Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02150 and CCNA_02151 are separated by 37 nucleotides CCNA_02151 and CCNA_02152 are separated by 97 nucleotides CCNA_02152 and CCNA_02153 overlap by 4 nucleotides CCNA_02153 and CCNA_02154 are separated by 16 nucleotides
CCNA_02150: CCNA_02150 - dimethylallyltransferase/geranyltranstransferase , at 2,307,274 to 2,308,158
_02150
CCNA_02151: CCNA_02151 - exodeoxyribonuclease VII small subunit, at 2,308,196 to 2,308,450
_02151
CCNA_02152: CCNA_02152 - phosphoglycerate mutase, at 2,308,548 to 2,309,207
_02152
CCNA_02153: CCNA_02153 - acetylspermidine deacetylase, at 2,309,204 to 2,310,124
_02153
CCNA_02154: CCNA_02154 - GCN5-related N-acetyltransferase, at 2,310,141 to 2,310,677
_02154
Position (kb)
2308
2309
2310 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2308.187 kb on + strand at 2308.245 kb on - strand, within CCNA_02151 at 2308.265 kb on - strand, within CCNA_02151 at 2308.280 kb on - strand, within CCNA_02151 at 2308.342 kb on + strand, within CCNA_02151 at 2308.345 kb on - strand, within CCNA_02151 at 2308.345 kb on - strand, within CCNA_02151 at 2308.345 kb on - strand, within CCNA_02151 at 2308.357 kb on + strand, within CCNA_02151 at 2308.385 kb on - strand, within CCNA_02151 at 2308.421 kb on - strand, within CCNA_02151 at 2308.448 kb on - strand at 2308.472 kb on + strand at 2308.478 kb on - strand at 2308.485 kb on - strand at 2308.507 kb on + strand at 2308.515 kb on - strand at 2308.668 kb on - strand, within CCNA_02152 at 2308.772 kb on - strand, within CCNA_02152 at 2308.788 kb on - strand, within CCNA_02152 at 2308.788 kb on - strand, within CCNA_02152 at 2308.877 kb on - strand, within CCNA_02152 at 2308.887 kb on - strand, within CCNA_02152 at 2308.952 kb on + strand, within CCNA_02152 at 2308.977 kb on - strand, within CCNA_02152 at 2309.000 kb on - strand, within CCNA_02152 at 2309.000 kb on - strand, within CCNA_02152 at 2309.010 kb on - strand, within CCNA_02152 at 2309.010 kb on - strand, within CCNA_02152 at 2309.010 kb on - strand, within CCNA_02152 at 2309.011 kb on - strand, within CCNA_02152 at 2309.046 kb on - strand, within CCNA_02152 at 2309.051 kb on - strand, within CCNA_02152 at 2309.066 kb on - strand, within CCNA_02152 at 2309.086 kb on - strand, within CCNA_02152 at 2309.102 kb on + strand, within CCNA_02152 at 2309.133 kb on - strand, within CCNA_02152 at 2309.133 kb on - strand, within CCNA_02152 at 2309.163 kb on + strand at 2309.191 kb on - strand at 2309.210 kb on + strand at 2309.212 kb on + strand at 2309.220 kb on - strand at 2309.228 kb on - strand at 2309.260 kb on + strand at 2309.268 kb on - strand at 2309.285 kb on - strand at 2309.289 kb on + strand at 2309.297 kb on - strand, within CCNA_02153 at 2309.315 kb on - strand, within CCNA_02153 at 2309.315 kb on - strand, within CCNA_02153 at 2309.323 kb on + strand, within CCNA_02153 at 2309.326 kb on - strand, within CCNA_02153 at 2309.356 kb on + strand, within CCNA_02153 at 2309.364 kb on - strand, within CCNA_02153 at 2309.422 kb on + strand, within CCNA_02153 at 2309.444 kb on - strand, within CCNA_02153 at 2309.535 kb on - strand, within CCNA_02153 at 2309.603 kb on - strand, within CCNA_02153 at 2309.610 kb on + strand, within CCNA_02153 at 2309.666 kb on + strand, within CCNA_02153 at 2309.666 kb on + strand, within CCNA_02153 at 2309.673 kb on + strand, within CCNA_02153 at 2309.673 kb on + strand, within CCNA_02153 at 2309.679 kb on - strand, within CCNA_02153 at 2309.681 kb on - strand, within CCNA_02153 at 2309.729 kb on - strand, within CCNA_02153 at 2309.734 kb on - strand, within CCNA_02153 at 2309.772 kb on + strand, within CCNA_02153 at 2309.788 kb on + strand, within CCNA_02153 at 2309.798 kb on - strand, within CCNA_02153 at 2309.867 kb on + strand, within CCNA_02153 at 2309.937 kb on - strand, within CCNA_02153 at 2309.960 kb on - strand, within CCNA_02153 at 2309.965 kb on - strand, within CCNA_02153 at 2309.970 kb on + strand, within CCNA_02153 at 2309.990 kb on + strand, within CCNA_02153 at 2310.002 kb on + strand, within CCNA_02153 at 2310.095 kb on + strand at 2310.103 kb on - strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.131 kb on + strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.139 kb on - strand at 2310.163 kb on - strand at 2310.182 kb on + strand at 2310.205 kb on - strand, within CCNA_02154 at 2310.207 kb on - strand, within CCNA_02154
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,308,187 + -0.1 2,308,245 - CCNA_02151 0.19 +1.7 2,308,265 - CCNA_02151 0.27 +1.0 2,308,280 - CCNA_02151 0.33 +2.5 2,308,342 + CCNA_02151 0.57 -2.3 2,308,345 - CCNA_02151 0.58 +2.0 2,308,345 - CCNA_02151 0.58 +2.2 2,308,345 - CCNA_02151 0.58 +1.3 2,308,357 + CCNA_02151 0.63 +0.1 2,308,385 - CCNA_02151 0.74 +1.8 2,308,421 - CCNA_02151 0.88 +1.1 2,308,448 - +2.2 2,308,472 + +0.2 2,308,478 - +1.2 2,308,485 - +0.1 2,308,507 + -1.5 2,308,515 - +0.1 2,308,668 - CCNA_02152 0.18 -0.1 2,308,772 - CCNA_02152 0.34 -1.1 2,308,788 - CCNA_02152 0.36 -3.4 2,308,788 - CCNA_02152 0.36 -1.8 2,308,877 - CCNA_02152 0.50 -0.1 2,308,887 - CCNA_02152 0.51 -1.2 2,308,952 + CCNA_02152 0.61 -0.6 2,308,977 - CCNA_02152 0.65 -1.4 2,309,000 - CCNA_02152 0.68 -1.6 2,309,000 - CCNA_02152 0.68 -2.5 2,309,010 - CCNA_02152 0.70 -0.1 2,309,010 - CCNA_02152 0.70 -0.9 2,309,010 - CCNA_02152 0.70 -0.9 2,309,011 - CCNA_02152 0.70 -0.8 2,309,046 - CCNA_02152 0.75 -0.9 2,309,051 - CCNA_02152 0.76 -0.4 2,309,066 - CCNA_02152 0.78 -0.5 2,309,086 - CCNA_02152 0.82 -1.3 2,309,102 + CCNA_02152 0.84 -2.7 2,309,133 - CCNA_02152 0.89 -0.5 2,309,133 - CCNA_02152 0.89 +0.3 2,309,163 + -2.1 2,309,191 - +1.6 2,309,210 + -2.1 2,309,212 + +2.2 2,309,220 - +1.2 2,309,228 - +1.4 2,309,260 + -0.5 2,309,268 - -0.8 2,309,285 - +1.2 2,309,289 + +0.2 2,309,297 - CCNA_02153 0.10 +0.1 2,309,315 - CCNA_02153 0.12 +0.5 2,309,315 - CCNA_02153 0.12 -1.4 2,309,323 + CCNA_02153 0.13 -2.2 2,309,326 - CCNA_02153 0.13 +0.4 2,309,356 + CCNA_02153 0.17 -1.3 2,309,364 - CCNA_02153 0.17 -0.3 2,309,422 + CCNA_02153 0.24 -1.7 2,309,444 - CCNA_02153 0.26 +1.3 2,309,535 - CCNA_02153 0.36 +0.9 2,309,603 - CCNA_02153 0.43 -0.2 2,309,610 + CCNA_02153 0.44 -0.1 2,309,666 + CCNA_02153 0.50 -2.8 2,309,666 + CCNA_02153 0.50 +0.8 2,309,673 + CCNA_02153 0.51 -1.8 2,309,673 + CCNA_02153 0.51 +0.1 2,309,679 - CCNA_02153 0.52 -1.2 2,309,681 - CCNA_02153 0.52 -0.8 2,309,729 - CCNA_02153 0.57 +1.2 2,309,734 - CCNA_02153 0.58 +0.3 2,309,772 + CCNA_02153 0.62 +0.6 2,309,788 + CCNA_02153 0.63 -1.8 2,309,798 - CCNA_02153 0.64 +0.6 2,309,867 + CCNA_02153 0.72 -0.1 2,309,937 - CCNA_02153 0.80 +0.9 2,309,960 - CCNA_02153 0.82 +0.7 2,309,965 - CCNA_02153 0.83 +1.6 2,309,970 + CCNA_02153 0.83 -0.4 2,309,990 + CCNA_02153 0.85 -1.8 2,310,002 + CCNA_02153 0.87 -1.4 2,310,095 + -1.1 2,310,103 - -1.8 2,310,131 + +0.5 2,310,131 + -0.9 2,310,131 + -0.5 2,310,131 + -2.5 2,310,131 + -2.5 2,310,131 + -0.6 2,310,131 + -0.2 2,310,131 + -2.1 2,310,131 + -0.3 2,310,131 + +0.5 2,310,131 + -1.4 2,310,131 + +0.8 2,310,131 + -1.2 2,310,139 - +0.2 2,310,139 - -0.6 2,310,139 - +0.8 2,310,139 - +0.5 2,310,139 - -0.6 2,310,139 - +0.7 2,310,139 - -0.8 2,310,139 - +0.2 2,310,139 - +0.3 2,310,139 - +1.5 2,310,139 - +2.8 2,310,139 - +0.2 2,310,139 - -0.8 2,310,139 - -0.3 2,310,139 - +1.0 2,310,139 - -0.9 2,310,139 - -0.9 2,310,139 - -1.1 2,310,139 - -0.4 2,310,139 - -0.4 2,310,139 - +0.1 2,310,139 - -0.1 2,310,139 - -1.1 2,310,163 - -0.2 2,310,182 + +0.1 2,310,205 - CCNA_02154 0.12 -0.5 2,310,207 - CCNA_02154 0.12 +2.0
Or see this region's nucleotide sequence