Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21250

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21245 and AO356_21250 are separated by 12 nucleotidesAO356_21250 and AO356_21255 are separated by 273 nucleotides AO356_21245: AO356_21245 - cytosine deaminase, at 4,767,732 to 4,768,979 _21245 AO356_21250: AO356_21250 - cytosine permease, at 4,768,992 to 4,770,263 _21250 AO356_21255: AO356_21255 - alpha/beta hydrolase, at 4,770,537 to 4,771,367 _21255 Position (kb) 4768 4769 4770 4771Strain fitness (log2 ratio) -2 -1 0 1 2at 4768.225 kb on + strand, within AO356_21245at 4768.226 kb on - strand, within AO356_21245at 4768.433 kb on - strand, within AO356_21245at 4768.433 kb on - strand, within AO356_21245at 4768.993 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.996 kb on - strandat 4768.996 kb on - strandat 4768.996 kb on - strandat 4769.005 kb on - strandat 4769.005 kb on - strandat 4769.027 kb on + strandat 4769.046 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.270 kb on - strand, within AO356_21250at 4769.270 kb on - strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.291 kb on + strand, within AO356_21250at 4769.291 kb on + strand, within AO356_21250at 4769.292 kb on - strand, within AO356_21250at 4769.292 kb on - strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.481 kb on + strand, within AO356_21250at 4769.481 kb on + strand, within AO356_21250at 4769.482 kb on - strand, within AO356_21250at 4769.497 kb on + strand, within AO356_21250at 4769.497 kb on + strand, within AO356_21250at 4769.498 kb on - strand, within AO356_21250at 4769.685 kb on - strand, within AO356_21250at 4769.772 kb on + strand, within AO356_21250at 4769.773 kb on - strand, within AO356_21250at 4769.782 kb on + strand, within AO356_21250at 4769.782 kb on + strand, within AO356_21250at 4769.783 kb on - strand, within AO356_21250at 4769.783 kb on - strand, within AO356_21250at 4769.815 kb on + strand, within AO356_21250at 4769.815 kb on + strand, within AO356_21250at 4769.887 kb on + strand, within AO356_21250at 4769.888 kb on - strand, within AO356_21250at 4769.929 kb on + strand, within AO356_21250at 4770.041 kb on - strand, within AO356_21250at 4770.058 kb on + strand, within AO356_21250at 4770.058 kb on + strand, within AO356_21250at 4770.236 kb on - strandat 4770.236 kb on - strandat 4770.333 kb on + strandat 4770.333 kb on + strandat 4770.333 kb on + strandat 4770.333 kb on + strandat 4770.334 kb on - strandat 4770.334 kb on - strandat 4770.337 kb on + strandat 4770.337 kb on + strandat 4770.338 kb on - strandat 4770.339 kb on + strandat 4770.340 kb on - strandat 4770.838 kb on + strand, within AO356_21255at 4770.838 kb on + strand, within AO356_21255at 4770.889 kb on + strand, within AO356_21255at 4770.889 kb on + strand, within AO356_21255at 4770.889 kb on + strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4771.201 kb on + strand, within AO356_21255at 4771.202 kb on - strand, within AO356_21255at 4771.202 kb on - strand, within AO356_21255at 4771.202 kb on - strand, within AO356_21255at 4771.252 kb on + strand, within AO356_21255at 4771.253 kb on - strand, within AO356_21255at 4771.253 kb on - strand, within AO356_21255at 4771.253 kb on - strand, within AO356_21255

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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4,768,225 + AO356_21245 0.40 +0.8
4,768,226 - AO356_21245 0.40 -0.2
4,768,433 - AO356_21245 0.56 -1.0
4,768,433 - AO356_21245 0.56 +0.1
4,768,993 + -0.1
4,768,995 + +0.9
4,768,995 + +0.1
4,768,995 + -0.5
4,768,995 + +1.4
4,768,995 + -0.4
4,768,996 - -0.1
4,768,996 - +0.5
4,768,996 - -0.4
4,769,005 - -0.7
4,769,005 - -0.4
4,769,027 + -0.8
4,769,046 + +0.1
4,769,053 + -0.3
4,769,053 + +0.6
4,769,053 + +0.8
4,769,053 + +0.4
4,769,053 + +0.2
4,769,053 + +0.4
4,769,053 + -0.2
4,769,053 + +1.2
4,769,054 - -0.9
4,769,054 - -0.8
4,769,054 - -0.6
4,769,054 - +1.7
4,769,054 - -0.2
4,769,054 - +0.0
4,769,054 - -2.2
4,769,270 - AO356_21250 0.22 +0.7
4,769,270 - AO356_21250 0.22 -0.7
4,769,287 + AO356_21250 0.23 +0.5
4,769,287 + AO356_21250 0.23 -1.5
4,769,287 + AO356_21250 0.23 +1.2
4,769,287 + AO356_21250 0.23 -0.4
4,769,287 + AO356_21250 0.23 +0.8
4,769,287 + AO356_21250 0.23 +1.8
4,769,287 + AO356_21250 0.23 +0.8
4,769,287 + AO356_21250 0.23 -0.3
4,769,288 - AO356_21250 0.23 +0.9
4,769,288 - AO356_21250 0.23 +0.4
4,769,288 - AO356_21250 0.23 +1.1
4,769,288 - AO356_21250 0.23 +0.1
4,769,288 - AO356_21250 0.23 +0.6
4,769,288 - AO356_21250 0.23 +0.5
4,769,288 - AO356_21250 0.23 +0.1
4,769,291 + AO356_21250 0.24 -0.0
4,769,291 + AO356_21250 0.24 +0.1
4,769,292 - AO356_21250 0.24 +0.1
4,769,292 - AO356_21250 0.24 +0.8
4,769,392 + AO356_21250 0.31 +0.0
4,769,392 + AO356_21250 0.31 -0.6
4,769,392 + AO356_21250 0.31 -0.2
4,769,392 + AO356_21250 0.31 -0.9
4,769,392 + AO356_21250 0.31 +0.6
4,769,392 + AO356_21250 0.31 +0.6
4,769,481 + AO356_21250 0.38 -0.8
4,769,481 + AO356_21250 0.38 -0.2
4,769,482 - AO356_21250 0.39 +0.9
4,769,497 + AO356_21250 0.40 +0.4
4,769,497 + AO356_21250 0.40 +0.4
4,769,498 - AO356_21250 0.40 +1.2
4,769,685 - AO356_21250 0.54 +1.0
4,769,772 + AO356_21250 0.61 -0.2
4,769,773 - AO356_21250 0.61 -0.1
4,769,782 + AO356_21250 0.62 +0.1
4,769,782 + AO356_21250 0.62 +0.1
4,769,783 - AO356_21250 0.62 -0.6
4,769,783 - AO356_21250 0.62 -1.0
4,769,815 + AO356_21250 0.65 +1.0
4,769,815 + AO356_21250 0.65 -0.1
4,769,887 + AO356_21250 0.70 -0.8
4,769,888 - AO356_21250 0.70 -0.3
4,769,929 + AO356_21250 0.74 -0.2
4,770,041 - AO356_21250 0.82 +0.3
4,770,058 + AO356_21250 0.84 -0.5
4,770,058 + AO356_21250 0.84 +0.4
4,770,236 - +0.6
4,770,236 - -0.9
4,770,333 + -0.2
4,770,333 + +1.0
4,770,333 + +0.6
4,770,333 + -0.1
4,770,334 - -0.6
4,770,334 - -0.2
4,770,337 + +0.1
4,770,337 + -1.4
4,770,338 - +1.1
4,770,339 + +0.7
4,770,340 - +0.5
4,770,838 + AO356_21255 0.36 +0.3
4,770,838 + AO356_21255 0.36 +0.9
4,770,889 + AO356_21255 0.42 +0.5
4,770,889 + AO356_21255 0.42 -0.4
4,770,889 + AO356_21255 0.42 -0.5
4,770,890 - AO356_21255 0.42 -0.4
4,770,890 - AO356_21255 0.42 +0.2
4,770,890 - AO356_21255 0.42 -0.2
4,770,890 - AO356_21255 0.42 -0.8
4,770,964 - AO356_21255 0.51 +0.5
4,770,964 - AO356_21255 0.51 +0.1
4,770,964 - AO356_21255 0.51 +0.1
4,770,964 - AO356_21255 0.51 +1.5
4,770,964 - AO356_21255 0.51 +0.4
4,770,964 - AO356_21255 0.51 -0.0
4,771,201 + AO356_21255 0.80 -0.4
4,771,202 - AO356_21255 0.80 -0.1
4,771,202 - AO356_21255 0.80 -1.3
4,771,202 - AO356_21255 0.80 +0.7
4,771,252 + AO356_21255 0.86 -0.7
4,771,253 - AO356_21255 0.86 +0.3
4,771,253 - AO356_21255 0.86 -1.0
4,771,253 - AO356_21255 0.86 -0.8

Or see this region's nucleotide sequence