Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00788 and CCNA_00789 are separated by 2 nucleotides CCNA_00789 and CCNA_00790 are separated by 175 nucleotides CCNA_00790 and CCNA_03939 are separated by 318 nucleotides CCNA_03939 and CCNA_00792 are separated by 340 nucleotides
CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870
_00788
CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523
_00789
CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076
_00790
CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685
_03939
CCNA_00792: CCNA_00792 - glycosyltransferase, at 855,026 to 856,210
_00792
Position (kb) 853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 852.709 kb on - strand, within CCNA_00788 at 852.719 kb on + strand, within CCNA_00788 at 852.765 kb on + strand at 852.765 kb on + strand at 852.773 kb on - strand at 852.800 kb on - strand at 852.802 kb on + strand at 852.838 kb on + strand at 852.838 kb on + strand at 852.838 kb on + strand at 852.846 kb on - strand at 852.856 kb on - strand at 852.863 kb on + strand at 852.870 kb on + strand at 852.911 kb on + strand at 852.914 kb on - strand at 852.939 kb on + strand, within CCNA_00789 at 852.946 kb on + strand, within CCNA_00789 at 852.947 kb on - strand, within CCNA_00789 at 852.995 kb on + strand, within CCNA_00789 at 853.077 kb on + strand, within CCNA_00789 at 853.084 kb on + strand, within CCNA_00789 at 853.095 kb on + strand, within CCNA_00789 at 853.095 kb on + strand, within CCNA_00789 at 853.103 kb on - strand, within CCNA_00789 at 853.103 kb on - strand, within CCNA_00789 at 853.114 kb on + strand, within CCNA_00789 at 853.186 kb on + strand, within CCNA_00789 at 853.261 kb on + strand, within CCNA_00789 at 853.269 kb on - strand, within CCNA_00789 at 853.357 kb on - strand, within CCNA_00789 at 853.414 kb on - strand, within CCNA_00789 at 853.461 kb on + strand at 853.497 kb on - strand at 853.528 kb on - strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.595 kb on + strand at 853.598 kb on - strand at 853.598 kb on - strand at 853.627 kb on - strand at 853.632 kb on + strand at 853.634 kb on + strand at 853.642 kb on - strand at 853.717 kb on - strand at 853.764 kb on + strand, within CCNA_00790 at 853.772 kb on - strand, within CCNA_00790 at 853.809 kb on + strand, within CCNA_00790 at 853.811 kb on + strand, within CCNA_00790 at 853.811 kb on + strand, within CCNA_00790 at 853.811 kb on + strand, within CCNA_00790 at 853.819 kb on - strand, within CCNA_00790 at 853.819 kb on - strand, within CCNA_00790 at 853.844 kb on + strand, within CCNA_00790 at 853.854 kb on - strand, within CCNA_00790 at 853.864 kb on - strand, within CCNA_00790 at 853.937 kb on + strand, within CCNA_00790 at 853.941 kb on + strand, within CCNA_00790 at 853.981 kb on - strand, within CCNA_00790 at 853.988 kb on + strand, within CCNA_00790 at 853.988 kb on + strand, within CCNA_00790 at 853.988 kb on + strand, within CCNA_00790 at 854.076 kb on + strand at 854.078 kb on + strand at 854.118 kb on - strand at 854.130 kb on - strand at 854.130 kb on - strand at 854.138 kb on + strand at 854.146 kb on - strand at 854.153 kb on + strand at 854.173 kb on - strand at 854.187 kb on + strand at 854.226 kb on + strand at 854.255 kb on - strand at 854.272 kb on + strand at 854.272 kb on + strand at 854.275 kb on - strand at 854.322 kb on - strand at 854.326 kb on + strand at 854.349 kb on + strand at 854.352 kb on - strand at 854.357 kb on - strand at 854.357 kb on - strand at 854.357 kb on - strand at 854.370 kb on - strand at 854.375 kb on + strand at 854.383 kb on - strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.427 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.447 kb on - strand, within CCNA_03939 at 854.498 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.524 kb on - strand, within CCNA_03939 at 854.539 kb on - strand, within CCNA_03939 at 854.540 kb on + strand, within CCNA_03939 at 854.546 kb on + strand, within CCNA_03939 at 854.563 kb on - strand, within CCNA_03939 at 854.587 kb on - strand, within CCNA_03939 at 854.596 kb on + strand, within CCNA_03939 at 854.681 kb on + strand at 854.686 kb on + strand at 854.701 kb on + strand at 854.709 kb on - strand at 854.709 kb on - strand at 854.709 kb on - strand at 854.739 kb on + strand at 854.749 kb on - strand at 854.752 kb on + strand at 854.752 kb on - strand at 854.762 kb on + strand at 854.768 kb on + strand at 854.776 kb on - strand at 854.776 kb on - strand at 854.820 kb on + strand at 854.820 kb on - strand at 854.828 kb on - strand at 854.828 kb on - strand at 854.900 kb on - strand at 854.947 kb on - strand at 854.948 kb on + strand at 854.948 kb on + strand at 854.958 kb on + strand at 854.984 kb on + strand at 855.033 kb on - strand at 855.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 852,709 - CCNA_00788 0.88 -0.8 852,719 + CCNA_00788 0.88 -0.4 852,765 + -1.5 852,765 + -0.2 852,773 - +0.6 852,800 - +1.7 852,802 + -1.8 852,838 + -1.6 852,838 + -0.0 852,838 + -0.1 852,846 - -0.7 852,856 - -0.6 852,863 + -2.4 852,870 + -0.6 852,911 + -1.7 852,914 - -2.2 852,939 + CCNA_00789 0.10 -1.4 852,946 + CCNA_00789 0.11 -1.2 852,947 - CCNA_00789 0.11 -0.6 852,995 + CCNA_00789 0.19 -0.8 853,077 + CCNA_00789 0.31 -2.3 853,084 + CCNA_00789 0.32 -2.7 853,095 + CCNA_00789 0.34 -2.9 853,095 + CCNA_00789 0.34 +0.2 853,103 - CCNA_00789 0.35 -2.9 853,103 - CCNA_00789 0.35 -2.3 853,114 + CCNA_00789 0.37 -1.5 853,186 + CCNA_00789 0.48 -1.7 853,261 + CCNA_00789 0.60 -0.9 853,269 - CCNA_00789 0.61 -0.7 853,357 - CCNA_00789 0.74 -2.0 853,414 - CCNA_00789 0.83 -3.1 853,461 + -1.9 853,497 - +1.1 853,528 - -0.0 853,590 + -2.8 853,590 + -0.6 853,590 + -3.0 853,595 + -1.6 853,598 - -1.4 853,598 - -3.5 853,627 - -0.0 853,632 + -0.1 853,634 + -0.5 853,642 - +0.7 853,717 - +0.1 853,764 + CCNA_00790 0.17 +0.2 853,772 - CCNA_00790 0.19 -0.0 853,809 + CCNA_00790 0.29 +0.2 853,811 + CCNA_00790 0.30 +0.6 853,811 + CCNA_00790 0.30 +0.9 853,811 + CCNA_00790 0.30 +1.1 853,819 - CCNA_00790 0.32 -0.0 853,819 - CCNA_00790 0.32 -1.7 853,844 + CCNA_00790 0.38 +1.9 853,854 - CCNA_00790 0.41 -1.4 853,864 - CCNA_00790 0.44 -1.2 853,937 + CCNA_00790 0.63 +0.1 853,941 + CCNA_00790 0.64 +1.4 853,981 - CCNA_00790 0.75 +0.4 853,988 + CCNA_00790 0.76 +1.3 853,988 + CCNA_00790 0.76 +0.8 853,988 + CCNA_00790 0.76 -1.1 854,076 + -1.7 854,078 + -0.8 854,118 - -0.2 854,130 - -1.9 854,130 - +1.7 854,138 + -0.2 854,146 - -0.1 854,153 + -2.4 854,173 - -0.9 854,187 + +0.6 854,226 + +0.1 854,255 - -0.9 854,272 + +0.1 854,272 + +1.2 854,275 - -0.2 854,322 - +0.4 854,326 + -2.5 854,349 + -0.2 854,352 - -1.0 854,357 - -2.4 854,357 - -0.6 854,357 - -2.1 854,370 - -1.4 854,375 + -1.4 854,383 - +1.0 854,405 + +0.4 854,405 + +0.6 854,413 - +1.0 854,413 - +0.1 854,413 - -0.6 854,413 - -0.0 854,413 - -1.6 854,413 - +1.8 854,427 - CCNA_03939 0.11 -3.7 854,437 - CCNA_03939 0.14 -1.2 854,437 - CCNA_03939 0.14 -1.7 854,437 - CCNA_03939 0.14 -1.4 854,437 - CCNA_03939 0.14 -0.9 854,447 - CCNA_03939 0.18 +0.6 854,498 + CCNA_03939 0.35 -0.5 854,499 + CCNA_03939 0.36 -1.3 854,524 - CCNA_03939 0.44 -1.2 854,539 - CCNA_03939 0.49 +0.1 854,540 + CCNA_03939 0.50 +2.1 854,546 + CCNA_03939 0.52 -0.6 854,563 - CCNA_03939 0.58 -1.6 854,587 - CCNA_03939 0.66 -1.2 854,596 + CCNA_03939 0.69 -0.3 854,681 + +0.5 854,686 + -0.6 854,701 + +0.4 854,709 - -0.4 854,709 - -1.6 854,709 - +0.0 854,739 + +0.8 854,749 - -2.2 854,752 + +0.1 854,752 - +0.4 854,762 + -0.4 854,768 + +0.1 854,776 - -0.9 854,776 - -0.5 854,820 + +0.6 854,820 - -0.6 854,828 - -0.8 854,828 - -0.7 854,900 - -1.9 854,947 - +0.4 854,948 + -1.2 854,948 + -0.4 854,958 + -0.8 854,984 + +1.1 855,033 - -0.3 855,059 + -0.6
Or see this region's nucleotide sequence