Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00515

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00514 and CCNA_00515 are separated by 415 nucleotidesCCNA_00515 and CCNA_00516 are separated by 25 nucleotidesCCNA_00516 and CCNA_00517 are separated by 2 nucleotides CCNA_00514: CCNA_00514 - pirin, at 528,078 to 528,908 _00514 CCNA_00515: CCNA_00515 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 529,324 to 531,657 _00515 CCNA_00516: CCNA_00516 - integral membrane protein, at 531,683 to 532,432 _00516 CCNA_00517: CCNA_00517 - peptidyl-tRNA hydrolase, at 532,435 to 533,052 _00517 Position (kb) 529 530 531 532Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 528.330 kb on + strand, within CCNA_00514at 528.337 kb on - strand, within CCNA_00514at 528.338 kb on - strand, within CCNA_00514at 528.369 kb on + strand, within CCNA_00514at 528.405 kb on + strand, within CCNA_00514at 528.405 kb on + strand, within CCNA_00514at 528.413 kb on - strand, within CCNA_00514at 528.424 kb on + strand, within CCNA_00514at 528.424 kb on + strand, within CCNA_00514at 528.432 kb on - strand, within CCNA_00514at 528.432 kb on - strand, within CCNA_00514at 528.436 kb on + strand, within CCNA_00514at 528.436 kb on + strand, within CCNA_00514at 528.621 kb on + strand, within CCNA_00514at 528.645 kb on - strand, within CCNA_00514at 528.645 kb on - strand, within CCNA_00514at 528.662 kb on + strand, within CCNA_00514at 528.690 kb on + strand, within CCNA_00514at 528.690 kb on + strand, within CCNA_00514at 528.698 kb on - strand, within CCNA_00514at 528.713 kb on - strand, within CCNA_00514at 528.757 kb on - strand, within CCNA_00514at 528.777 kb on + strand, within CCNA_00514at 528.802 kb on - strand, within CCNA_00514at 528.832 kb on + strandat 528.856 kb on + strandat 528.864 kb on + strandat 528.864 kb on - strandat 528.878 kb on - strandat 528.902 kb on + strandat 528.910 kb on - strandat 528.915 kb on - strandat 528.972 kb on + strandat 529.040 kb on - strandat 529.074 kb on - strandat 529.127 kb on + strandat 529.147 kb on + strandat 529.147 kb on + strandat 529.152 kb on + strandat 529.155 kb on - strandat 529.155 kb on - strandat 529.155 kb on - strandat 529.160 kb on - strandat 529.189 kb on - strandat 529.264 kb on + strandat 529.371 kb on - strandat 529.398 kb on + strandat 529.405 kb on + strandat 529.423 kb on + strandat 529.429 kb on - strandat 529.439 kb on - strandat 529.449 kb on - strandat 529.450 kb on - strandat 529.527 kb on - strandat 529.539 kb on - strandat 529.544 kb on - strandat 529.570 kb on + strand, within CCNA_00515at 529.570 kb on + strand, within CCNA_00515at 529.570 kb on + strand, within CCNA_00515at 529.570 kb on + strand, within CCNA_00515at 529.578 kb on - strand, within CCNA_00515at 529.630 kb on + strand, within CCNA_00515at 529.638 kb on - strand, within CCNA_00515at 529.638 kb on - strand, within CCNA_00515at 529.660 kb on + strand, within CCNA_00515at 529.674 kb on - strand, within CCNA_00515at 529.810 kb on + strand, within CCNA_00515at 529.849 kb on - strand, within CCNA_00515at 529.869 kb on + strand, within CCNA_00515at 529.878 kb on + strand, within CCNA_00515at 529.878 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.886 kb on - strand, within CCNA_00515at 529.892 kb on - strand, within CCNA_00515at 529.892 kb on - strand, within CCNA_00515at 529.898 kb on - strand, within CCNA_00515at 530.014 kb on + strand, within CCNA_00515at 530.021 kb on - strand, within CCNA_00515at 530.038 kb on + strand, within CCNA_00515at 530.054 kb on + strand, within CCNA_00515at 530.056 kb on - strand, within CCNA_00515at 530.059 kb on + strand, within CCNA_00515at 530.059 kb on + strand, within CCNA_00515at 530.067 kb on - strand, within CCNA_00515at 530.067 kb on - strand, within CCNA_00515at 530.067 kb on - strand, within CCNA_00515at 530.067 kb on - strand, within CCNA_00515at 530.067 kb on - strand, within CCNA_00515at 530.067 kb on - strand, within CCNA_00515at 530.067 kb on - strand, within CCNA_00515at 530.147 kb on - strand, within CCNA_00515at 530.159 kb on + strand, within CCNA_00515at 530.165 kb on + strand, within CCNA_00515at 530.165 kb on + strand, within CCNA_00515at 530.165 kb on + strand, within CCNA_00515at 530.167 kb on - strand, within CCNA_00515at 530.170 kb on + strand, within CCNA_00515at 530.173 kb on - strand, within CCNA_00515at 530.173 kb on - strand, within CCNA_00515at 530.175 kb on + strand, within CCNA_00515at 530.241 kb on + strand, within CCNA_00515at 530.296 kb on + strand, within CCNA_00515at 530.298 kb on + strand, within CCNA_00515at 530.298 kb on + strand, within CCNA_00515at 530.377 kb on + strand, within CCNA_00515at 530.378 kb on + strand, within CCNA_00515at 530.434 kb on + strand, within CCNA_00515at 530.442 kb on + strand, within CCNA_00515at 530.442 kb on - strand, within CCNA_00515at 530.480 kb on - strand, within CCNA_00515at 530.588 kb on - strand, within CCNA_00515at 530.629 kb on - strand, within CCNA_00515at 530.652 kb on - strand, within CCNA_00515at 530.661 kb on + strand, within CCNA_00515at 530.681 kb on - strand, within CCNA_00515at 530.742 kb on + strand, within CCNA_00515at 530.743 kb on + strand, within CCNA_00515at 530.748 kb on + strand, within CCNA_00515at 530.748 kb on + strand, within CCNA_00515at 530.751 kb on - strand, within CCNA_00515at 530.808 kb on + strand, within CCNA_00515at 530.810 kb on - strand, within CCNA_00515at 530.822 kb on + strand, within CCNA_00515at 530.822 kb on + strand, within CCNA_00515at 530.866 kb on + strand, within CCNA_00515at 530.866 kb on + strand, within CCNA_00515at 530.874 kb on - strand, within CCNA_00515at 530.874 kb on - strand, within CCNA_00515at 530.874 kb on - strand, within CCNA_00515at 530.874 kb on - strand, within CCNA_00515at 530.879 kb on - strand, within CCNA_00515at 530.900 kb on + strand, within CCNA_00515at 530.915 kb on + strand, within CCNA_00515at 530.923 kb on - strand, within CCNA_00515at 530.925 kb on + strand, within CCNA_00515at 530.933 kb on - strand, within CCNA_00515at 530.933 kb on - strand, within CCNA_00515at 530.933 kb on - strand, within CCNA_00515at 530.940 kb on - strand, within CCNA_00515at 530.969 kb on - strand, within CCNA_00515at 531.011 kb on + strand, within CCNA_00515at 531.018 kb on + strand, within CCNA_00515at 531.019 kb on - strand, within CCNA_00515at 531.027 kb on - strand, within CCNA_00515at 531.036 kb on + strand, within CCNA_00515at 531.067 kb on + strand, within CCNA_00515at 531.067 kb on + strand, within CCNA_00515at 531.067 kb on + strand, within CCNA_00515at 531.067 kb on + strand, within CCNA_00515at 531.127 kb on + strand, within CCNA_00515at 531.135 kb on - strand, within CCNA_00515at 531.234 kb on + strand, within CCNA_00515at 531.244 kb on + strand, within CCNA_00515at 531.252 kb on - strand, within CCNA_00515at 531.252 kb on - strand, within CCNA_00515at 531.252 kb on - strand, within CCNA_00515at 531.252 kb on - strand, within CCNA_00515at 531.252 kb on - strand, within CCNA_00515at 531.252 kb on - strand, within CCNA_00515at 531.256 kb on + strand, within CCNA_00515at 531.259 kb on + strand, within CCNA_00515at 531.304 kb on - strand, within CCNA_00515at 531.316 kb on + strand, within CCNA_00515at 531.403 kb on + strand, within CCNA_00515at 531.407 kb on - strand, within CCNA_00515at 531.442 kb on - strandat 531.445 kb on + strandat 531.445 kb on + strandat 531.453 kb on - strandat 531.462 kb on - strandat 531.463 kb on - strandat 531.471 kb on + strandat 531.512 kb on - strandat 531.514 kb on - strandat 531.552 kb on + strandat 531.552 kb on + strandat 531.552 kb on + strandat 531.552 kb on + strandat 531.560 kb on - strandat 531.563 kb on + strandat 531.582 kb on - strandat 531.584 kb on + strandat 531.660 kb on - strandat 531.682 kb on + strandat 531.717 kb on + strandat 531.725 kb on - strandat 531.746 kb on + strandat 531.746 kb on + strandat 531.747 kb on + strandat 531.755 kb on - strandat 531.755 kb on - strandat 531.755 kb on - strandat 531.825 kb on + strand, within CCNA_00516at 531.825 kb on + strand, within CCNA_00516at 531.833 kb on + strand, within CCNA_00516at 531.850 kb on - strand, within CCNA_00516at 531.870 kb on - strand, within CCNA_00516at 531.872 kb on + strand, within CCNA_00516at 531.872 kb on + strand, within CCNA_00516at 531.872 kb on + strand, within CCNA_00516at 531.880 kb on - strand, within CCNA_00516at 531.880 kb on - strand, within CCNA_00516at 531.880 kb on - strand, within CCNA_00516at 531.880 kb on - strand, within CCNA_00516at 531.882 kb on + strand, within CCNA_00516at 531.887 kb on + strand, within CCNA_00516at 531.890 kb on - strand, within CCNA_00516at 531.890 kb on - strand, within CCNA_00516at 531.895 kb on - strand, within CCNA_00516at 531.907 kb on + strand, within CCNA_00516at 531.915 kb on - strand, within CCNA_00516at 531.915 kb on - strand, within CCNA_00516at 531.915 kb on - strand, within CCNA_00516at 531.939 kb on + strand, within CCNA_00516at 531.939 kb on + strand, within CCNA_00516at 531.947 kb on - strand, within CCNA_00516at 531.947 kb on - strand, within CCNA_00516at 531.960 kb on + strand, within CCNA_00516at 531.967 kb on - strand, within CCNA_00516at 532.014 kb on + strand, within CCNA_00516at 532.019 kb on + strand, within CCNA_00516at 532.024 kb on + strand, within CCNA_00516at 532.037 kb on + strand, within CCNA_00516at 532.070 kb on - strand, within CCNA_00516at 532.070 kb on - strand, within CCNA_00516at 532.087 kb on - strand, within CCNA_00516at 532.109 kb on - strand, within CCNA_00516at 532.113 kb on - strand, within CCNA_00516at 532.177 kb on - strand, within CCNA_00516at 532.249 kb on - strand, within CCNA_00516at 532.266 kb on + strand, within CCNA_00516at 532.272 kb on + strand, within CCNA_00516at 532.275 kb on - strand, within CCNA_00516at 532.284 kb on - strand, within CCNA_00516at 532.298 kb on - strand, within CCNA_00516at 532.334 kb on + strand, within CCNA_00516at 532.337 kb on - strand, within CCNA_00516at 532.355 kb on + strand, within CCNA_00516at 532.355 kb on + strand, within CCNA_00516at 532.355 kb on + strand, within CCNA_00516at 532.363 kb on - strandat 532.383 kb on + strandat 532.403 kb on + strandat 532.461 kb on + strandat 532.461 kb on + strandat 532.461 kb on + strandat 532.474 kb on - strandat 532.501 kb on - strand, within CCNA_00517at 532.501 kb on - strand, within CCNA_00517at 532.501 kb on - strand, within CCNA_00517

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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528,330 + CCNA_00514 0.30 +0.0
528,337 - CCNA_00514 0.31 -0.1
528,338 - CCNA_00514 0.31 -1.1
528,369 + CCNA_00514 0.35 +1.7
528,405 + CCNA_00514 0.39 +1.6
528,405 + CCNA_00514 0.39 +1.3
528,413 - CCNA_00514 0.40 -0.5
528,424 + CCNA_00514 0.42 +0.7
528,424 + CCNA_00514 0.42 +1.6
528,432 - CCNA_00514 0.43 +0.8
528,432 - CCNA_00514 0.43 -0.4
528,436 + CCNA_00514 0.43 +0.6
528,436 + CCNA_00514 0.43 -1.5
528,621 + CCNA_00514 0.65 +0.7
528,645 - CCNA_00514 0.68 -0.6
528,645 - CCNA_00514 0.68 -0.8
528,662 + CCNA_00514 0.70 +0.2
528,690 + CCNA_00514 0.74 -0.1
528,690 + CCNA_00514 0.74 +2.2
528,698 - CCNA_00514 0.75 +1.8
528,713 - CCNA_00514 0.76 +0.4
528,757 - CCNA_00514 0.82 -0.4
528,777 + CCNA_00514 0.84 +1.4
528,802 - CCNA_00514 0.87 +0.2
528,832 + +0.8
528,856 + +2.5
528,864 + -1.4
528,864 - -0.9
528,878 - +0.3
528,902 + +1.6
528,910 - -0.0
528,915 - +1.7
528,972 + -3.3
529,040 - -2.1
529,074 - -0.4
529,127 + -1.0
529,147 + -3.1
529,147 + -2.6
529,152 + -0.5
529,155 - -2.9
529,155 - -0.4
529,155 - -1.9
529,160 - -1.2
529,189 - -1.9
529,264 + -0.6
529,371 - -3.0
529,398 + -3.7
529,405 + -4.1
529,423 + -2.5
529,429 - -1.3
529,439 - -1.0
529,449 - -1.8
529,450 - -1.4
529,527 - -1.8
529,539 - -1.6
529,544 - -3.0
529,570 + CCNA_00515 0.11 -2.2
529,570 + CCNA_00515 0.11 -2.4
529,570 + CCNA_00515 0.11 -1.4
529,570 + CCNA_00515 0.11 -3.4
529,578 - CCNA_00515 0.11 -2.6
529,630 + CCNA_00515 0.13 -3.1
529,638 - CCNA_00515 0.13 -1.5
529,638 - CCNA_00515 0.13 -0.0
529,660 + CCNA_00515 0.14 -0.3
529,674 - CCNA_00515 0.15 -0.8
529,810 + CCNA_00515 0.21 -1.2
529,849 - CCNA_00515 0.22 -3.8
529,869 + CCNA_00515 0.23 -3.6
529,878 + CCNA_00515 0.24 -0.6
529,878 + CCNA_00515 0.24 -2.7
529,884 + CCNA_00515 0.24 -2.3
529,884 + CCNA_00515 0.24 -1.1
529,884 + CCNA_00515 0.24 -2.7
529,884 + CCNA_00515 0.24 -2.9
529,886 - CCNA_00515 0.24 -1.8
529,892 - CCNA_00515 0.24 -0.0
529,892 - CCNA_00515 0.24 -1.5
529,898 - CCNA_00515 0.25 -1.5
530,014 + CCNA_00515 0.30 -3.2
530,021 - CCNA_00515 0.30 -1.6
530,038 + CCNA_00515 0.31 -2.3
530,054 + CCNA_00515 0.31 -1.6
530,056 - CCNA_00515 0.31 -0.3
530,059 + CCNA_00515 0.31 -1.5
530,059 + CCNA_00515 0.31 -1.3
530,067 - CCNA_00515 0.32 -2.6
530,067 - CCNA_00515 0.32 -1.5
530,067 - CCNA_00515 0.32 -0.7
530,067 - CCNA_00515 0.32 -2.2
530,067 - CCNA_00515 0.32 -1.3
530,067 - CCNA_00515 0.32 -0.2
530,067 - CCNA_00515 0.32 -2.2
530,147 - CCNA_00515 0.35 -1.9
530,159 + CCNA_00515 0.36 -2.9
530,165 + CCNA_00515 0.36 -2.0
530,165 + CCNA_00515 0.36 -3.5
530,165 + CCNA_00515 0.36 -3.4
530,167 - CCNA_00515 0.36 -2.3
530,170 + CCNA_00515 0.36 -1.8
530,173 - CCNA_00515 0.36 -1.0
530,173 - CCNA_00515 0.36 -1.9
530,175 + CCNA_00515 0.36 -3.2
530,241 + CCNA_00515 0.39 +0.1
530,296 + CCNA_00515 0.42 -3.9
530,298 + CCNA_00515 0.42 -2.6
530,298 + CCNA_00515 0.42 +1.5
530,377 + CCNA_00515 0.45 -3.3
530,378 + CCNA_00515 0.45 -2.0
530,434 + CCNA_00515 0.48 -2.7
530,442 + CCNA_00515 0.48 -2.6
530,442 - CCNA_00515 0.48 -1.6
530,480 - CCNA_00515 0.50 -2.0
530,588 - CCNA_00515 0.54 -1.3
530,629 - CCNA_00515 0.56 -1.0
530,652 - CCNA_00515 0.57 -1.2
530,661 + CCNA_00515 0.57 -2.5
530,681 - CCNA_00515 0.58 -2.7
530,742 + CCNA_00515 0.61 -3.9
530,743 + CCNA_00515 0.61 -1.9
530,748 + CCNA_00515 0.61 -1.2
530,748 + CCNA_00515 0.61 -1.9
530,751 - CCNA_00515 0.61 -2.7
530,808 + CCNA_00515 0.64 -1.3
530,810 - CCNA_00515 0.64 -0.9
530,822 + CCNA_00515 0.64 -1.7
530,822 + CCNA_00515 0.64 -3.2
530,866 + CCNA_00515 0.66 -1.8
530,866 + CCNA_00515 0.66 -3.2
530,874 - CCNA_00515 0.66 -2.0
530,874 - CCNA_00515 0.66 -2.0
530,874 - CCNA_00515 0.66 -3.1
530,874 - CCNA_00515 0.66 -0.0
530,879 - CCNA_00515 0.67 +0.5
530,900 + CCNA_00515 0.68 -1.0
530,915 + CCNA_00515 0.68 -2.8
530,923 - CCNA_00515 0.69 -1.4
530,925 + CCNA_00515 0.69 -2.8
530,933 - CCNA_00515 0.69 -2.2
530,933 - CCNA_00515 0.69 +0.1
530,933 - CCNA_00515 0.69 -0.5
530,940 - CCNA_00515 0.69 -3.0
530,969 - CCNA_00515 0.70 -0.7
531,011 + CCNA_00515 0.72 +0.1
531,018 + CCNA_00515 0.73 -2.7
531,019 - CCNA_00515 0.73 -0.0
531,027 - CCNA_00515 0.73 -1.0
531,036 + CCNA_00515 0.73 -1.5
531,067 + CCNA_00515 0.75 -2.6
531,067 + CCNA_00515 0.75 -4.4
531,067 + CCNA_00515 0.75 -4.7
531,067 + CCNA_00515 0.75 -2.9
531,127 + CCNA_00515 0.77 -0.9
531,135 - CCNA_00515 0.78 -1.0
531,234 + CCNA_00515 0.82 -1.5
531,244 + CCNA_00515 0.82 -0.0
531,252 - CCNA_00515 0.83 +0.5
531,252 - CCNA_00515 0.83 -1.7
531,252 - CCNA_00515 0.83 +0.1
531,252 - CCNA_00515 0.83 -3.2
531,252 - CCNA_00515 0.83 -0.7
531,252 - CCNA_00515 0.83 -1.4
531,256 + CCNA_00515 0.83 -2.3
531,259 + CCNA_00515 0.83 -2.7
531,304 - CCNA_00515 0.85 -2.6
531,316 + CCNA_00515 0.85 -2.4
531,403 + CCNA_00515 0.89 -3.7
531,407 - CCNA_00515 0.89 -2.0
531,442 - -1.7
531,445 + -3.9
531,445 + -2.1
531,453 - -1.4
531,462 - -2.7
531,463 - -3.1
531,471 + -2.5
531,512 - -1.6
531,514 - -1.5
531,552 + -1.1
531,552 + +0.5
531,552 + +1.1
531,552 + -2.3
531,560 - -1.9
531,563 + -2.2
531,582 - -1.9
531,584 + -1.7
531,660 - +0.8
531,682 + +0.2
531,717 + +0.1
531,725 - -0.2
531,746 + -0.3
531,746 + -1.9
531,747 + +0.5
531,755 - -0.9
531,755 - -0.8
531,755 - +0.8
531,825 + CCNA_00516 0.19 +0.5
531,825 + CCNA_00516 0.19 -0.7
531,833 + CCNA_00516 0.20 -0.6
531,850 - CCNA_00516 0.22 -0.1
531,870 - CCNA_00516 0.25 +1.3
531,872 + CCNA_00516 0.25 -1.0
531,872 + CCNA_00516 0.25 -0.5
531,872 + CCNA_00516 0.25 +2.1
531,880 - CCNA_00516 0.26 +0.6
531,880 - CCNA_00516 0.26 +1.3
531,880 - CCNA_00516 0.26 +0.2
531,880 - CCNA_00516 0.26 +0.4
531,882 + CCNA_00516 0.27 -0.7
531,887 + CCNA_00516 0.27 +1.5
531,890 - CCNA_00516 0.28 +0.3
531,890 - CCNA_00516 0.28 +0.7
531,895 - CCNA_00516 0.28 +1.0
531,907 + CCNA_00516 0.30 -0.2
531,915 - CCNA_00516 0.31 +0.9
531,915 - CCNA_00516 0.31 +1.4
531,915 - CCNA_00516 0.31 +2.1
531,939 + CCNA_00516 0.34 +0.2
531,939 + CCNA_00516 0.34 -0.9
531,947 - CCNA_00516 0.35 +0.9
531,947 - CCNA_00516 0.35 +0.6
531,960 + CCNA_00516 0.37 -0.3
531,967 - CCNA_00516 0.38 +0.4
532,014 + CCNA_00516 0.44 +0.4
532,019 + CCNA_00516 0.45 -0.1
532,024 + CCNA_00516 0.45 +0.3
532,037 + CCNA_00516 0.47 -0.0
532,070 - CCNA_00516 0.52 -3.0
532,070 - CCNA_00516 0.52 -0.4
532,087 - CCNA_00516 0.54 +0.3
532,109 - CCNA_00516 0.57 +1.1
532,113 - CCNA_00516 0.57 +0.8
532,177 - CCNA_00516 0.66 -0.0
532,249 - CCNA_00516 0.75 +1.5
532,266 + CCNA_00516 0.78 -0.3
532,272 + CCNA_00516 0.79 -0.3
532,275 - CCNA_00516 0.79 +3.4
532,284 - CCNA_00516 0.80 +1.2
532,298 - CCNA_00516 0.82 -1.3
532,334 + CCNA_00516 0.87 -1.0
532,337 - CCNA_00516 0.87 +1.4
532,355 + CCNA_00516 0.90 -2.6
532,355 + CCNA_00516 0.90 +0.3
532,355 + CCNA_00516 0.90 +0.4
532,363 - +0.3
532,383 + +1.7
532,403 + +1.5
532,461 + +1.0
532,461 + +1.3
532,461 + +1.4
532,474 - +0.6
532,501 - CCNA_00517 0.11 +1.2
532,501 - CCNA_00517 0.11 -1.7
532,501 - CCNA_00517 0.11 -0.3

Or see this region's nucleotide sequence