Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01725

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01723 and CCNA_01724 are separated by 152 nucleotidesCCNA_01724 and CCNA_01725 overlap by 4 nucleotidesCCNA_01725 and CCNA_01726 are separated by 125 nucleotides CCNA_01723: CCNA_01723 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,849,599 to 1,850,426 _01723 CCNA_01724: CCNA_01724 - hypothetical protein, at 1,850,579 to 1,851,331 _01724 CCNA_01725: CCNA_01725 - beta-barrel assembly machine (BAM) protein BamB, at 1,851,328 to 1,852,758 _01725 CCNA_01726: CCNA_01726 - EngA-subfamily GTPase protein, at 1,852,884 to 1,854,650 _01726 Position (kb) 1851 1852 1853Strain fitness (log2 ratio) -2 -1 0 1 2at 1850.421 kb on + strandat 1850.454 kb on + strandat 1850.454 kb on + strandat 1850.456 kb on + strandat 1850.462 kb on - strandat 1850.503 kb on + strandat 1850.526 kb on + strandat 1850.569 kb on + strandat 1850.623 kb on + strandat 1850.653 kb on + strandat 1850.743 kb on + strand, within CCNA_01724at 1850.812 kb on + strand, within CCNA_01724at 1850.974 kb on + strand, within CCNA_01724at 1851.244 kb on - strand, within CCNA_01724at 1851.244 kb on - strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724at 1852.863 kb on + strandat 1852.888 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,850,421 + -0.7
1,850,454 + +0.5
1,850,454 + +1.1
1,850,456 + +2.6
1,850,462 - +0.4
1,850,503 + -2.6
1,850,526 + -1.9
1,850,569 + -0.4
1,850,623 + -2.5
1,850,653 + -1.4
1,850,743 + CCNA_01724 0.22 +0.4
1,850,812 + CCNA_01724 0.31 -2.1
1,850,974 + CCNA_01724 0.52 -0.7
1,851,244 - CCNA_01724 0.88 -0.3
1,851,244 - CCNA_01724 0.88 -0.6
1,851,250 + CCNA_01724 0.89 -2.5
1,851,250 + CCNA_01724 0.89 +1.1
1,851,250 + CCNA_01724 0.89 -0.9
1,852,863 + +1.9
1,852,888 - +0.6

Or see this region's nucleotide sequence