + Ga0059261_0658 0.54 -0.2
699,269 + Ga0059261_0658 0.54 +0.0
699,269 + Ga0059261_0658 0.54 -0.0
699,269 + Ga0059261_0658 0.54 -0.4
699,269 + Ga0059261_0658 0.54 +0.3
699,270 - Ga0059261_0658 0.54 -1.2
699,270 - Ga0059261_0658 0.54 -1.0
699,270 - Ga0059261_0658 0.54 -0.3
699,270 - Ga0059261_0658 0.54 -0.8
699,270 - Ga0059261_0658 0.54 +0.2
699,270 - Ga0059261_0658 0.54 -0.6
699,270 - Ga0059261_0658 0.54 -0.8
699,273 + Ga0059261_0658 0.54 +0.3
699,273 + Ga0059261_0658 0.54 -0.3
699,273 + Ga0059261_0658 0.54 +0.1
699,273 + Ga0059261_0658 0.54 -0.2
699,273 + Ga0059261_0658 0.54 +0.3
699,273 + Ga0059261_0658 0.54 -0.2
699,273 + Ga0059261_0658 0.54 -0.8
699,273 + Ga0059261_0658 0.54 +0.2
699,273 + Ga0059261_0658 0.54 +0.2
699,274 - Ga0059261_0658 0.54 -0.6
699,274 - Ga0059261_0658 0.54 -0.6
699,274 - Ga0059261_0658 0.54 +0.6
699,360 - Ga0059261_0658 0.61 -0.3
699,360 - Ga0059261_0658 0.61 -0.4
699,360 - Ga0059261_0658 0.61 -0.5
699,360 - Ga0059261_0658 0.61 +0.5
699,360 - Ga0059261_0658 0.61 +0.3
699,360 - Ga0059261_0658 0.61 +0.2
699,360 - Ga0059261_0658 0.61 -0.8
699,360 - Ga0059261_0658 0.61 -1.0
699,360 - Ga0059261_0658 0.61 -1.2
699,360 - Ga0059261_0658 0.61 -0.0
699,360 - Ga0059261_0658 0.61 +0.7
699,360 - Ga0059261_0658 0.61 -0.2

Or see this region's nucleotide sequence