Experiment: Choline Lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0338 and Ga0059261_0339 are separated by 81 nucleotides Ga0059261_0339 and Ga0059261_0340 are separated by 14 nucleotides Ga0059261_0340 and Ga0059261_0341 are separated by 85 nucleotides
Ga0059261_0338: Ga0059261_0338 - DNA-directed DNA polymerase III (polc), at 322,630 to 326,112
_0338
Ga0059261_0339: Ga0059261_0339 - Glutathione peroxidase, at 326,194 to 326,673
_0339
Ga0059261_0340: Ga0059261_0340 - Bacterial protein of unknown function (DUF937), at 326,688 to 327,260
_0340
Ga0059261_0341: Ga0059261_0341 - ABC-type antimicrobial peptide transport system, ATPase component, at 327,346 to 328,020
_0341
Position (kb) 326
327 Strain fitness (log2 ratio) -2
-1
0
1 at 326.122 kb on - strand at 326.124 kb on - strand at 326.124 kb on - strand at 326.124 kb on - strand at 326.124 kb on - strand at 326.174 kb on - strand at 326.174 kb on - strand at 326.174 kb on - strand at 326.192 kb on + strand at 326.195 kb on + strand at 326.195 kb on + strand at 326.195 kb on + strand at 326.195 kb on + strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.223 kb on + strand at 326.223 kb on + strand at 326.223 kb on + strand at 326.224 kb on - strand at 326.250 kb on - strand, within Ga0059261_0339 at 326.355 kb on - strand, within Ga0059261_0339 at 326.418 kb on - strand, within Ga0059261_0339 at 326.519 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.610 kb on - strand, within Ga0059261_0339 at 326.878 kb on + strand, within Ga0059261_0340 at 326.878 kb on + strand, within Ga0059261_0340 at 326.878 kb on + strand, within Ga0059261_0340 at 326.878 kb on + strand, within Ga0059261_0340 at 326.879 kb on - strand, within Ga0059261_0340 at 326.879 kb on - strand, within Ga0059261_0340 at 327.314 kb on + strand at 327.314 kb on + strand at 327.314 kb on + strand at 327.314 kb on + strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.316 kb on + strand at 327.316 kb on + strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.342 kb on + strand at 327.342 kb on + strand at 327.342 kb on + strand at 327.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 5 mM remove 326,122 - -1.7 326,124 - -0.2 326,124 - +1.1 326,124 - -0.3 326,124 - -0.2 326,174 - +0.6 326,174 - +1.1 326,174 - -0.9 326,192 + +0.2 326,195 + -0.9 326,195 + -0.1 326,195 + -1.1 326,195 + +0.5 326,196 - +0.1 326,196 - +1.1 326,196 - -0.2 326,196 - -0.1 326,196 - -1.4 326,196 - +1.5 326,196 - -0.5 326,223 + -0.6 326,223 + +0.5 326,223 + -0.9 326,224 - -0.3 326,250 - Ga0059261_0339 0.12 +0.1 326,355 - Ga0059261_0339 0.34 +0.3 326,418 - Ga0059261_0339 0.47 +0.2 326,519 + Ga0059261_0339 0.68 -0.7 326,549 + Ga0059261_0339 0.74 +0.1 326,549 + Ga0059261_0339 0.74 +0.8 326,549 + Ga0059261_0339 0.74 -0.4 326,549 + Ga0059261_0339 0.74 -0.0 326,549 + Ga0059261_0339 0.74 +0.9 326,549 + Ga0059261_0339 0.74 +1.1 326,549 + Ga0059261_0339 0.74 +1.5 326,550 - Ga0059261_0339 0.74 -0.3 326,550 - Ga0059261_0339 0.74 +0.3 326,550 - Ga0059261_0339 0.74 +0.6 326,550 - Ga0059261_0339 0.74 +0.5 326,550 - Ga0059261_0339 0.74 +1.0 326,550 - Ga0059261_0339 0.74 +0.2 326,550 - Ga0059261_0339 0.74 -0.1 326,550 - Ga0059261_0339 0.74 +0.0 326,550 - Ga0059261_0339 0.74 +0.4 326,609 + Ga0059261_0339 0.86 +0.2 326,609 + Ga0059261_0339 0.86 -0.6 326,609 + Ga0059261_0339 0.86 +0.0 326,609 + Ga0059261_0339 0.86 -0.6 326,609 + Ga0059261_0339 0.86 +0.4 326,610 - Ga0059261_0339 0.87 +0.2 326,878 + Ga0059261_0340 0.33 -0.9 326,878 + Ga0059261_0340 0.33 +0.5 326,878 + Ga0059261_0340 0.33 +0.3 326,878 + Ga0059261_0340 0.33 -0.5 326,879 - Ga0059261_0340 0.33 -0.4 326,879 - Ga0059261_0340 0.33 -0.0 327,314 + +0.2 327,314 + -0.2 327,314 + -0.1 327,314 + -1.3 327,315 - -0.1 327,315 - -0.2 327,315 - -0.3 327,315 - +0.5 327,315 - -2.4 327,315 - +0.5 327,315 - +0.5 327,315 - -2.5 327,316 + -0.5 327,316 + +0.1 327,317 - +0.6 327,317 - +0.1 327,317 - -0.3 327,317 - -0.1 327,317 - +0.6 327,317 - -0.1 327,342 + +1.1 327,342 + +0.7 327,342 + -0.1 327,343 - +0.4
Or see this region's nucleotide sequence