Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02152

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02150 and CCNA_02151 are separated by 37 nucleotidesCCNA_02151 and CCNA_02152 are separated by 97 nucleotidesCCNA_02152 and CCNA_02153 overlap by 4 nucleotidesCCNA_02153 and CCNA_02154 are separated by 16 nucleotides CCNA_02150: CCNA_02150 - dimethylallyltransferase/geranyltranstransferase , at 2,307,274 to 2,308,158 _02150 CCNA_02151: CCNA_02151 - exodeoxyribonuclease VII small subunit, at 2,308,196 to 2,308,450 _02151 CCNA_02152: CCNA_02152 - phosphoglycerate mutase, at 2,308,548 to 2,309,207 _02152 CCNA_02153: CCNA_02153 - acetylspermidine deacetylase, at 2,309,204 to 2,310,124 _02153 CCNA_02154: CCNA_02154 - GCN5-related N-acetyltransferase, at 2,310,141 to 2,310,677 _02154 Position (kb) 2308 2309 2310Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2308.187 kb on + strandat 2308.245 kb on - strand, within CCNA_02151at 2308.265 kb on - strand, within CCNA_02151at 2308.280 kb on - strand, within CCNA_02151at 2308.342 kb on + strand, within CCNA_02151at 2308.345 kb on - strand, within CCNA_02151at 2308.345 kb on - strand, within CCNA_02151at 2308.345 kb on - strand, within CCNA_02151at 2308.357 kb on + strand, within CCNA_02151at 2308.385 kb on - strand, within CCNA_02151at 2308.421 kb on - strand, within CCNA_02151at 2308.448 kb on - strandat 2308.472 kb on + strandat 2308.478 kb on - strandat 2308.485 kb on - strandat 2308.507 kb on + strandat 2308.515 kb on - strandat 2308.668 kb on - strand, within CCNA_02152at 2308.772 kb on - strand, within CCNA_02152at 2308.788 kb on - strand, within CCNA_02152at 2308.788 kb on - strand, within CCNA_02152at 2308.877 kb on - strand, within CCNA_02152at 2308.887 kb on - strand, within CCNA_02152at 2308.952 kb on + strand, within CCNA_02152at 2308.977 kb on - strand, within CCNA_02152at 2309.000 kb on - strand, within CCNA_02152at 2309.000 kb on - strand, within CCNA_02152at 2309.010 kb on - strand, within CCNA_02152at 2309.010 kb on - strand, within CCNA_02152at 2309.010 kb on - strand, within CCNA_02152at 2309.011 kb on - strand, within CCNA_02152at 2309.046 kb on - strand, within CCNA_02152at 2309.051 kb on - strand, within CCNA_02152at 2309.066 kb on - strand, within CCNA_02152at 2309.086 kb on - strand, within CCNA_02152at 2309.102 kb on + strand, within CCNA_02152at 2309.133 kb on - strand, within CCNA_02152at 2309.133 kb on - strand, within CCNA_02152at 2309.163 kb on + strandat 2309.191 kb on - strandat 2309.210 kb on + strandat 2309.212 kb on + strandat 2309.220 kb on - strandat 2309.228 kb on - strandat 2309.260 kb on + strandat 2309.268 kb on - strandat 2309.285 kb on - strandat 2309.289 kb on + strandat 2309.297 kb on - strand, within CCNA_02153at 2309.315 kb on - strand, within CCNA_02153at 2309.315 kb on - strand, within CCNA_02153at 2309.323 kb on + strand, within CCNA_02153at 2309.326 kb on - strand, within CCNA_02153at 2309.356 kb on + strand, within CCNA_02153at 2309.364 kb on - strand, within CCNA_02153at 2309.422 kb on + strand, within CCNA_02153at 2309.444 kb on - strand, within CCNA_02153at 2309.535 kb on - strand, within CCNA_02153at 2309.603 kb on - strand, within CCNA_02153at 2309.610 kb on + strand, within CCNA_02153at 2309.666 kb on + strand, within CCNA_02153at 2309.666 kb on + strand, within CCNA_02153at 2309.673 kb on + strand, within CCNA_02153at 2309.673 kb on + strand, within CCNA_02153at 2309.679 kb on - strand, within CCNA_02153at 2309.681 kb on - strand, within CCNA_02153at 2309.729 kb on - strand, within CCNA_02153at 2309.734 kb on - strand, within CCNA_02153at 2309.772 kb on + strand, within CCNA_02153at 2309.788 kb on + strand, within CCNA_02153at 2309.798 kb on - strand, within CCNA_02153at 2309.867 kb on + strand, within CCNA_02153at 2309.937 kb on - strand, within CCNA_02153at 2309.960 kb on - strand, within CCNA_02153at 2309.965 kb on - strand, within CCNA_02153at 2309.970 kb on + strand, within CCNA_02153at 2309.990 kb on + strand, within CCNA_02153at 2310.002 kb on + strand, within CCNA_02153at 2310.095 kb on + strandat 2310.103 kb on - strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.131 kb on + strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.139 kb on - strandat 2310.163 kb on - strandat 2310.182 kb on + strandat 2310.205 kb on - strand, within CCNA_02154at 2310.207 kb on - strand, within CCNA_02154

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,308,187 + -0.1
2,308,245 - CCNA_02151 0.19 +1.7
2,308,265 - CCNA_02151 0.27 +1.0
2,308,280 - CCNA_02151 0.33 +2.5
2,308,342 + CCNA_02151 0.57 -2.3
2,308,345 - CCNA_02151 0.58 +2.0
2,308,345 - CCNA_02151 0.58 +2.2
2,308,345 - CCNA_02151 0.58 +1.3
2,308,357 + CCNA_02151 0.63 +0.1
2,308,385 - CCNA_02151 0.74 +1.8
2,308,421 - CCNA_02151 0.88 +1.1
2,308,448 - +2.2
2,308,472 + +0.2
2,308,478 - +1.2
2,308,485 - +0.1
2,308,507 + -1.5
2,308,515 - +0.1
2,308,668 - CCNA_02152 0.18 -0.1
2,308,772 - CCNA_02152 0.34 -1.1
2,308,788 - CCNA_02152 0.36 -3.4
2,308,788 - CCNA_02152 0.36 -1.8
2,308,877 - CCNA_02152 0.50 -0.1
2,308,887 - CCNA_02152 0.51 -1.2
2,308,952 + CCNA_02152 0.61 -0.6
2,308,977 - CCNA_02152 0.65 -1.4
2,309,000 - CCNA_02152 0.68 -1.6
2,309,000 - CCNA_02152 0.68 -2.5
2,309,010 - CCNA_02152 0.70 -0.1
2,309,010 - CCNA_02152 0.70 -0.9
2,309,010 - CCNA_02152 0.70 -0.9
2,309,011 - CCNA_02152 0.70 -0.8
2,309,046 - CCNA_02152 0.75 -0.9
2,309,051 - CCNA_02152 0.76 -0.4
2,309,066 - CCNA_02152 0.78 -0.5
2,309,086 - CCNA_02152 0.82 -1.3
2,309,102 + CCNA_02152 0.84 -2.7
2,309,133 - CCNA_02152 0.89 -0.5
2,309,133 - CCNA_02152 0.89 +0.3
2,309,163 + -2.1
2,309,191 - +1.6
2,309,210 + -2.1
2,309,212 + +2.2
2,309,220 - +1.2
2,309,228 - +1.4
2,309,260 + -0.5
2,309,268 - -0.8
2,309,285 - +1.2
2,309,289 + +0.2
2,309,297 - CCNA_02153 0.10 +0.1
2,309,315 - CCNA_02153 0.12 +0.5
2,309,315 - CCNA_02153 0.12 -1.4
2,309,323 + CCNA_02153 0.13 -2.2
2,309,326 - CCNA_02153 0.13 +0.4
2,309,356 + CCNA_02153 0.17 -1.3
2,309,364 - CCNA_02153 0.17 -0.3
2,309,422 + CCNA_02153 0.24 -1.7
2,309,444 - CCNA_02153 0.26 +1.3
2,309,535 - CCNA_02153 0.36 +0.9
2,309,603 - CCNA_02153 0.43 -0.2
2,309,610 + CCNA_02153 0.44 -0.1
2,309,666 + CCNA_02153 0.50 -2.8
2,309,666 + CCNA_02153 0.50 +0.8
2,309,673 + CCNA_02153 0.51 -1.8
2,309,673 + CCNA_02153 0.51 +0.1
2,309,679 - CCNA_02153 0.52 -1.2
2,309,681 - CCNA_02153 0.52 -0.8
2,309,729 - CCNA_02153 0.57 +1.2
2,309,734 - CCNA_02153 0.58 +0.3
2,309,772 + CCNA_02153 0.62 +0.6
2,309,788 + CCNA_02153 0.63 -1.8
2,309,798 - CCNA_02153 0.64 +0.6
2,309,867 + CCNA_02153 0.72 -0.1
2,309,937 - CCNA_02153 0.80 +0.9
2,309,960 - CCNA_02153 0.82 +0.7
2,309,965 - CCNA_02153 0.83 +1.6
2,309,970 + CCNA_02153 0.83 -0.4
2,309,990 + CCNA_02153 0.85 -1.8
2,310,002 + CCNA_02153 0.87 -1.4
2,310,095 + -1.1
2,310,103 - -1.8
2,310,131 + +0.5
2,310,131 + -0.9
2,310,131 + -0.5
2,310,131 + -2.5
2,310,131 + -2.5
2,310,131 + -0.6
2,310,131 + -0.2
2,310,131 + -2.1
2,310,131 + -0.3
2,310,131 + +0.5
2,310,131 + -1.4
2,310,131 + +0.8
2,310,131 + -1.2
2,310,139 - +0.2
2,310,139 - -0.6
2,310,139 - +0.8
2,310,139 - +0.5
2,310,139 - -0.6
2,310,139 - +0.7
2,310,139 - -0.8
2,310,139 - +0.2
2,310,139 - +0.3
2,310,139 - +1.5
2,310,139 - +2.8
2,310,139 - +0.2
2,310,139 - -0.8
2,310,139 - -0.3
2,310,139 - +1.0
2,310,139 - -0.9
2,310,139 - -0.9
2,310,139 - -1.1
2,310,139 - -0.4
2,310,139 - -0.4
2,310,139 - +0.1
2,310,139 - -0.1
2,310,139 - -1.1
2,310,163 - -0.2
2,310,182 + +0.1
2,310,205 - CCNA_02154 0.12 -0.5
2,310,207 - CCNA_02154 0.12 +2.0

Or see this region's nucleotide sequence