Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24810

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24805 and AO356_24810 are separated by 214 nucleotidesAO356_24810 and AO356_24815 are separated by 196 nucleotides AO356_24805: AO356_24805 - alkaline phosphatase, at 5,609,654 to 5,610,823 _24805 AO356_24810: AO356_24810 - hemagglutinin, at 5,611,038 to 5,623,655 _24810 AO356_24815: AO356_24815 - diguanylate cyclase, at 5,623,852 to 5,626,425 _24815 Position (kb) 5611 5612 5613 5614 5615 5616 5617 5618 5619 5620 5621 5622 5623 5624Strain fitness (log2 ratio) -2 -1 0 1 2at 5610.341 kb on + strand, within AO356_24805at 5610.342 kb on - strand, within AO356_24805at 5610.342 kb on - strand, within AO356_24805at 5610.554 kb on + strand, within AO356_24805at 5610.968 kb on - strandat 5610.968 kb on - strandat 5610.968 kb on - strandat 5611.035 kb on - strandat 5611.035 kb on - strandat 5611.035 kb on - strandat 5611.797 kb on + strandat 5611.797 kb on + strandat 5611.798 kb on - strandat 5611.798 kb on - strandat 5611.915 kb on - strandat 5612.004 kb on + strandat 5612.004 kb on + strandat 5612.005 kb on - strandat 5612.703 kb on + strand, within AO356_24810at 5612.703 kb on + strand, within AO356_24810at 5612.745 kb on + strand, within AO356_24810at 5612.993 kb on + strand, within AO356_24810at 5613.004 kb on - strand, within AO356_24810at 5613.004 kb on - strand, within AO356_24810at 5613.013 kb on - strand, within AO356_24810at 5613.051 kb on + strand, within AO356_24810at 5613.051 kb on + strand, within AO356_24810at 5613.051 kb on + strand, within AO356_24810at 5613.052 kb on - strand, within AO356_24810at 5613.052 kb on - strand, within AO356_24810at 5613.052 kb on - strand, within AO356_24810at 5613.052 kb on - strand, within AO356_24810at 5613.054 kb on + strand, within AO356_24810at 5613.054 kb on + strand, within AO356_24810at 5613.279 kb on + strand, within AO356_24810at 5613.279 kb on + strand, within AO356_24810at 5613.280 kb on - strand, within AO356_24810at 5613.280 kb on - strand, within AO356_24810at 5613.280 kb on - strand, within AO356_24810at 5613.291 kb on + strand, within AO356_24810at 5613.292 kb on - strand, within AO356_24810at 5613.536 kb on + strand, within AO356_24810at 5614.261 kb on - strand, within AO356_24810at 5614.460 kb on + strand, within AO356_24810at 5614.626 kb on + strand, within AO356_24810at 5614.627 kb on - strand, within AO356_24810at 5614.636 kb on + strand, within AO356_24810at 5615.044 kb on - strand, within AO356_24810at 5615.172 kb on + strand, within AO356_24810at 5615.239 kb on + strand, within AO356_24810at 5615.239 kb on + strand, within AO356_24810at 5615.239 kb on + strand, within AO356_24810at 5615.240 kb on - strand, within AO356_24810at 5615.240 kb on - strand, within AO356_24810at 5615.240 kb on - strand, within AO356_24810at 5615.240 kb on - strand, within AO356_24810at 5615.240 kb on - strand, within AO356_24810at 5615.240 kb on - strand, within AO356_24810at 5615.240 kb on - strand, within AO356_24810at 5615.279 kb on + strand, within AO356_24810at 5615.283 kb on + strand, within AO356_24810at 5615.284 kb on - strand, within AO356_24810at 5615.284 kb on - strand, within AO356_24810at 5615.284 kb on - strand, within AO356_24810at 5615.461 kb on + strand, within AO356_24810at 5615.462 kb on - strand, within AO356_24810at 5615.516 kb on + strand, within AO356_24810at 5615.706 kb on + strand, within AO356_24810at 5615.765 kb on - strand, within AO356_24810at 5615.987 kb on + strand, within AO356_24810at 5616.128 kb on - strand, within AO356_24810at 5616.183 kb on + strand, within AO356_24810at 5616.183 kb on + strand, within AO356_24810at 5616.270 kb on - strand, within AO356_24810at 5616.309 kb on + strand, within AO356_24810at 5616.309 kb on + strand, within AO356_24810at 5616.309 kb on + strand, within AO356_24810at 5616.309 kb on + strand, within AO356_24810at 5616.309 kb on + strand, within AO356_24810at 5616.309 kb on + strand, within AO356_24810at 5616.309 kb on + strand, within AO356_24810at 5616.310 kb on - strand, within AO356_24810at 5616.310 kb on - strand, within AO356_24810at 5616.310 kb on - strand, within AO356_24810at 5616.311 kb on + strand, within AO356_24810at 5616.311 kb on + strand, within AO356_24810at 5616.330 kb on + strand, within AO356_24810at 5616.330 kb on + strand, within AO356_24810at 5616.529 kb on - strand, within AO356_24810at 5616.531 kb on - strand, within AO356_24810at 5616.544 kb on - strand, within AO356_24810at 5616.625 kb on + strand, within AO356_24810at 5616.702 kb on + strand, within AO356_24810at 5616.737 kb on + strand, within AO356_24810at 5616.738 kb on - strand, within AO356_24810at 5616.867 kb on + strand, within AO356_24810at 5616.867 kb on + strand, within AO356_24810at 5616.886 kb on - strand, within AO356_24810at 5616.886 kb on - strand, within AO356_24810at 5616.955 kb on + strand, within AO356_24810at 5617.010 kb on + strand, within AO356_24810at 5617.011 kb on - strand, within AO356_24810at 5617.011 kb on - strand, within AO356_24810at 5617.035 kb on + strand, within AO356_24810at 5617.035 kb on + strand, within AO356_24810at 5617.056 kb on - strand, within AO356_24810at 5617.059 kb on + strand, within AO356_24810at 5617.060 kb on - strand, within AO356_24810at 5617.086 kb on + strand, within AO356_24810at 5617.087 kb on - strand, within AO356_24810at 5617.087 kb on - strand, within AO356_24810at 5617.087 kb on - strand, within AO356_24810at 5617.301 kb on + strand, within AO356_24810at 5617.301 kb on + strand, within AO356_24810at 5617.302 kb on - strand, within AO356_24810at 5617.302 kb on - strand, within AO356_24810at 5617.305 kb on - strand, within AO356_24810at 5617.305 kb on - strand, within AO356_24810at 5617.305 kb on - strand, within AO356_24810at 5617.419 kb on + strand, within AO356_24810at 5617.444 kb on + strand, within AO356_24810at 5617.500 kb on + strand, within AO356_24810at 5617.500 kb on + strand, within AO356_24810at 5617.501 kb on - strand, within AO356_24810at 5617.501 kb on - strand, within AO356_24810at 5617.560 kb on + strand, within AO356_24810at 5617.560 kb on + strand, within AO356_24810at 5617.725 kb on - strand, within AO356_24810at 5617.837 kb on - strand, within AO356_24810at 5617.946 kb on + strand, within AO356_24810at 5617.947 kb on - strand, within AO356_24810at 5617.969 kb on + strand, within AO356_24810at 5617.969 kb on + strand, within AO356_24810at 5617.970 kb on - strand, within AO356_24810at 5618.603 kb on - strand, within AO356_24810at 5618.716 kb on - strand, within AO356_24810at 5618.975 kb on + strand, within AO356_24810at 5618.975 kb on + strand, within AO356_24810at 5618.975 kb on + strand, within AO356_24810at 5618.975 kb on + strand, within AO356_24810at 5618.976 kb on - strand, within AO356_24810at 5618.976 kb on - strand, within AO356_24810at 5618.985 kb on + strand, within AO356_24810at 5618.986 kb on - strand, within AO356_24810at 5619.054 kb on + strand, within AO356_24810at 5619.054 kb on + strand, within AO356_24810at 5619.055 kb on - strand, within AO356_24810at 5619.297 kb on + strand, within AO356_24810at 5619.298 kb on - strand, within AO356_24810at 5619.298 kb on - strand, within AO356_24810at 5619.350 kb on + strand, within AO356_24810at 5619.350 kb on + strand, within AO356_24810at 5619.351 kb on - strand, within AO356_24810at 5619.355 kb on - strand, within AO356_24810at 5619.488 kb on + strand, within AO356_24810at 5619.526 kb on + strand, within AO356_24810at 5619.527 kb on - strand, within AO356_24810at 5619.527 kb on - strand, within AO356_24810at 5619.527 kb on - strand, within AO356_24810at 5619.818 kb on + strand, within AO356_24810at 5619.916 kb on + strand, within AO356_24810at 5619.917 kb on - strand, within AO356_24810at 5619.917 kb on - strand, within AO356_24810at 5620.189 kb on + strand, within AO356_24810at 5620.190 kb on - strand, within AO356_24810at 5620.453 kb on - strand, within AO356_24810at 5620.453 kb on - strand, within AO356_24810at 5620.560 kb on + strand, within AO356_24810at 5620.561 kb on - strand, within AO356_24810at 5620.845 kb on - strand, within AO356_24810at 5620.917 kb on - strand, within AO356_24810at 5620.920 kb on + strand, within AO356_24810at 5620.921 kb on - strand, within AO356_24810at 5620.922 kb on + strand, within AO356_24810at 5620.922 kb on + strand, within AO356_24810at 5621.005 kb on + strand, within AO356_24810at 5621.006 kb on - strand, within AO356_24810at 5621.006 kb on - strand, within AO356_24810at 5621.337 kb on + strand, within AO356_24810at 5621.337 kb on + strand, within AO356_24810at 5621.449 kb on + strand, within AO356_24810at 5621.450 kb on - strand, within AO356_24810at 5621.528 kb on + strand, within AO356_24810at 5621.528 kb on + strand, within AO356_24810at 5621.529 kb on - strand, within AO356_24810at 5621.579 kb on + strand, within AO356_24810at 5621.580 kb on - strand, within AO356_24810at 5621.580 kb on - strand, within AO356_24810at 5621.667 kb on + strand, within AO356_24810at 5621.668 kb on - strand, within AO356_24810at 5621.668 kb on - strand, within AO356_24810at 5621.671 kb on - strand, within AO356_24810at 5621.671 kb on - strand, within AO356_24810at 5621.671 kb on - strand, within AO356_24810at 5621.731 kb on + strand, within AO356_24810at 5621.785 kb on - strand, within AO356_24810at 5621.891 kb on + strand, within AO356_24810at 5621.912 kb on + strand, within AO356_24810at 5621.913 kb on - strand, within AO356_24810at 5621.913 kb on - strand, within AO356_24810at 5621.913 kb on - strand, within AO356_24810at 5622.010 kb on - strand, within AO356_24810at 5622.096 kb on + strand, within AO356_24810at 5622.096 kb on + strand, within AO356_24810at 5622.096 kb on + strand, within AO356_24810at 5622.097 kb on - strand, within AO356_24810at 5622.097 kb on - strand, within AO356_24810at 5622.100 kb on - strand, within AO356_24810at 5622.100 kb on - strand, within AO356_24810at 5622.201 kb on + strand, within AO356_24810at 5622.280 kb on - strand, within AO356_24810at 5622.472 kb on - strandat 5622.472 kb on - strandat 5622.543 kb on + strandat 5622.699 kb on + strandat 5622.700 kb on - strandat 5622.801 kb on + strandat 5622.802 kb on - strandat 5622.966 kb on + strandat 5622.966 kb on + strandat 5622.966 kb on + strandat 5623.089 kb on + strandat 5623.111 kb on - strandat 5623.554 kb on + strandat 5623.555 kb on - strandat 5623.653 kb on + strandat 5623.774 kb on + strandat 5623.774 kb on + strandat 5623.916 kb on + strandat 5623.998 kb on + strandat 5623.999 kb on - strandat 5624.643 kb on - strand, within AO356_24815

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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5,610,341 + AO356_24805 0.59 +0.6
5,610,342 - AO356_24805 0.59 +0.4
5,610,342 - AO356_24805 0.59 -1.2
5,610,554 + AO356_24805 0.77 +0.3
5,610,968 - +0.2
5,610,968 - +0.0
5,610,968 - +0.2
5,611,035 - +0.2
5,611,035 - -1.1
5,611,035 - +0.2
5,611,797 + +0.3
5,611,797 + +0.7
5,611,798 - -0.5
5,611,798 - -0.3
5,611,915 - +0.1
5,612,004 + -0.7
5,612,004 + +0.2
5,612,005 - -1.8
5,612,703 + AO356_24810 0.13 +0.2
5,612,703 + AO356_24810 0.13 -0.4
5,612,745 + AO356_24810 0.14 -0.5
5,612,993 + AO356_24810 0.15 -0.5
5,613,004 - AO356_24810 0.16 -2.0
5,613,004 - AO356_24810 0.16 -0.1
5,613,013 - AO356_24810 0.16 -1.9
5,613,051 + AO356_24810 0.16 +1.5
5,613,051 + AO356_24810 0.16 -0.8
5,613,051 + AO356_24810 0.16 -2.4
5,613,052 - AO356_24810 0.16 +1.0
5,613,052 - AO356_24810 0.16 +0.7
5,613,052 - AO356_24810 0.16 -0.6
5,613,052 - AO356_24810 0.16 -0.5
5,613,054 + AO356_24810 0.16 +0.2
5,613,054 + AO356_24810 0.16 +1.7
5,613,279 + AO356_24810 0.18 -0.5
5,613,279 + AO356_24810 0.18 +0.4
5,613,280 - AO356_24810 0.18 -0.1
5,613,280 - AO356_24810 0.18 -1.2
5,613,280 - AO356_24810 0.18 -0.4
5,613,291 + AO356_24810 0.18 +1.2
5,613,292 - AO356_24810 0.18 +0.0
5,613,536 + AO356_24810 0.20 -0.0
5,614,261 - AO356_24810 0.26 +0.1
5,614,460 + AO356_24810 0.27 -0.1
5,614,626 + AO356_24810 0.28 +0.1
5,614,627 - AO356_24810 0.28 +0.2
5,614,636 + AO356_24810 0.29 +0.8
5,615,044 - AO356_24810 0.32 +0.8
5,615,172 + AO356_24810 0.33 +0.8
5,615,239 + AO356_24810 0.33 +0.3
5,615,239 + AO356_24810 0.33 +0.5
5,615,239 + AO356_24810 0.33 -0.3
5,615,240 - AO356_24810 0.33 +0.2
5,615,240 - AO356_24810 0.33 -0.7
5,615,240 - AO356_24810 0.33 -0.6
5,615,240 - AO356_24810 0.33 -0.7
5,615,240 - AO356_24810 0.33 +1.2
5,615,240 - AO356_24810 0.33 +0.4
5,615,240 - AO356_24810 0.33 +0.3
5,615,279 + AO356_24810 0.34 +0.9
5,615,283 + AO356_24810 0.34 +0.3
5,615,284 - AO356_24810 0.34 -0.9
5,615,284 - AO356_24810 0.34 -0.4
5,615,284 - AO356_24810 0.34 -1.1
5,615,461 + AO356_24810 0.35 -0.7
5,615,462 - AO356_24810 0.35 -0.2
5,615,516 + AO356_24810 0.35 -0.7
5,615,706 + AO356_24810 0.37 -0.5
5,615,765 - AO356_24810 0.37 +1.2
5,615,987 + AO356_24810 0.39 +1.0
5,616,128 - AO356_24810 0.40 -1.0
5,616,183 + AO356_24810 0.41 +0.1
5,616,183 + AO356_24810 0.41 -0.5
5,616,270 - AO356_24810 0.41 -0.4
5,616,309 + AO356_24810 0.42 +0.5
5,616,309 + AO356_24810 0.42 +0.4
5,616,309 + AO356_24810 0.42 -0.2
5,616,309 + AO356_24810 0.42 -0.2
5,616,309 + AO356_24810 0.42 +0.9
5,616,309 + AO356_24810 0.42 +0.5
5,616,309 + AO356_24810 0.42 +0.5
5,616,310 - AO356_24810 0.42 +2.5
5,616,310 - AO356_24810 0.42 +0.8
5,616,310 - AO356_24810 0.42 +0.1
5,616,311 + AO356_24810 0.42 -0.1
5,616,311 + AO356_24810 0.42 +0.2
5,616,330 + AO356_24810 0.42 -0.3
5,616,330 + AO356_24810 0.42 +0.2
5,616,529 - AO356_24810 0.44 +1.2
5,616,531 - AO356_24810 0.44 +0.6
5,616,544 - AO356_24810 0.44 -0.6
5,616,625 + AO356_24810 0.44 +0.3
5,616,702 + AO356_24810 0.45 -0.2
5,616,737 + AO356_24810 0.45 -1.2
5,616,738 - AO356_24810 0.45 +0.7
5,616,867 + AO356_24810 0.46 +0.4
5,616,867 + AO356_24810 0.46 -0.1
5,616,886 - AO356_24810 0.46 +1.1
5,616,886 - AO356_24810 0.46 -0.2
5,616,955 + AO356_24810 0.47 +0.1
5,617,010 + AO356_24810 0.47 -1.0
5,617,011 - AO356_24810 0.47 +0.3
5,617,011 - AO356_24810 0.47 -0.6
5,617,035 + AO356_24810 0.48 +1.6
5,617,035 + AO356_24810 0.48 +1.0
5,617,056 - AO356_24810 0.48 +0.8
5,617,059 + AO356_24810 0.48 +0.7
5,617,060 - AO356_24810 0.48 -0.6
5,617,086 + AO356_24810 0.48 +1.9
5,617,087 - AO356_24810 0.48 +1.0
5,617,087 - AO356_24810 0.48 -0.0
5,617,087 - AO356_24810 0.48 -0.2
5,617,301 + AO356_24810 0.50 +0.4
5,617,301 + AO356_24810 0.50 -0.0
5,617,302 - AO356_24810 0.50 +1.5
5,617,302 - AO356_24810 0.50 -0.8
5,617,305 - AO356_24810 0.50 -0.1
5,617,305 - AO356_24810 0.50 +0.4
5,617,305 - AO356_24810 0.50 +0.6
5,617,419 + AO356_24810 0.51 +1.0
5,617,444 + AO356_24810 0.51 -0.8
5,617,500 + AO356_24810 0.51 -0.3
5,617,500 + AO356_24810 0.51 +0.7
5,617,501 - AO356_24810 0.51 -0.3
5,617,501 - AO356_24810 0.51 -1.3
5,617,560 + AO356_24810 0.52 +0.4
5,617,560 + AO356_24810 0.52 -0.4
5,617,725 - AO356_24810 0.53 -1.2
5,617,837 - AO356_24810 0.54 +1.2
5,617,946 + AO356_24810 0.55 +0.4
5,617,947 - AO356_24810 0.55 +0.2
5,617,969 + AO356_24810 0.55 -0.4
5,617,969 + AO356_24810 0.55 -0.1
5,617,970 - AO356_24810 0.55 +0.5
5,618,603 - AO356_24810 0.60 -0.5
5,618,716 - AO356_24810 0.61 +0.4
5,618,975 + AO356_24810 0.63 -0.8
5,618,975 + AO356_24810 0.63 +0.1
5,618,975 + AO356_24810 0.63 -2.0
5,618,975 + AO356_24810 0.63 +0.1
5,618,976 - AO356_24810 0.63 +0.0
5,618,976 - AO356_24810 0.63 -0.3
5,618,985 + AO356_24810 0.63 +0.4
5,618,986 - AO356_24810 0.63 -1.3
5,619,054 + AO356_24810 0.64 +0.4
5,619,054 + AO356_24810 0.64 +0.3
5,619,055 - AO356_24810 0.64 +0.9
5,619,297 + AO356_24810 0.65 +0.2
5,619,298 - AO356_24810 0.65 -0.5
5,619,298 - AO356_24810 0.65 +0.4
5,619,350 + AO356_24810 0.66 -0.6
5,619,350 + AO356_24810 0.66 -0.4
5,619,351 - AO356_24810 0.66 +0.6
5,619,355 - AO356_24810 0.66 +0.6
5,619,488 + AO356_24810 0.67 +0.4
5,619,526 + AO356_24810 0.67 +1.2
5,619,527 - AO356_24810 0.67 -0.5
5,619,527 - AO356_24810 0.67 +0.6
5,619,527 - AO356_24810 0.67 +0.4
5,619,818 + AO356_24810 0.70 +0.2
5,619,916 + AO356_24810 0.70 +0.0
5,619,917 - AO356_24810 0.70 +0.2
5,619,917 - AO356_24810 0.70 -0.3
5,620,189 + AO356_24810 0.73 -0.3
5,620,190 - AO356_24810 0.73 +0.5
5,620,453 - AO356_24810 0.75 -0.5
5,620,453 - AO356_24810 0.75 -0.4
5,620,560 + AO356_24810 0.75 +0.2
5,620,561 - AO356_24810 0.75 -1.8
5,620,845 - AO356_24810 0.78 +0.4
5,620,917 - AO356_24810 0.78 -0.6
5,620,920 + AO356_24810 0.78 +1.2
5,620,921 - AO356_24810 0.78 -1.4
5,620,922 + AO356_24810 0.78 -0.0
5,620,922 + AO356_24810 0.78 +0.4
5,621,005 + AO356_24810 0.79 +0.1
5,621,006 - AO356_24810 0.79 -0.2
5,621,006 - AO356_24810 0.79 +0.1
5,621,337 + AO356_24810 0.82 +1.7
5,621,337 + AO356_24810 0.82 -0.5
5,621,449 + AO356_24810 0.83 -1.3
5,621,450 - AO356_24810 0.83 -0.0
5,621,528 + AO356_24810 0.83 -0.6
5,621,528 + AO356_24810 0.83 +0.9
5,621,529 - AO356_24810 0.83 -1.5
5,621,579 + AO356_24810 0.84 +1.2
5,621,580 - AO356_24810 0.84 +0.3
5,621,580 - AO356_24810 0.84 -0.8
5,621,667 + AO356_24810 0.84 -0.4
5,621,668 - AO356_24810 0.84 -0.4
5,621,668 - AO356_24810 0.84 -0.3
5,621,671 - AO356_24810 0.84 -0.1
5,621,671 - AO356_24810 0.84 -0.3
5,621,671 - AO356_24810 0.84 -0.7
5,621,731 + AO356_24810 0.85 +0.6
5,621,785 - AO356_24810 0.85 +0.7
5,621,891 + AO356_24810 0.86 -0.4
5,621,912 + AO356_24810 0.86 +1.2
5,621,913 - AO356_24810 0.86 +0.5
5,621,913 - AO356_24810 0.86 -0.2
5,621,913 - AO356_24810 0.86 +0.3
5,622,010 - AO356_24810 0.87 -1.1
5,622,096 + AO356_24810 0.88 +0.2
5,622,096 + AO356_24810 0.88 +0.0
5,622,096 + AO356_24810 0.88 +1.5
5,622,097 - AO356_24810 0.88 -0.3
5,622,097 - AO356_24810 0.88 -1.4
5,622,100 - AO356_24810 0.88 +0.1
5,622,100 - AO356_24810 0.88 +0.2
5,622,201 + AO356_24810 0.88 -1.4
5,622,280 - AO356_24810 0.89 -0.6
5,622,472 - +0.0
5,622,472 - +0.9
5,622,543 + -0.1
5,622,699 + -0.1
5,622,700 - +0.2
5,622,801 + -0.6
5,622,802 - +0.2
5,622,966 + -0.9
5,622,966 + -0.5
5,622,966 + +0.7
5,623,089 + +1.1
5,623,111 - -0.1
5,623,554 + -0.0
5,623,555 - -0.4
5,623,653 + -1.4
5,623,774 + -0.4
5,623,774 + +0.2
5,623,916 + -0.2
5,623,998 + -0.6
5,623,999 - +0.8
5,624,643 - AO356_24815 0.31 -0.5

Or see this region's nucleotide sequence