Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02635 and CCNA_02636 are separated by 91 nucleotides CCNA_02636 and CCNA_02637 are separated by 101 nucleotides CCNA_02637 and CCNA_02638 are separated by 3 nucleotides
CCNA_02635: CCNA_02635 - cell division protein FtsW, at 2,786,329 to 2,787,501
_02635
CCNA_02636: CCNA_02636 - hypothetical protein, at 2,787,593 to 2,787,991
_02636
CCNA_02637: CCNA_02637 - PAS-family sensor histidine kinase, at 2,788,093 to 2,789,109
_02637
CCNA_02638: CCNA_02638 - CLC voltage-gated chloride channel, at 2,789,113 to 2,790,969
_02638
Position (kb)
2788
2789
2790 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2787.546 kb on + strand at 2787.547 kb on + strand at 2787.547 kb on + strand at 2787.555 kb on - strand at 2787.555 kb on - strand at 2787.555 kb on - strand at 2787.580 kb on + strand at 2787.595 kb on + strand at 2787.598 kb on - strand at 2787.627 kb on + strand at 2787.627 kb on - strand at 2787.644 kb on - strand, within CCNA_02636 at 2787.646 kb on + strand, within CCNA_02636 at 2787.646 kb on + strand, within CCNA_02636 at 2787.654 kb on - strand, within CCNA_02636 at 2787.654 kb on - strand, within CCNA_02636 at 2787.654 kb on - strand, within CCNA_02636 at 2787.654 kb on - strand, within CCNA_02636 at 2787.659 kb on + strand, within CCNA_02636 at 2787.659 kb on + strand, within CCNA_02636 at 2787.666 kb on + strand, within CCNA_02636 at 2787.671 kb on + strand, within CCNA_02636 at 2787.671 kb on + strand, within CCNA_02636 at 2787.731 kb on - strand, within CCNA_02636 at 2787.749 kb on + strand, within CCNA_02636 at 2787.749 kb on + strand, within CCNA_02636 at 2787.763 kb on + strand, within CCNA_02636 at 2787.780 kb on + strand, within CCNA_02636 at 2787.810 kb on - strand, within CCNA_02636 at 2787.833 kb on - strand, within CCNA_02636 at 2787.856 kb on + strand, within CCNA_02636 at 2787.874 kb on + strand, within CCNA_02636 at 2787.888 kb on + strand, within CCNA_02636 at 2787.908 kb on + strand, within CCNA_02636 at 2787.908 kb on + strand, within CCNA_02636 at 2787.908 kb on + strand, within CCNA_02636 at 2787.908 kb on + strand, within CCNA_02636 at 2787.908 kb on + strand, within CCNA_02636 at 2787.908 kb on + strand, within CCNA_02636 at 2787.916 kb on - strand, within CCNA_02636 at 2787.933 kb on - strand, within CCNA_02636 at 2787.961 kb on + strand at 2788.035 kb on - strand at 2788.085 kb on + strand at 2788.092 kb on - strand at 2788.120 kb on + strand at 2788.128 kb on - strand at 2788.128 kb on - strand at 2788.128 kb on - strand at 2788.138 kb on - strand at 2788.139 kb on - strand at 2788.145 kb on + strand at 2788.165 kb on + strand at 2788.173 kb on - strand at 2788.183 kb on - strand at 2788.198 kb on - strand, within CCNA_02637 at 2788.224 kb on + strand, within CCNA_02637 at 2788.224 kb on + strand, within CCNA_02637 at 2788.250 kb on + strand, within CCNA_02637 at 2788.275 kb on + strand, within CCNA_02637 at 2788.275 kb on + strand, within CCNA_02637 at 2788.275 kb on + strand, within CCNA_02637 at 2788.304 kb on + strand, within CCNA_02637 at 2788.319 kb on + strand, within CCNA_02637 at 2788.395 kb on - strand, within CCNA_02637 at 2788.409 kb on + strand, within CCNA_02637 at 2788.414 kb on - strand, within CCNA_02637 at 2788.519 kb on + strand, within CCNA_02637 at 2788.558 kb on - strand, within CCNA_02637 at 2788.591 kb on + strand, within CCNA_02637 at 2788.618 kb on + strand, within CCNA_02637 at 2788.665 kb on - strand, within CCNA_02637 at 2788.666 kb on + strand, within CCNA_02637 at 2788.666 kb on + strand, within CCNA_02637 at 2788.666 kb on + strand, within CCNA_02637 at 2788.674 kb on - strand, within CCNA_02637 at 2788.690 kb on - strand, within CCNA_02637 at 2788.690 kb on - strand, within CCNA_02637 at 2788.772 kb on - strand, within CCNA_02637 at 2788.775 kb on + strand, within CCNA_02637 at 2788.783 kb on - strand, within CCNA_02637 at 2788.798 kb on + strand, within CCNA_02637 at 2788.806 kb on - strand, within CCNA_02637 at 2788.806 kb on - strand, within CCNA_02637 at 2788.833 kb on + strand, within CCNA_02637 at 2788.836 kb on + strand, within CCNA_02637 at 2788.856 kb on - strand, within CCNA_02637 at 2788.902 kb on + strand at 2788.902 kb on + strand, within CCNA_02637 at 2788.910 kb on - strand, within CCNA_02637 at 2788.910 kb on - strand, within CCNA_02637 at 2788.913 kb on + strand, within CCNA_02637 at 2788.939 kb on - strand, within CCNA_02637 at 2788.982 kb on + strand, within CCNA_02637 at 2789.018 kb on + strand at 2789.025 kb on - strand at 2789.025 kb on - strand at 2789.026 kb on - strand at 2789.038 kb on + strand at 2789.046 kb on - strand at 2789.051 kb on - strand at 2789.064 kb on + strand at 2789.098 kb on + strand at 2789.100 kb on + strand at 2789.106 kb on - strand at 2789.106 kb on - strand at 2789.108 kb on - strand at 2789.110 kb on + strand at 2789.110 kb on + strand at 2789.110 kb on + strand at 2789.141 kb on - strand at 2789.157 kb on - strand at 2789.215 kb on + strand at 2789.224 kb on - strand at 2789.250 kb on + strand at 2789.258 kb on - strand at 2789.298 kb on - strand at 2789.349 kb on + strand, within CCNA_02638 at 2789.404 kb on + strand, within CCNA_02638 at 2789.463 kb on - strand, within CCNA_02638 at 2789.468 kb on - strand, within CCNA_02638 at 2789.581 kb on + strand, within CCNA_02638 at 2789.585 kb on - strand, within CCNA_02638 at 2789.596 kb on + strand, within CCNA_02638 at 2789.610 kb on - strand, within CCNA_02638 at 2789.621 kb on - strand, within CCNA_02638 at 2789.638 kb on + strand, within CCNA_02638 at 2789.646 kb on - strand, within CCNA_02638 at 2789.687 kb on + strand, within CCNA_02638 at 2789.689 kb on + strand, within CCNA_02638 at 2789.733 kb on - strand, within CCNA_02638 at 2789.767 kb on + strand, within CCNA_02638 at 2789.772 kb on + strand, within CCNA_02638 at 2789.775 kb on - strand at 2789.802 kb on + strand, within CCNA_02638 at 2789.809 kb on + strand, within CCNA_02638 at 2789.817 kb on - strand, within CCNA_02638 at 2789.817 kb on - strand, within CCNA_02638 at 2789.828 kb on + strand, within CCNA_02638 at 2789.828 kb on + strand, within CCNA_02638 at 2789.828 kb on + strand, within CCNA_02638 at 2789.836 kb on - strand, within CCNA_02638 at 2789.836 kb on - strand, within CCNA_02638 at 2789.836 kb on - strand, within CCNA_02638 at 2789.836 kb on - strand, within CCNA_02638 at 2789.843 kb on + strand, within CCNA_02638 at 2789.851 kb on - strand, within CCNA_02638 at 2789.897 kb on + strand, within CCNA_02638 at 2789.916 kb on - strand, within CCNA_02638 at 2789.917 kb on + strand, within CCNA_02638 at 2789.922 kb on - strand, within CCNA_02638 at 2789.925 kb on - strand, within CCNA_02638 at 2789.983 kb on + strand, within CCNA_02638 at 2789.983 kb on + strand, within CCNA_02638 at 2789.991 kb on - strand, within CCNA_02638 at 2789.992 kb on - strand, within CCNA_02638 at 2790.004 kb on - strand, within CCNA_02638 at 2790.073 kb on + strand, within CCNA_02638 at 2790.092 kb on + strand, within CCNA_02638 at 2790.092 kb on + strand, within CCNA_02638 at 2790.097 kb on + strand, within CCNA_02638 at 2790.097 kb on + strand, within CCNA_02638 at 2790.097 kb on + strand, within CCNA_02638 at 2790.105 kb on - strand, within CCNA_02638
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,787,546 + -0.8 2,787,547 + -1.0 2,787,547 + -1.4 2,787,555 - -0.7 2,787,555 - -1.8 2,787,555 - -0.3 2,787,580 + -0.6 2,787,595 + -0.7 2,787,598 - -1.3 2,787,627 + +0.8 2,787,627 - -0.7 2,787,644 - CCNA_02636 0.13 -0.8 2,787,646 + CCNA_02636 0.13 +1.0 2,787,646 + CCNA_02636 0.13 -1.9 2,787,654 - CCNA_02636 0.15 -2.3 2,787,654 - CCNA_02636 0.15 +0.3 2,787,654 - CCNA_02636 0.15 -0.3 2,787,654 - CCNA_02636 0.15 -1.7 2,787,659 + CCNA_02636 0.17 +1.5 2,787,659 + CCNA_02636 0.17 +0.5 2,787,666 + CCNA_02636 0.18 +2.5 2,787,671 + CCNA_02636 0.20 -0.3 2,787,671 + CCNA_02636 0.20 +1.1 2,787,731 - CCNA_02636 0.35 -0.3 2,787,749 + CCNA_02636 0.39 +0.6 2,787,749 + CCNA_02636 0.39 +0.5 2,787,763 + CCNA_02636 0.43 -0.7 2,787,780 + CCNA_02636 0.47 +0.7 2,787,810 - CCNA_02636 0.54 -2.2 2,787,833 - CCNA_02636 0.60 -0.8 2,787,856 + CCNA_02636 0.66 -0.3 2,787,874 + CCNA_02636 0.70 +1.4 2,787,888 + CCNA_02636 0.74 +1.2 2,787,908 + CCNA_02636 0.79 +0.6 2,787,908 + CCNA_02636 0.79 +0.5 2,787,908 + CCNA_02636 0.79 -0.7 2,787,908 + CCNA_02636 0.79 -0.3 2,787,908 + CCNA_02636 0.79 +1.5 2,787,908 + CCNA_02636 0.79 +0.7 2,787,916 - CCNA_02636 0.81 -1.6 2,787,933 - CCNA_02636 0.85 -1.4 2,787,961 + -0.2 2,788,035 - -2.3 2,788,085 + -1.3 2,788,092 - -0.3 2,788,120 + +0.5 2,788,128 - -0.2 2,788,128 - -2.1 2,788,128 - +0.1 2,788,138 - -2.7 2,788,139 - -2.4 2,788,145 + -1.6 2,788,165 + +1.1 2,788,173 - -0.9 2,788,183 - -1.1 2,788,198 - CCNA_02637 0.10 -1.9 2,788,224 + CCNA_02637 0.13 -0.7 2,788,224 + CCNA_02637 0.13 -0.5 2,788,250 + CCNA_02637 0.15 -0.8 2,788,275 + CCNA_02637 0.18 -2.1 2,788,275 + CCNA_02637 0.18 -1.2 2,788,275 + CCNA_02637 0.18 +0.3 2,788,304 + CCNA_02637 0.21 +0.9 2,788,319 + CCNA_02637 0.22 -1.5 2,788,395 - CCNA_02637 0.30 -0.7 2,788,409 + CCNA_02637 0.31 -0.3 2,788,414 - CCNA_02637 0.32 -0.8 2,788,519 + CCNA_02637 0.42 +0.6 2,788,558 - CCNA_02637 0.46 -1.6 2,788,591 + CCNA_02637 0.49 +1.3 2,788,618 + CCNA_02637 0.52 +0.5 2,788,665 - CCNA_02637 0.56 +0.1 2,788,666 + CCNA_02637 0.56 -0.4 2,788,666 + CCNA_02637 0.56 -0.1 2,788,666 + CCNA_02637 0.56 -0.1 2,788,674 - CCNA_02637 0.57 +0.1 2,788,690 - CCNA_02637 0.59 +2.1 2,788,690 - CCNA_02637 0.59 +0.3 2,788,772 - CCNA_02637 0.67 -2.6 2,788,775 + CCNA_02637 0.67 +1.3 2,788,783 - CCNA_02637 0.68 -2.1 2,788,798 + CCNA_02637 0.69 -1.8 2,788,806 - CCNA_02637 0.70 -1.1 2,788,806 - CCNA_02637 0.70 -0.0 2,788,833 + CCNA_02637 0.73 -1.0 2,788,836 + CCNA_02637 0.73 -0.6 2,788,856 - CCNA_02637 0.75 -1.8 2,788,902 + +0.9 2,788,902 + CCNA_02637 0.80 -0.3 2,788,910 - CCNA_02637 0.80 -0.7 2,788,910 - CCNA_02637 0.80 +0.8 2,788,913 + CCNA_02637 0.81 -0.3 2,788,939 - CCNA_02637 0.83 -0.0 2,788,982 + CCNA_02637 0.87 -1.0 2,789,018 + -1.9 2,789,025 - +0.9 2,789,025 - -0.6 2,789,026 - -0.8 2,789,038 + -1.2 2,789,046 - -1.4 2,789,051 - -1.1 2,789,064 + -1.5 2,789,098 + +0.1 2,789,100 + -0.4 2,789,106 - +0.0 2,789,106 - -1.4 2,789,108 - -2.9 2,789,110 + +0.4 2,789,110 + -0.6 2,789,110 + -0.5 2,789,141 - +0.2 2,789,157 - -1.4 2,789,215 + +0.7 2,789,224 - -0.8 2,789,250 + -0.7 2,789,258 - +0.3 2,789,298 - -0.6 2,789,349 + CCNA_02638 0.13 -1.8 2,789,404 + CCNA_02638 0.16 -1.1 2,789,463 - CCNA_02638 0.19 +0.3 2,789,468 - CCNA_02638 0.19 -0.9 2,789,581 + CCNA_02638 0.25 +2.9 2,789,585 - CCNA_02638 0.25 -0.7 2,789,596 + CCNA_02638 0.26 -1.1 2,789,610 - CCNA_02638 0.27 -0.8 2,789,621 - CCNA_02638 0.27 -1.5 2,789,638 + CCNA_02638 0.28 -2.5 2,789,646 - CCNA_02638 0.29 -0.5 2,789,687 + CCNA_02638 0.31 +2.1 2,789,689 + CCNA_02638 0.31 -1.2 2,789,733 - CCNA_02638 0.33 +0.9 2,789,767 + CCNA_02638 0.35 -0.9 2,789,772 + CCNA_02638 0.35 -0.1 2,789,775 - +2.9 2,789,802 + CCNA_02638 0.37 -1.8 2,789,809 + CCNA_02638 0.37 -0.3 2,789,817 - CCNA_02638 0.38 +0.4 2,789,817 - CCNA_02638 0.38 +0.5 2,789,828 + CCNA_02638 0.39 -1.5 2,789,828 + CCNA_02638 0.39 -1.4 2,789,828 + CCNA_02638 0.39 -0.6 2,789,836 - CCNA_02638 0.39 -1.6 2,789,836 - CCNA_02638 0.39 -0.4 2,789,836 - CCNA_02638 0.39 +0.0 2,789,836 - CCNA_02638 0.39 -2.2 2,789,843 + CCNA_02638 0.39 -1.5 2,789,851 - CCNA_02638 0.40 -0.3 2,789,897 + CCNA_02638 0.42 +0.1 2,789,916 - CCNA_02638 0.43 -0.0 2,789,917 + CCNA_02638 0.43 +0.1 2,789,922 - CCNA_02638 0.44 -0.1 2,789,925 - CCNA_02638 0.44 -1.8 2,789,983 + CCNA_02638 0.47 -2.0 2,789,983 + CCNA_02638 0.47 -1.0 2,789,991 - CCNA_02638 0.47 -0.3 2,789,992 - CCNA_02638 0.47 +1.5 2,790,004 - CCNA_02638 0.48 +1.4 2,790,073 + CCNA_02638 0.52 -0.6 2,790,092 + CCNA_02638 0.53 -1.9 2,790,092 + CCNA_02638 0.53 -0.6 2,790,097 + CCNA_02638 0.53 -3.2 2,790,097 + CCNA_02638 0.53 -1.2 2,790,097 + CCNA_02638 0.53 -0.0 2,790,105 - CCNA_02638 0.53 -2.0
Or see this region's nucleotide sequence