Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01057 and CCNA_01058 are separated by 82 nucleotides CCNA_01058 and CCNA_01059 are separated by 263 nucleotides
CCNA_01057: CCNA_01057 - hypothetical protein, at 1,157,551 to 1,159,047
_01057
CCNA_01058: CCNA_01058 - helix-turn-helix transcriptional regulator, at 1,159,130 to 1,159,429
_01058
CCNA_01059: CCNA_01059 - S-layer protein rsaA, at 1,159,693 to 1,162,773
_01059
Position (kb)
1159
1160 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1158.131 kb on - strand, within CCNA_01057 at 1158.136 kb on - strand, within CCNA_01057 at 1158.162 kb on + strand, within CCNA_01057 at 1158.194 kb on + strand, within CCNA_01057 at 1158.206 kb on - strand, within CCNA_01057 at 1158.229 kb on - strand, within CCNA_01057 at 1158.229 kb on - strand, within CCNA_01057 at 1158.229 kb on - strand, within CCNA_01057 at 1158.238 kb on - strand, within CCNA_01057 at 1158.268 kb on - strand, within CCNA_01057 at 1158.385 kb on + strand, within CCNA_01057 at 1158.393 kb on - strand, within CCNA_01057 at 1158.513 kb on + strand, within CCNA_01057 at 1158.521 kb on - strand, within CCNA_01057 at 1158.568 kb on + strand, within CCNA_01057 at 1158.581 kb on - strand, within CCNA_01057 at 1158.604 kb on + strand, within CCNA_01057 at 1158.612 kb on - strand, within CCNA_01057 at 1158.612 kb on - strand, within CCNA_01057 at 1158.612 kb on - strand, within CCNA_01057 at 1158.646 kb on - strand, within CCNA_01057 at 1158.646 kb on - strand, within CCNA_01057 at 1158.661 kb on - strand, within CCNA_01057 at 1158.673 kb on - strand, within CCNA_01057 at 1158.673 kb on - strand, within CCNA_01057 at 1158.743 kb on + strand, within CCNA_01057 at 1158.765 kb on + strand, within CCNA_01057 at 1158.773 kb on - strand, within CCNA_01057 at 1158.773 kb on - strand, within CCNA_01057 at 1158.786 kb on + strand, within CCNA_01057 at 1158.889 kb on - strand, within CCNA_01057 at 1158.911 kb on + strand at 1158.977 kb on - strand at 1159.036 kb on - strand at 1159.059 kb on - strand at 1159.069 kb on - strand at 1159.070 kb on - strand at 1159.218 kb on - strand, within CCNA_01058 at 1159.219 kb on - strand, within CCNA_01058 at 1159.264 kb on - strand, within CCNA_01058 at 1159.342 kb on - strand, within CCNA_01058 at 1159.393 kb on - strand, within CCNA_01058 at 1159.429 kb on + strand at 1159.437 kb on - strand at 1159.437 kb on - strand at 1159.462 kb on - strand at 1159.490 kb on + strand at 1159.514 kb on - strand at 1159.525 kb on + strand at 1159.535 kb on - strand at 1159.616 kb on + strand at 1159.653 kb on + strand at 1159.713 kb on + strand at 1159.713 kb on + strand at 1159.713 kb on + strand at 1159.713 kb on + strand at 1159.723 kb on + strand at 1159.723 kb on + strand at 1159.723 kb on + strand at 1159.733 kb on + strand at 1159.740 kb on + strand at 1159.823 kb on + strand at 1159.833 kb on + strand at 1159.841 kb on + strand at 1159.841 kb on + strand at 1159.841 kb on + strand at 1159.841 kb on + strand at 1159.867 kb on + strand at 1160.235 kb on + strand, within CCNA_01059 at 1160.280 kb on + strand, within CCNA_01059 at 1160.280 kb on + strand, within CCNA_01059 at 1160.421 kb on + strand, within CCNA_01059
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,158,131 - CCNA_01057 0.39 +1.6 1,158,136 - CCNA_01057 0.39 +1.8 1,158,162 + CCNA_01057 0.41 -0.5 1,158,194 + CCNA_01057 0.43 -0.6 1,158,206 - CCNA_01057 0.44 +0.9 1,158,229 - CCNA_01057 0.45 +0.5 1,158,229 - CCNA_01057 0.45 +0.7 1,158,229 - CCNA_01057 0.45 +1.6 1,158,238 - CCNA_01057 0.46 +1.8 1,158,268 - CCNA_01057 0.48 +2.0 1,158,385 + CCNA_01057 0.56 -0.9 1,158,393 - CCNA_01057 0.56 +1.9 1,158,513 + CCNA_01057 0.64 -1.4 1,158,521 - CCNA_01057 0.65 +1.6 1,158,568 + CCNA_01057 0.68 -1.8 1,158,581 - CCNA_01057 0.69 +1.8 1,158,604 + CCNA_01057 0.70 -0.5 1,158,612 - CCNA_01057 0.71 +2.0 1,158,612 - CCNA_01057 0.71 +1.1 1,158,612 - CCNA_01057 0.71 +2.2 1,158,646 - CCNA_01057 0.73 +1.2 1,158,646 - CCNA_01057 0.73 +0.7 1,158,661 - CCNA_01057 0.74 +1.8 1,158,673 - CCNA_01057 0.75 +1.0 1,158,673 - CCNA_01057 0.75 +1.4 1,158,743 + CCNA_01057 0.80 -0.5 1,158,765 + CCNA_01057 0.81 -1.4 1,158,773 - CCNA_01057 0.82 +2.2 1,158,773 - CCNA_01057 0.82 +2.3 1,158,786 + CCNA_01057 0.82 -1.9 1,158,889 - CCNA_01057 0.89 -0.6 1,158,911 + -0.3 1,158,977 - +0.2 1,159,036 - +0.3 1,159,059 - +0.9 1,159,069 - +1.9 1,159,070 - +2.0 1,159,218 - CCNA_01058 0.29 +1.0 1,159,219 - CCNA_01058 0.30 +1.8 1,159,264 - CCNA_01058 0.45 +1.6 1,159,342 - CCNA_01058 0.71 +1.4 1,159,393 - CCNA_01058 0.88 +1.3 1,159,429 + -2.2 1,159,437 - -0.9 1,159,437 - +1.5 1,159,462 - +1.2 1,159,490 + -0.5 1,159,514 - +1.9 1,159,525 + +0.4 1,159,535 - -0.9 1,159,616 + +2.2 1,159,653 + +1.9 1,159,713 + +1.9 1,159,713 + +1.9 1,159,713 + +1.7 1,159,713 + +1.7 1,159,723 + +2.0 1,159,723 + +2.1 1,159,723 + +1.2 1,159,733 + +1.9 1,159,740 + +2.1 1,159,823 + +2.3 1,159,833 + +2.0 1,159,841 + +1.9 1,159,841 + +1.9 1,159,841 + +2.3 1,159,841 + +1.8 1,159,867 + +2.1 1,160,235 + CCNA_01059 0.18 +2.3 1,160,280 + CCNA_01059 0.19 +2.0 1,160,280 + CCNA_01059 0.19 +1.7 1,160,421 + CCNA_01059 0.24 +2.1
Or see this region's nucleotide sequence