Experiment: Choline Lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0471 and Ga0059261_0472 are separated by 19 nucleotides Ga0059261_0472 and Ga0059261_0473 are separated by 150 nucleotides Ga0059261_0473 and Ga0059261_0474 overlap by 4 nucleotides Ga0059261_0474 and Ga0059261_0475 are separated by 7 nucleotides
Ga0059261_0471: Ga0059261_0471 - Uncharacterized protein involved in copper resistance, at 459,646 to 460,626
_0471
Ga0059261_0472: Ga0059261_0472 - Predicted metal-binding protein, at 460,646 to 461,098
_0472
Ga0059261_0473: Ga0059261_0473 - Predicted Fe-S protein, at 461,249 to 461,427
_0473
Ga0059261_0474: Ga0059261_0474 - cation diffusion facilitator family transporter, at 461,424 to 462,368
_0474
Ga0059261_0475: Ga0059261_0475 - Uncharacterized protein conserved in bacteria, at 462,376 to 462,651
_0475
Position (kb) 461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 460.252 kb on + strand, within Ga0059261_0471 at 460.252 kb on + strand at 460.253 kb on - strand, within Ga0059261_0471 at 460.253 kb on - strand, within Ga0059261_0471 at 460.253 kb on - strand, within Ga0059261_0471 at 460.253 kb on - strand, within Ga0059261_0471 at 460.285 kb on + strand, within Ga0059261_0471 at 460.285 kb on + strand, within Ga0059261_0471 at 460.357 kb on + strand, within Ga0059261_0471 at 460.357 kb on + strand, within Ga0059261_0471 at 460.357 kb on + strand, within Ga0059261_0471 at 460.358 kb on - strand, within Ga0059261_0471 at 460.358 kb on - strand, within Ga0059261_0471 at 460.358 kb on - strand, within Ga0059261_0471 at 460.358 kb on - strand, within Ga0059261_0471 at 460.513 kb on + strand, within Ga0059261_0471 at 460.513 kb on + strand, within Ga0059261_0471 at 460.513 kb on + strand, within Ga0059261_0471 at 460.513 kb on + strand, within Ga0059261_0471 at 460.514 kb on - strand, within Ga0059261_0471 at 460.514 kb on - strand, within Ga0059261_0471 at 460.514 kb on - strand, within Ga0059261_0471 at 460.514 kb on - strand, within Ga0059261_0471 at 460.514 kb on - strand, within Ga0059261_0471 at 460.514 kb on - strand, within Ga0059261_0471 at 460.514 kb on - strand, within Ga0059261_0471 at 460.515 kb on + strand, within Ga0059261_0471 at 460.515 kb on + strand, within Ga0059261_0471 at 460.515 kb on + strand, within Ga0059261_0471 at 460.528 kb on + strand, within Ga0059261_0471 at 460.528 kb on + strand, within Ga0059261_0471 at 460.529 kb on - strand at 460.529 kb on - strand at 460.529 kb on - strand at 460.641 kb on + strand at 460.641 kb on + strand at 460.641 kb on + strand at 460.642 kb on - strand at 460.738 kb on - strand, within Ga0059261_0472 at 460.738 kb on - strand, within Ga0059261_0472 at 460.738 kb on - strand, within Ga0059261_0472 at 461.023 kb on - strand, within Ga0059261_0472 at 461.023 kb on - strand, within Ga0059261_0472 at 461.045 kb on + strand, within Ga0059261_0472 at 461.045 kb on + strand, within Ga0059261_0472 at 461.096 kb on + strand at 461.096 kb on + strand at 461.096 kb on + strand at 461.097 kb on - strand at 461.097 kb on - strand at 461.149 kb on + strand at 461.149 kb on + strand at 461.149 kb on + strand at 461.150 kb on - strand at 461.150 kb on - strand at 461.150 kb on - strand at 461.165 kb on + strand at 461.165 kb on + strand at 461.166 kb on - strand at 461.166 kb on - strand at 461.191 kb on + strand at 461.191 kb on + strand at 461.193 kb on + strand at 461.193 kb on + strand at 461.193 kb on + strand at 461.193 kb on + strand at 461.193 kb on + strand at 461.193 kb on + strand at 461.194 kb on - strand at 461.194 kb on - strand at 461.194 kb on - strand at 461.194 kb on - strand at 461.194 kb on - strand at 461.194 kb on - strand at 461.194 kb on - strand at 461.219 kb on + strand at 461.220 kb on - strand at 461.234 kb on + strand at 461.234 kb on + strand at 461.237 kb on + strand at 461.237 kb on + strand at 461.237 kb on + strand at 461.238 kb on - strand at 461.251 kb on - strand at 461.303 kb on + strand, within Ga0059261_0473 at 461.303 kb on + strand, within Ga0059261_0473 at 461.303 kb on + strand, within Ga0059261_0473 at 461.303 kb on + strand, within Ga0059261_0473 at 461.304 kb on - strand, within Ga0059261_0473 at 461.304 kb on - strand, within Ga0059261_0473 at 461.359 kb on - strand, within Ga0059261_0473 at 461.440 kb on + strand at 461.441 kb on + strand at 461.441 kb on + strand at 461.441 kb on + strand at 461.441 kb on + strand at 461.441 kb on + strand at 461.442 kb on - strand at 461.442 kb on - strand at 461.442 kb on - strand at 461.442 kb on - strand at 461.442 kb on - strand at 461.442 kb on - strand at 461.442 kb on - strand at 461.442 kb on - strand at 461.520 kb on + strand, within Ga0059261_0474 at 461.520 kb on + strand, within Ga0059261_0474 at 461.520 kb on + strand, within Ga0059261_0474 at 461.520 kb on + strand, within Ga0059261_0474 at 461.520 kb on + strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.521 kb on - strand, within Ga0059261_0474 at 461.658 kb on - strand, within Ga0059261_0474 at 461.709 kb on - strand, within Ga0059261_0474 at 461.744 kb on - strand, within Ga0059261_0474 at 461.744 kb on - strand, within Ga0059261_0474 at 461.744 kb on - strand, within Ga0059261_0474 at 461.768 kb on + strand, within Ga0059261_0474 at 461.810 kb on - strand, within Ga0059261_0474 at 461.810 kb on - strand, within Ga0059261_0474 at 461.825 kb on + strand, within Ga0059261_0474 at 461.825 kb on + strand, within Ga0059261_0474 at 461.826 kb on - strand, within Ga0059261_0474 at 461.826 kb on - strand, within Ga0059261_0474 at 461.828 kb on + strand, within Ga0059261_0474 at 461.828 kb on + strand, within Ga0059261_0474 at 461.828 kb on + strand, within Ga0059261_0474 at 461.828 kb on + strand, within Ga0059261_0474 at 461.829 kb on - strand, within Ga0059261_0474 at 461.829 kb on - strand, within Ga0059261_0474 at 461.829 kb on - strand, within Ga0059261_0474 at 461.940 kb on - strand, within Ga0059261_0474 at 462.004 kb on + strand, within Ga0059261_0474 at 462.005 kb on - strand, within Ga0059261_0474 at 462.036 kb on + strand, within Ga0059261_0474 at 462.099 kb on - strand, within Ga0059261_0474 at 462.110 kb on - strand at 462.110 kb on - strand, within Ga0059261_0474 at 462.110 kb on - strand, within Ga0059261_0474 at 462.110 kb on - strand, within Ga0059261_0474 at 462.139 kb on + strand, within Ga0059261_0474 at 462.140 kb on - strand, within Ga0059261_0474 at 462.140 kb on - strand, within Ga0059261_0474 at 462.140 kb on - strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.145 kb on + strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.146 kb on - strand, within Ga0059261_0474 at 462.150 kb on + strand at 462.151 kb on - strand, within Ga0059261_0474 at 462.188 kb on + strand, within Ga0059261_0474 at 462.189 kb on - strand, within Ga0059261_0474 at 462.215 kb on + strand, within Ga0059261_0474 at 462.215 kb on + strand, within Ga0059261_0474 at 462.215 kb on + strand, within Ga0059261_0474 at 462.215 kb on + strand, within Ga0059261_0474 at 462.216 kb on - strand, within Ga0059261_0474 at 462.216 kb on - strand, within Ga0059261_0474 at 462.216 kb on - strand, within Ga0059261_0474 at 462.230 kb on - strand, within Ga0059261_0474 at 462.237 kb on + strand, within Ga0059261_0474 at 462.237 kb on + strand, within Ga0059261_0474 at 462.299 kb on + strand at 462.299 kb on + strand at 462.299 kb on + strand at 462.299 kb on + strand at 462.300 kb on - strand at 462.369 kb on + strand at 462.369 kb on + strand at 462.369 kb on + strand at 462.369 kb on + strand at 462.369 kb on + strand at 462.369 kb on + strand at 462.369 kb on + strand at 462.369 kb on + strand at 462.370 kb on - strand at 462.370 kb on - strand at 462.370 kb on - strand at 462.370 kb on - strand at 462.370 kb on - strand at 462.372 kb on + strand at 462.373 kb on - strand at 462.373 kb on - strand at 462.373 kb on - strand at 462.377 kb on + strand at 462.378 kb on - strand at 462.387 kb on - strand at 462.387 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 5 mM remove 460,252 + Ga0059261_0471 0.62 +0.0 460,252 + +2.2 460,253 - Ga0059261_0471 0.62 +1.9 460,253 - Ga0059261_0471 0.62 -0.4 460,253 - Ga0059261_0471 0.62 +0.5 460,253 - Ga0059261_0471 0.62 -0.3 460,285 + Ga0059261_0471 0.65 +0.2 460,285 + Ga0059261_0471 0.65 -2.3 460,357 + Ga0059261_0471 0.72 +0.4 460,357 + Ga0059261_0471 0.72 +0.2 460,357 + Ga0059261_0471 0.72 -1.0 460,358 - Ga0059261_0471 0.73 +1.0 460,358 - Ga0059261_0471 0.73 -0.2 460,358 - Ga0059261_0471 0.73 +0.5 460,358 - Ga0059261_0471 0.73 +0.2 460,513 + Ga0059261_0471 0.88 +0.2 460,513 + Ga0059261_0471 0.88 -0.5 460,513 + Ga0059261_0471 0.88 +0.4 460,513 + Ga0059261_0471 0.88 +0.1 460,514 - Ga0059261_0471 0.88 +1.2 460,514 - Ga0059261_0471 0.88 +0.2 460,514 - Ga0059261_0471 0.88 -0.6 460,514 - Ga0059261_0471 0.88 -0.4 460,514 - Ga0059261_0471 0.88 +0.1 460,514 - Ga0059261_0471 0.88 -0.9 460,514 - Ga0059261_0471 0.88 +0.2 460,515 + Ga0059261_0471 0.89 +0.0 460,515 + Ga0059261_0471 0.89 +0.2 460,515 + Ga0059261_0471 0.89 -0.4 460,528 + Ga0059261_0471 0.90 +0.3 460,528 + Ga0059261_0471 0.90 -0.9 460,529 - -0.9 460,529 - -1.7 460,529 - +0.0 460,641 + -0.4 460,641 + +0.9 460,641 + -0.6 460,642 - +0.7 460,738 - Ga0059261_0472 0.20 -0.1 460,738 - Ga0059261_0472 0.20 -0.1 460,738 - Ga0059261_0472 0.20 -0.8 461,023 - Ga0059261_0472 0.83 +0.0 461,023 - Ga0059261_0472 0.83 +0.2 461,045 + Ga0059261_0472 0.88 -1.0 461,045 + Ga0059261_0472 0.88 +0.9 461,096 + +0.1 461,096 + -0.3 461,096 + +0.9 461,097 - +0.0 461,097 - +0.2 461,149 + +0.0 461,149 + -0.2 461,149 + +0.3 461,150 - -1.2 461,150 - -0.3 461,150 - +0.2 461,165 + -0.2 461,165 + +0.1 461,166 - +0.2 461,166 - +0.9 461,191 + -0.2 461,191 + +0.4 461,193 + -0.5 461,193 + +1.8 461,193 + -0.3 461,193 + +0.8 461,193 + -1.0 461,193 + +0.3 461,194 - +0.3 461,194 - +1.4 461,194 - -0.2 461,194 - -0.4 461,194 - -0.1 461,194 - -0.1 461,194 - +0.4 461,219 + +0.2 461,220 - +0.1 461,234 + -1.3 461,234 + +0.1 461,237 + -0.2 461,237 + +0.6 461,237 + -0.7 461,238 - +1.8 461,251 - +0.1 461,303 + Ga0059261_0473 0.30 +2.3 461,303 + Ga0059261_0473 0.30 +0.5 461,303 + Ga0059261_0473 0.30 -0.1 461,303 + Ga0059261_0473 0.30 +0.4 461,304 - Ga0059261_0473 0.31 -0.3 461,304 - Ga0059261_0473 0.31 +0.3 461,359 - Ga0059261_0473 0.61 +0.3 461,440 + -0.5 461,441 + -0.3 461,441 + +0.9 461,441 + +0.2 461,441 + -0.8 461,441 + +0.8 461,442 - -0.0 461,442 - +0.4 461,442 - -0.0 461,442 - +1.4 461,442 - -0.0 461,442 - -0.3 461,442 - -0.3 461,442 - +0.0 461,520 + Ga0059261_0474 0.10 -0.3 461,520 + Ga0059261_0474 0.10 -2.9 461,520 + Ga0059261_0474 0.10 -1.2 461,520 + Ga0059261_0474 0.10 +0.0 461,520 + Ga0059261_0474 0.10 -0.2 461,521 - Ga0059261_0474 0.10 -0.8 461,521 - Ga0059261_0474 0.10 +0.2 461,521 - Ga0059261_0474 0.10 +0.2 461,521 - Ga0059261_0474 0.10 -0.3 461,521 - Ga0059261_0474 0.10 +0.5 461,521 - Ga0059261_0474 0.10 -1.6 461,521 - Ga0059261_0474 0.10 -0.9 461,521 - Ga0059261_0474 0.10 +0.3 461,521 - Ga0059261_0474 0.10 -0.4 461,658 - Ga0059261_0474 0.25 +0.2 461,709 - Ga0059261_0474 0.30 -0.5 461,744 - Ga0059261_0474 0.34 -0.4 461,744 - Ga0059261_0474 0.34 -0.3 461,744 - Ga0059261_0474 0.34 -0.0 461,768 + Ga0059261_0474 0.36 +0.6 461,810 - Ga0059261_0474 0.41 +0.0 461,810 - Ga0059261_0474 0.41 -0.1 461,825 + Ga0059261_0474 0.42 +1.4 461,825 + Ga0059261_0474 0.42 +0.7 461,826 - Ga0059261_0474 0.43 -0.4 461,826 - Ga0059261_0474 0.43 -0.3 461,828 + Ga0059261_0474 0.43 -0.8 461,828 + Ga0059261_0474 0.43 +0.0 461,828 + Ga0059261_0474 0.43 +0.7 461,828 + Ga0059261_0474 0.43 -0.1 461,829 - Ga0059261_0474 0.43 +0.4 461,829 - Ga0059261_0474 0.43 +0.7 461,829 - Ga0059261_0474 0.43 +0.5 461,940 - Ga0059261_0474 0.55 +0.3 462,004 + Ga0059261_0474 0.61 +0.8 462,005 - Ga0059261_0474 0.61 -0.7 462,036 + Ga0059261_0474 0.65 +1.8 462,099 - Ga0059261_0474 0.71 +0.0 462,110 - +0.2 462,110 - Ga0059261_0474 0.73 +0.4 462,110 - Ga0059261_0474 0.73 +0.1 462,110 - Ga0059261_0474 0.73 -0.0 462,139 + Ga0059261_0474 0.76 +0.5 462,140 - Ga0059261_0474 0.76 +0.2 462,140 - Ga0059261_0474 0.76 +0.0 462,140 - Ga0059261_0474 0.76 +1.6 462,145 + Ga0059261_0474 0.76 -1.4 462,145 + Ga0059261_0474 0.76 +0.6 462,145 + Ga0059261_0474 0.76 -0.1 462,145 + Ga0059261_0474 0.76 -0.3 462,145 + Ga0059261_0474 0.76 -1.1 462,145 + Ga0059261_0474 0.76 -2.4 462,145 + Ga0059261_0474 0.76 -0.3 462,145 + Ga0059261_0474 0.76 -2.2 462,145 + Ga0059261_0474 0.76 -0.5 462,145 + Ga0059261_0474 0.76 +0.0 462,146 - Ga0059261_0474 0.76 +1.1 462,146 - Ga0059261_0474 0.76 -0.7 462,146 - Ga0059261_0474 0.76 -0.1 462,146 - Ga0059261_0474 0.76 -0.2 462,146 - Ga0059261_0474 0.76 -0.7 462,146 - Ga0059261_0474 0.76 -0.3 462,146 - Ga0059261_0474 0.76 -2.0 462,146 - Ga0059261_0474 0.76 +0.1 462,146 - Ga0059261_0474 0.76 -0.8 462,150 + -0.2 462,151 - Ga0059261_0474 0.77 -1.1 462,188 + Ga0059261_0474 0.81 +0.2 462,189 - Ga0059261_0474 0.81 -0.2 462,215 + Ga0059261_0474 0.84 +0.3 462,215 + Ga0059261_0474 0.84 +0.1 462,215 + Ga0059261_0474 0.84 +0.6 462,215 + Ga0059261_0474 0.84 -0.1 462,216 - Ga0059261_0474 0.84 -0.7 462,216 - Ga0059261_0474 0.84 +0.6 462,216 - Ga0059261_0474 0.84 +0.6 462,230 - Ga0059261_0474 0.85 +0.2 462,237 + Ga0059261_0474 0.86 -0.2 462,237 + Ga0059261_0474 0.86 -0.8 462,299 + +0.3 462,299 + +1.2 462,299 + -0.3 462,299 + -1.0 462,300 - +0.5 462,369 + +1.2 462,369 + +0.4 462,369 + -0.6 462,369 + +0.4 462,369 + -0.8 462,369 + -0.2 462,369 + -3.0 462,369 + +1.8 462,370 - -0.6 462,370 - -0.5 462,370 - -0.9 462,370 - +0.0 462,370 - +0.1 462,372 + +0.1 462,373 - +0.6 462,373 - +0.2 462,373 - +1.0 462,377 + +0.0 462,378 - -0.0 462,387 - -0.4 462,387 - +0.1
Or see this region's nucleotide sequence