Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02637

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02635 and CCNA_02636 are separated by 91 nucleotidesCCNA_02636 and CCNA_02637 are separated by 101 nucleotidesCCNA_02637 and CCNA_02638 are separated by 3 nucleotides CCNA_02635: CCNA_02635 - cell division protein FtsW, at 2,786,329 to 2,787,501 _02635 CCNA_02636: CCNA_02636 - hypothetical protein, at 2,787,593 to 2,787,991 _02636 CCNA_02637: CCNA_02637 - PAS-family sensor histidine kinase, at 2,788,093 to 2,789,109 _02637 CCNA_02638: CCNA_02638 - CLC voltage-gated chloride channel, at 2,789,113 to 2,790,969 _02638 Position (kb) 2788 2789 2790Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2787.546 kb on + strandat 2787.547 kb on + strandat 2787.547 kb on + strandat 2787.555 kb on - strandat 2787.555 kb on - strandat 2787.555 kb on - strandat 2787.580 kb on + strandat 2787.595 kb on + strandat 2787.598 kb on - strandat 2787.627 kb on + strandat 2787.627 kb on - strandat 2787.644 kb on - strand, within CCNA_02636at 2787.646 kb on + strand, within CCNA_02636at 2787.646 kb on + strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.659 kb on + strand, within CCNA_02636at 2787.659 kb on + strand, within CCNA_02636at 2787.666 kb on + strand, within CCNA_02636at 2787.671 kb on + strand, within CCNA_02636at 2787.671 kb on + strand, within CCNA_02636at 2787.731 kb on - strand, within CCNA_02636at 2787.749 kb on + strand, within CCNA_02636at 2787.749 kb on + strand, within CCNA_02636at 2787.763 kb on + strand, within CCNA_02636at 2787.780 kb on + strand, within CCNA_02636at 2787.810 kb on - strand, within CCNA_02636at 2787.833 kb on - strand, within CCNA_02636at 2787.856 kb on + strand, within CCNA_02636at 2787.874 kb on + strand, within CCNA_02636at 2787.888 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.916 kb on - strand, within CCNA_02636at 2787.933 kb on - strand, within CCNA_02636at 2787.961 kb on + strandat 2788.035 kb on - strandat 2788.085 kb on + strandat 2788.092 kb on - strandat 2788.120 kb on + strandat 2788.128 kb on - strandat 2788.128 kb on - strandat 2788.128 kb on - strandat 2788.138 kb on - strandat 2788.139 kb on - strandat 2788.145 kb on + strandat 2788.165 kb on + strandat 2788.173 kb on - strandat 2788.183 kb on - strandat 2788.198 kb on - strand, within CCNA_02637at 2788.224 kb on + strand, within CCNA_02637at 2788.224 kb on + strand, within CCNA_02637at 2788.250 kb on + strand, within CCNA_02637at 2788.275 kb on + strand, within CCNA_02637at 2788.275 kb on + strand, within CCNA_02637at 2788.275 kb on + strand, within CCNA_02637at 2788.304 kb on + strand, within CCNA_02637at 2788.319 kb on + strand, within CCNA_02637at 2788.395 kb on - strand, within CCNA_02637at 2788.409 kb on + strand, within CCNA_02637at 2788.414 kb on - strand, within CCNA_02637at 2788.519 kb on + strand, within CCNA_02637at 2788.558 kb on - strand, within CCNA_02637at 2788.591 kb on + strand, within CCNA_02637at 2788.618 kb on + strand, within CCNA_02637at 2788.665 kb on - strand, within CCNA_02637at 2788.666 kb on + strand, within CCNA_02637at 2788.666 kb on + strand, within CCNA_02637at 2788.666 kb on + strand, within CCNA_02637at 2788.674 kb on - strand, within CCNA_02637at 2788.690 kb on - strand, within CCNA_02637at 2788.690 kb on - strand, within CCNA_02637at 2788.772 kb on - strand, within CCNA_02637at 2788.775 kb on + strand, within CCNA_02637at 2788.783 kb on - strand, within CCNA_02637at 2788.798 kb on + strand, within CCNA_02637at 2788.806 kb on - strand, within CCNA_02637at 2788.806 kb on - strand, within CCNA_02637at 2788.833 kb on + strand, within CCNA_02637at 2788.836 kb on + strand, within CCNA_02637at 2788.856 kb on - strand, within CCNA_02637at 2788.902 kb on + strandat 2788.902 kb on + strand, within CCNA_02637at 2788.910 kb on - strand, within CCNA_02637at 2788.910 kb on - strand, within CCNA_02637at 2788.913 kb on + strand, within CCNA_02637at 2788.939 kb on - strand, within CCNA_02637at 2788.982 kb on + strand, within CCNA_02637at 2789.018 kb on + strandat 2789.025 kb on - strandat 2789.025 kb on - strandat 2789.026 kb on - strandat 2789.038 kb on + strandat 2789.046 kb on - strandat 2789.051 kb on - strandat 2789.064 kb on + strandat 2789.098 kb on + strandat 2789.100 kb on + strandat 2789.106 kb on - strandat 2789.106 kb on - strandat 2789.108 kb on - strandat 2789.110 kb on + strandat 2789.110 kb on + strandat 2789.110 kb on + strandat 2789.141 kb on - strandat 2789.157 kb on - strandat 2789.215 kb on + strandat 2789.224 kb on - strandat 2789.250 kb on + strandat 2789.258 kb on - strandat 2789.298 kb on - strandat 2789.349 kb on + strand, within CCNA_02638at 2789.404 kb on + strand, within CCNA_02638at 2789.463 kb on - strand, within CCNA_02638at 2789.468 kb on - strand, within CCNA_02638at 2789.581 kb on + strand, within CCNA_02638at 2789.585 kb on - strand, within CCNA_02638at 2789.596 kb on + strand, within CCNA_02638at 2789.610 kb on - strand, within CCNA_02638at 2789.621 kb on - strand, within CCNA_02638at 2789.638 kb on + strand, within CCNA_02638at 2789.646 kb on - strand, within CCNA_02638at 2789.687 kb on + strand, within CCNA_02638at 2789.689 kb on + strand, within CCNA_02638at 2789.733 kb on - strand, within CCNA_02638at 2789.767 kb on + strand, within CCNA_02638at 2789.772 kb on + strand, within CCNA_02638at 2789.775 kb on - strandat 2789.802 kb on + strand, within CCNA_02638at 2789.809 kb on + strand, within CCNA_02638at 2789.817 kb on - strand, within CCNA_02638at 2789.817 kb on - strand, within CCNA_02638at 2789.828 kb on + strand, within CCNA_02638at 2789.828 kb on + strand, within CCNA_02638at 2789.828 kb on + strand, within CCNA_02638at 2789.836 kb on - strand, within CCNA_02638at 2789.836 kb on - strand, within CCNA_02638at 2789.836 kb on - strand, within CCNA_02638at 2789.836 kb on - strand, within CCNA_02638at 2789.843 kb on + strand, within CCNA_02638at 2789.851 kb on - strand, within CCNA_02638at 2789.897 kb on + strand, within CCNA_02638at 2789.916 kb on - strand, within CCNA_02638at 2789.917 kb on + strand, within CCNA_02638at 2789.922 kb on - strand, within CCNA_02638at 2789.925 kb on - strand, within CCNA_02638at 2789.983 kb on + strand, within CCNA_02638at 2789.983 kb on + strand, within CCNA_02638at 2789.991 kb on - strand, within CCNA_02638at 2789.992 kb on - strand, within CCNA_02638at 2790.004 kb on - strand, within CCNA_02638at 2790.073 kb on + strand, within CCNA_02638at 2790.092 kb on + strand, within CCNA_02638at 2790.092 kb on + strand, within CCNA_02638at 2790.097 kb on + strand, within CCNA_02638at 2790.097 kb on + strand, within CCNA_02638at 2790.097 kb on + strand, within CCNA_02638at 2790.105 kb on - strand, within CCNA_02638

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,787,546 + -0.8
2,787,547 + -1.0
2,787,547 + -1.4
2,787,555 - -0.7
2,787,555 - -1.8
2,787,555 - -0.3
2,787,580 + -0.6
2,787,595 + -0.7
2,787,598 - -1.3
2,787,627 + +0.8
2,787,627 - -0.7
2,787,644 - CCNA_02636 0.13 -0.8
2,787,646 + CCNA_02636 0.13 +1.0
2,787,646 + CCNA_02636 0.13 -1.9
2,787,654 - CCNA_02636 0.15 -2.3
2,787,654 - CCNA_02636 0.15 +0.3
2,787,654 - CCNA_02636 0.15 -0.3
2,787,654 - CCNA_02636 0.15 -1.7
2,787,659 + CCNA_02636 0.17 +1.5
2,787,659 + CCNA_02636 0.17 +0.5
2,787,666 + CCNA_02636 0.18 +2.5
2,787,671 + CCNA_02636 0.20 -0.3
2,787,671 + CCNA_02636 0.20 +1.1
2,787,731 - CCNA_02636 0.35 -0.3
2,787,749 + CCNA_02636 0.39 +0.6
2,787,749 + CCNA_02636 0.39 +0.5
2,787,763 + CCNA_02636 0.43 -0.7
2,787,780 + CCNA_02636 0.47 +0.7
2,787,810 - CCNA_02636 0.54 -2.2
2,787,833 - CCNA_02636 0.60 -0.8
2,787,856 + CCNA_02636 0.66 -0.3
2,787,874 + CCNA_02636 0.70 +1.4
2,787,888 + CCNA_02636 0.74 +1.2
2,787,908 + CCNA_02636 0.79 +0.6
2,787,908 + CCNA_02636 0.79 +0.5
2,787,908 + CCNA_02636 0.79 -0.7
2,787,908 + CCNA_02636 0.79 -0.3
2,787,908 + CCNA_02636 0.79 +1.5
2,787,908 + CCNA_02636 0.79 +0.7
2,787,916 - CCNA_02636 0.81 -1.6
2,787,933 - CCNA_02636 0.85 -1.4
2,787,961 + -0.2
2,788,035 - -2.3
2,788,085 + -1.3
2,788,092 - -0.3
2,788,120 + +0.5
2,788,128 - -0.2
2,788,128 - -2.1
2,788,128 - +0.1
2,788,138 - -2.7
2,788,139 - -2.4
2,788,145 + -1.6
2,788,165 + +1.1
2,788,173 - -0.9
2,788,183 - -1.1
2,788,198 - CCNA_02637 0.10 -1.9
2,788,224 + CCNA_02637 0.13 -0.7
2,788,224 + CCNA_02637 0.13 -0.5
2,788,250 + CCNA_02637 0.15 -0.8
2,788,275 + CCNA_02637 0.18 -2.1
2,788,275 + CCNA_02637 0.18 -1.2
2,788,275 + CCNA_02637 0.18 +0.3
2,788,304 + CCNA_02637 0.21 +0.9
2,788,319 + CCNA_02637 0.22 -1.5
2,788,395 - CCNA_02637 0.30 -0.7
2,788,409 + CCNA_02637 0.31 -0.3
2,788,414 - CCNA_02637 0.32 -0.8
2,788,519 + CCNA_02637 0.42 +0.6
2,788,558 - CCNA_02637 0.46 -1.6
2,788,591 + CCNA_02637 0.49 +1.3
2,788,618 + CCNA_02637 0.52 +0.5
2,788,665 - CCNA_02637 0.56 +0.1
2,788,666 + CCNA_02637 0.56 -0.4
2,788,666 + CCNA_02637 0.56 -0.1
2,788,666 + CCNA_02637 0.56 -0.1
2,788,674 - CCNA_02637 0.57 +0.1
2,788,690 - CCNA_02637 0.59 +2.1
2,788,690 - CCNA_02637 0.59 +0.3
2,788,772 - CCNA_02637 0.67 -2.6
2,788,775 + CCNA_02637 0.67 +1.3
2,788,783 - CCNA_02637 0.68 -2.1
2,788,798 + CCNA_02637 0.69 -1.8
2,788,806 - CCNA_02637 0.70 -1.1
2,788,806 - CCNA_02637 0.70 -0.0
2,788,833 + CCNA_02637 0.73 -1.0
2,788,836 + CCNA_02637 0.73 -0.6
2,788,856 - CCNA_02637 0.75 -1.8
2,788,902 + +0.9
2,788,902 + CCNA_02637 0.80 -0.3
2,788,910 - CCNA_02637 0.80 -0.7
2,788,910 - CCNA_02637 0.80 +0.8
2,788,913 + CCNA_02637 0.81 -0.3
2,788,939 - CCNA_02637 0.83 -0.0
2,788,982 + CCNA_02637 0.87 -1.0
2,789,018 + -1.9
2,789,025 - +0.9
2,789,025 - -0.6
2,789,026 - -0.8
2,789,038 + -1.2
2,789,046 - -1.4
2,789,051 - -1.1
2,789,064 + -1.5
2,789,098 + +0.1
2,789,100 + -0.4
2,789,106 - +0.0
2,789,106 - -1.4
2,789,108 - -2.9
2,789,110 + +0.4
2,789,110 + -0.6
2,789,110 + -0.5
2,789,141 - +0.2
2,789,157 - -1.4
2,789,215 + +0.7
2,789,224 - -0.8
2,789,250 + -0.7
2,789,258 - +0.3
2,789,298 - -0.6
2,789,349 + CCNA_02638 0.13 -1.8
2,789,404 + CCNA_02638 0.16 -1.1
2,789,463 - CCNA_02638 0.19 +0.3
2,789,468 - CCNA_02638 0.19 -0.9
2,789,581 + CCNA_02638 0.25 +2.9
2,789,585 - CCNA_02638 0.25 -0.7
2,789,596 + CCNA_02638 0.26 -1.1
2,789,610 - CCNA_02638 0.27 -0.8
2,789,621 - CCNA_02638 0.27 -1.5
2,789,638 + CCNA_02638 0.28 -2.5
2,789,646 - CCNA_02638 0.29 -0.5
2,789,687 + CCNA_02638 0.31 +2.1
2,789,689 + CCNA_02638 0.31 -1.2
2,789,733 - CCNA_02638 0.33 +0.9
2,789,767 + CCNA_02638 0.35 -0.9
2,789,772 + CCNA_02638 0.35 -0.1
2,789,775 - +2.9
2,789,802 + CCNA_02638 0.37 -1.8
2,789,809 + CCNA_02638 0.37 -0.3
2,789,817 - CCNA_02638 0.38 +0.4
2,789,817 - CCNA_02638 0.38 +0.5
2,789,828 + CCNA_02638 0.39 -1.5
2,789,828 + CCNA_02638 0.39 -1.4
2,789,828 + CCNA_02638 0.39 -0.6
2,789,836 - CCNA_02638 0.39 -1.6
2,789,836 - CCNA_02638 0.39 -0.4
2,789,836 - CCNA_02638 0.39 +0.0
2,789,836 - CCNA_02638 0.39 -2.2
2,789,843 + CCNA_02638 0.39 -1.5
2,789,851 - CCNA_02638 0.40 -0.3
2,789,897 + CCNA_02638 0.42 +0.1
2,789,916 - CCNA_02638 0.43 -0.0
2,789,917 + CCNA_02638 0.43 +0.1
2,789,922 - CCNA_02638 0.44 -0.1
2,789,925 - CCNA_02638 0.44 -1.8
2,789,983 + CCNA_02638 0.47 -2.0
2,789,983 + CCNA_02638 0.47 -1.0
2,789,991 - CCNA_02638 0.47 -0.3
2,789,992 - CCNA_02638 0.47 +1.5
2,790,004 - CCNA_02638 0.48 +1.4
2,790,073 + CCNA_02638 0.52 -0.6
2,790,092 + CCNA_02638 0.53 -1.9
2,790,092 + CCNA_02638 0.53 -0.6
2,790,097 + CCNA_02638 0.53 -3.2
2,790,097 + CCNA_02638 0.53 -1.2
2,790,097 + CCNA_02638 0.53 -0.0
2,790,105 - CCNA_02638 0.53 -2.0

Or see this region's nucleotide sequence