Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27480

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27475 and AO356_27480 are separated by 296 nucleotidesAO356_27480 and AO356_27485 are separated by 45 nucleotides AO356_27475: AO356_27475 - shikimate dehydrogenase, at 6,262,114 to 6,262,938 _27475 AO356_27480: AO356_27480 - hypothetical protein, at 6,263,235 to 6,264,242 _27480 AO356_27485: AO356_27485 - hypothetical protein, at 6,264,288 to 6,265,094 _27485 Position (kb) 6263 6264 6265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6262.250 kb on + strand, within AO356_27475at 6262.250 kb on + strand, within AO356_27475at 6262.251 kb on - strand, within AO356_27475at 6262.251 kb on - strand, within AO356_27475at 6262.254 kb on + strand, within AO356_27475at 6262.255 kb on - strand, within AO356_27475at 6262.255 kb on - strand, within AO356_27475at 6262.460 kb on + strand, within AO356_27475at 6262.512 kb on + strand, within AO356_27475at 6262.514 kb on + strand, within AO356_27475at 6262.515 kb on - strand, within AO356_27475at 6262.620 kb on - strand, within AO356_27475at 6262.654 kb on + strand, within AO356_27475at 6262.655 kb on - strand, within AO356_27475at 6262.738 kb on - strand, within AO356_27475at 6262.740 kb on - strand, within AO356_27475at 6262.779 kb on + strand, within AO356_27475at 6262.936 kb on + strandat 6262.936 kb on + strandat 6262.954 kb on + strandat 6262.954 kb on + strandat 6263.127 kb on + strandat 6263.160 kb on + strandat 6263.163 kb on - strandat 6263.211 kb on + strandat 6263.212 kb on - strandat 6263.212 kb on - strandat 6263.220 kb on - strandat 6263.221 kb on + strandat 6263.258 kb on - strandat 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.525 kb on + strand, within AO356_27480at 6263.614 kb on + strand, within AO356_27480at 6263.615 kb on - strand, within AO356_27480at 6263.704 kb on - strand, within AO356_27480at 6263.759 kb on + strand, within AO356_27480at 6263.759 kb on + strand, within AO356_27480at 6263.760 kb on - strand, within AO356_27480at 6263.818 kb on + strand, within AO356_27480at 6263.819 kb on - strand, within AO356_27480at 6263.997 kb on + strand, within AO356_27480at 6263.997 kb on + strand, within AO356_27480at 6263.998 kb on - strand, within AO356_27480at 6264.084 kb on + strand, within AO356_27480at 6264.085 kb on - strand, within AO356_27480at 6264.088 kb on - strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.192 kb on + strandat 6264.407 kb on - strand, within AO356_27485at 6264.432 kb on + strand, within AO356_27485at 6264.432 kb on + strand, within AO356_27485at 6264.433 kb on - strand, within AO356_27485at 6264.904 kb on + strand, within AO356_27485at 6265.102 kb on + strandat 6265.103 kb on - strandat 6265.103 kb on - strandat 6265.168 kb on + strandat 6265.168 kb on + strandat 6265.179 kb on + strandat 6265.179 kb on + strandat 6265.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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6,262,250 + AO356_27475 0.16 -2.2
6,262,250 + AO356_27475 0.16 -0.4
6,262,251 - AO356_27475 0.17 -0.8
6,262,251 - AO356_27475 0.17 +0.1
6,262,254 + AO356_27475 0.17 +0.6
6,262,255 - AO356_27475 0.17 +0.4
6,262,255 - AO356_27475 0.17 -1.1
6,262,460 + AO356_27475 0.42 +0.6
6,262,512 + AO356_27475 0.48 -0.5
6,262,514 + AO356_27475 0.48 +0.6
6,262,515 - AO356_27475 0.49 -0.5
6,262,620 - AO356_27475 0.61 +0.1
6,262,654 + AO356_27475 0.65 -0.7
6,262,655 - AO356_27475 0.66 -0.1
6,262,738 - AO356_27475 0.76 +0.4
6,262,740 - AO356_27475 0.76 -1.1
6,262,779 + AO356_27475 0.81 -0.6
6,262,936 + +1.1
6,262,936 + -0.8
6,262,954 + -0.1
6,262,954 + -1.5
6,263,127 + +0.7
6,263,160 + -0.3
6,263,163 - -0.0
6,263,211 + +0.4
6,263,212 - -0.9
6,263,212 - -0.6
6,263,220 - +0.0
6,263,221 + +0.8
6,263,258 - -0.2
6,263,460 + AO356_27480 0.22 +0.1
6,263,460 + AO356_27480 0.22 -0.2
6,263,460 + AO356_27480 0.22 -0.1
6,263,460 + AO356_27480 0.22 +0.3
6,263,460 + AO356_27480 0.22 -0.2
6,263,460 + AO356_27480 0.22 +0.8
6,263,460 + AO356_27480 0.22 +1.3
6,263,461 - AO356_27480 0.22 +2.1
6,263,461 - AO356_27480 0.22 -0.9
6,263,461 - AO356_27480 0.22 -0.5
6,263,461 - AO356_27480 0.22 +0.4
6,263,525 + AO356_27480 0.29 +0.3
6,263,614 + AO356_27480 0.38 -0.8
6,263,615 - AO356_27480 0.38 +0.5
6,263,704 - AO356_27480 0.47 +1.2
6,263,759 + AO356_27480 0.52 +1.3
6,263,759 + AO356_27480 0.52 +0.4
6,263,760 - AO356_27480 0.52 -1.2
6,263,818 + AO356_27480 0.58 +0.4
6,263,819 - AO356_27480 0.58 -0.9
6,263,997 + AO356_27480 0.76 -0.3
6,263,997 + AO356_27480 0.76 +0.7
6,263,998 - AO356_27480 0.76 +1.1
6,264,084 + AO356_27480 0.84 -0.1
6,264,085 - AO356_27480 0.84 +1.1
6,264,088 - AO356_27480 0.85 +3.1
6,264,135 + AO356_27480 0.89 -1.0
6,264,135 + AO356_27480 0.89 -0.9
6,264,135 + AO356_27480 0.89 -1.1
6,264,135 + AO356_27480 0.89 +1.4
6,264,192 + +0.5
6,264,407 - AO356_27485 0.15 +0.5
6,264,432 + AO356_27485 0.18 -2.1
6,264,432 + AO356_27485 0.18 +1.8
6,264,433 - AO356_27485 0.18 +0.3
6,264,904 + AO356_27485 0.76 +0.4
6,265,102 + +1.1
6,265,103 - +0.7
6,265,103 - +0.5
6,265,168 + -0.0
6,265,168 + -0.4
6,265,179 + -0.0
6,265,179 + -1.2
6,265,228 - +0.0

Or see this region's nucleotide sequence