Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16530 and AO356_16535 are separated by 12 nucleotides AO356_16535 and AO356_16540 overlap by 1 nucleotides AO356_16540 and AO356_16545 are separated by 177 nucleotides
AO356_16530: AO356_16530 - deoxyribodipyrimidine photolyase, at 3,732,849 to 3,734,300
_16530
AO356_16535: AO356_16535 - MerR family transcriptional regulator, at 3,734,313 to 3,735,260
_16535
AO356_16540: AO356_16540 - hypothetical protein, at 3,735,260 to 3,736,222
_16540
AO356_16545: AO356_16545 - FAD-dependent oxidoreductase, at 3,736,400 to 3,737,386
_16545
Position (kb)
3735
3736
3737 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3734.314 kb on + strand at 3734.314 kb on + strand at 3734.314 kb on + strand at 3734.314 kb on + strand at 3734.314 kb on + strand at 3734.314 kb on + strand at 3734.314 kb on + strand at 3734.315 kb on - strand at 3734.315 kb on - strand at 3734.315 kb on - strand at 3734.315 kb on - strand at 3734.315 kb on - strand at 3734.506 kb on + strand, within AO356_16535 at 3734.506 kb on + strand, within AO356_16535 at 3734.506 kb on + strand, within AO356_16535 at 3734.507 kb on - strand, within AO356_16535 at 3734.507 kb on - strand, within AO356_16535 at 3734.507 kb on - strand, within AO356_16535 at 3734.507 kb on - strand, within AO356_16535 at 3734.507 kb on - strand, within AO356_16535 at 3734.704 kb on + strand, within AO356_16535 at 3734.704 kb on + strand, within AO356_16535 at 3734.704 kb on + strand, within AO356_16535 at 3734.704 kb on + strand, within AO356_16535 at 3734.705 kb on - strand, within AO356_16535 at 3734.705 kb on - strand, within AO356_16535 at 3734.741 kb on - strand, within AO356_16535 at 3734.845 kb on + strand, within AO356_16535 at 3734.846 kb on - strand, within AO356_16535 at 3735.177 kb on + strand at 3735.307 kb on - strand at 3735.307 kb on - strand at 3735.324 kb on + strand at 3735.324 kb on + strand at 3735.324 kb on + strand at 3735.324 kb on + strand at 3735.325 kb on - strand at 3735.325 kb on - strand at 3735.325 kb on - strand at 3735.419 kb on + strand, within AO356_16540 at 3735.419 kb on + strand, within AO356_16540 at 3735.419 kb on + strand, within AO356_16540 at 3735.419 kb on + strand, within AO356_16540 at 3735.419 kb on + strand, within AO356_16540 at 3735.419 kb on + strand, within AO356_16540 at 3735.419 kb on + strand, within AO356_16540 at 3735.419 kb on + strand, within AO356_16540 at 3735.420 kb on - strand, within AO356_16540 at 3735.420 kb on - strand, within AO356_16540 at 3735.420 kb on - strand, within AO356_16540 at 3735.540 kb on + strand, within AO356_16540 at 3735.540 kb on + strand, within AO356_16540 at 3735.541 kb on - strand, within AO356_16540 at 3735.541 kb on - strand, within AO356_16540 at 3735.606 kb on + strand, within AO356_16540 at 3735.606 kb on + strand, within AO356_16540 at 3735.606 kb on + strand, within AO356_16540 at 3735.606 kb on + strand, within AO356_16540 at 3735.606 kb on + strand, within AO356_16540 at 3735.606 kb on + strand, within AO356_16540 at 3735.607 kb on - strand, within AO356_16540 at 3735.607 kb on - strand, within AO356_16540 at 3735.607 kb on - strand, within AO356_16540 at 3735.636 kb on + strand, within AO356_16540 at 3735.636 kb on + strand, within AO356_16540 at 3735.636 kb on + strand, within AO356_16540 at 3735.636 kb on + strand, within AO356_16540 at 3735.637 kb on - strand, within AO356_16540 at 3735.637 kb on - strand, within AO356_16540 at 3735.637 kb on - strand, within AO356_16540 at 3735.637 kb on - strand, within AO356_16540 at 3735.637 kb on - strand, within AO356_16540 at 3735.643 kb on - strand, within AO356_16540 at 3735.643 kb on - strand, within AO356_16540 at 3735.711 kb on + strand, within AO356_16540 at 3735.712 kb on - strand, within AO356_16540 at 3735.712 kb on - strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.816 kb on + strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.817 kb on - strand, within AO356_16540 at 3735.820 kb on + strand, within AO356_16540 at 3735.820 kb on + strand, within AO356_16540 at 3735.820 kb on + strand, within AO356_16540 at 3735.821 kb on - strand, within AO356_16540 at 3735.821 kb on - strand, within AO356_16540 at 3735.821 kb on - strand, within AO356_16540 at 3735.861 kb on + strand, within AO356_16540 at 3735.861 kb on + strand, within AO356_16540 at 3735.861 kb on + strand, within AO356_16540 at 3735.861 kb on + strand, within AO356_16540 at 3735.862 kb on - strand, within AO356_16540 at 3735.862 kb on - strand, within AO356_16540 at 3735.862 kb on - strand, within AO356_16540 at 3735.862 kb on - strand, within AO356_16540 at 3735.862 kb on - strand, within AO356_16540 at 3735.913 kb on - strand, within AO356_16540 at 3735.954 kb on + strand, within AO356_16540 at 3735.955 kb on - strand, within AO356_16540 at 3736.101 kb on + strand, within AO356_16540 at 3736.101 kb on + strand, within AO356_16540 at 3736.257 kb on + strand at 3736.283 kb on + strand at 3736.283 kb on + strand at 3736.283 kb on + strand at 3736.283 kb on + strand at 3736.283 kb on + strand at 3736.283 kb on + strand at 3736.284 kb on - strand at 3736.284 kb on - strand at 3736.284 kb on - strand at 3736.284 kb on - strand at 3736.284 kb on - strand at 3736.401 kb on + strand at 3736.401 kb on + strand at 3736.402 kb on - strand at 3736.402 kb on - strand at 3736.402 kb on - strand at 3736.402 kb on - strand at 3736.494 kb on + strand at 3736.494 kb on + strand at 3736.494 kb on + strand at 3736.494 kb on + strand at 3736.494 kb on + strand at 3736.494 kb on + strand at 3736.494 kb on + strand at 3736.494 kb on + strand at 3736.495 kb on - strand at 3736.495 kb on - strand at 3736.495 kb on - strand at 3736.495 kb on - strand at 3736.495 kb on - strand at 3736.495 kb on - strand at 3736.495 kb on - strand at 3736.495 kb on - strand at 3736.554 kb on + strand, within AO356_16545 at 3736.555 kb on - strand, within AO356_16545 at 3736.555 kb on - strand, within AO356_16545 at 3736.772 kb on + strand, within AO356_16545 at 3736.772 kb on + strand, within AO356_16545 at 3736.772 kb on + strand, within AO356_16545 at 3736.772 kb on + strand, within AO356_16545 at 3736.773 kb on - strand, within AO356_16545 at 3736.992 kb on + strand, within AO356_16545 at 3737.130 kb on + strand, within AO356_16545 at 3737.130 kb on + strand, within AO356_16545 at 3737.130 kb on + strand, within AO356_16545 at 3737.130 kb on + strand, within AO356_16545 at 3737.130 kb on + strand, within AO356_16545 at 3737.131 kb on - strand, within AO356_16545 at 3737.131 kb on - strand, within AO356_16545 at 3737.217 kb on + strand, within AO356_16545 at 3737.217 kb on + strand, within AO356_16545 at 3737.217 kb on + strand, within AO356_16545 at 3737.218 kb on - strand, within AO356_16545 at 3737.218 kb on - strand, within AO356_16545 at 3737.218 kb on - strand, within AO356_16545 at 3737.218 kb on - strand, within AO356_16545
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 3,734,314 + +0.4 3,734,314 + -0.1 3,734,314 + -0.9 3,734,314 + -0.0 3,734,314 + +0.2 3,734,314 + +0.5 3,734,314 + -1.0 3,734,315 - -0.7 3,734,315 - +0.4 3,734,315 - +1.8 3,734,315 - -1.0 3,734,315 - -1.3 3,734,506 + AO356_16535 0.20 +0.3 3,734,506 + AO356_16535 0.20 -0.9 3,734,506 + AO356_16535 0.20 -0.2 3,734,507 - AO356_16535 0.20 -0.1 3,734,507 - AO356_16535 0.20 -0.5 3,734,507 - AO356_16535 0.20 +0.2 3,734,507 - AO356_16535 0.20 -1.0 3,734,507 - AO356_16535 0.20 +0.3 3,734,704 + AO356_16535 0.41 -0.2 3,734,704 + AO356_16535 0.41 +0.7 3,734,704 + AO356_16535 0.41 -1.6 3,734,704 + AO356_16535 0.41 +0.9 3,734,705 - AO356_16535 0.41 +0.6 3,734,705 - AO356_16535 0.41 -0.5 3,734,741 - AO356_16535 0.45 -0.9 3,734,845 + AO356_16535 0.56 +1.2 3,734,846 - AO356_16535 0.56 +1.0 3,735,177 + -0.5 3,735,307 - +0.3 3,735,307 - +0.5 3,735,324 + +0.6 3,735,324 + +1.4 3,735,324 + -0.5 3,735,324 + +0.6 3,735,325 - -0.3 3,735,325 - -1.0 3,735,325 - -0.5 3,735,419 + AO356_16540 0.17 -0.1 3,735,419 + AO356_16540 0.17 -0.1 3,735,419 + AO356_16540 0.17 -0.7 3,735,419 + AO356_16540 0.17 +0.5 3,735,419 + AO356_16540 0.17 -0.2 3,735,419 + AO356_16540 0.17 -0.0 3,735,419 + AO356_16540 0.17 -0.7 3,735,419 + AO356_16540 0.17 -0.6 3,735,420 - AO356_16540 0.17 -0.6 3,735,420 - AO356_16540 0.17 +0.2 3,735,420 - AO356_16540 0.17 -0.8 3,735,540 + AO356_16540 0.29 -0.5 3,735,540 + AO356_16540 0.29 -0.0 3,735,541 - AO356_16540 0.29 +2.3 3,735,541 - AO356_16540 0.29 +1.3 3,735,606 + AO356_16540 0.36 -1.5 3,735,606 + AO356_16540 0.36 +0.4 3,735,606 + AO356_16540 0.36 +0.4 3,735,606 + AO356_16540 0.36 +0.2 3,735,606 + AO356_16540 0.36 -0.3 3,735,606 + AO356_16540 0.36 +0.8 3,735,607 - AO356_16540 0.36 -0.7 3,735,607 - AO356_16540 0.36 +0.6 3,735,607 - AO356_16540 0.36 -0.4 3,735,636 + AO356_16540 0.39 -0.0 3,735,636 + AO356_16540 0.39 +0.3 3,735,636 + AO356_16540 0.39 +1.0 3,735,636 + AO356_16540 0.39 -0.7 3,735,637 - AO356_16540 0.39 -0.5 3,735,637 - AO356_16540 0.39 -0.0 3,735,637 - AO356_16540 0.39 +0.2 3,735,637 - AO356_16540 0.39 +0.2 3,735,637 - AO356_16540 0.39 +0.2 3,735,643 - AO356_16540 0.40 +0.3 3,735,643 - AO356_16540 0.40 -0.5 3,735,711 + AO356_16540 0.47 -0.7 3,735,712 - AO356_16540 0.47 -0.9 3,735,712 - AO356_16540 0.47 -0.3 3,735,816 + AO356_16540 0.58 +0.4 3,735,816 + AO356_16540 0.58 +1.0 3,735,816 + AO356_16540 0.58 +0.2 3,735,816 + AO356_16540 0.58 -0.3 3,735,816 + AO356_16540 0.58 +0.4 3,735,816 + AO356_16540 0.58 +0.1 3,735,816 + AO356_16540 0.58 +0.2 3,735,816 + AO356_16540 0.58 +0.4 3,735,817 - AO356_16540 0.58 -0.7 3,735,817 - AO356_16540 0.58 +0.3 3,735,817 - AO356_16540 0.58 +0.4 3,735,817 - AO356_16540 0.58 +0.1 3,735,817 - AO356_16540 0.58 +0.4 3,735,817 - AO356_16540 0.58 +0.8 3,735,817 - AO356_16540 0.58 -1.0 3,735,817 - AO356_16540 0.58 +0.3 3,735,817 - AO356_16540 0.58 -0.5 3,735,817 - AO356_16540 0.58 +0.8 3,735,817 - AO356_16540 0.58 +0.4 3,735,820 + AO356_16540 0.58 +0.6 3,735,820 + AO356_16540 0.58 +0.2 3,735,820 + AO356_16540 0.58 -0.4 3,735,821 - AO356_16540 0.58 -0.4 3,735,821 - AO356_16540 0.58 +1.2 3,735,821 - AO356_16540 0.58 +0.4 3,735,861 + AO356_16540 0.62 -0.0 3,735,861 + AO356_16540 0.62 +0.8 3,735,861 + AO356_16540 0.62 -0.2 3,735,861 + AO356_16540 0.62 +1.3 3,735,862 - AO356_16540 0.63 -0.5 3,735,862 - AO356_16540 0.63 +0.1 3,735,862 - AO356_16540 0.63 -0.3 3,735,862 - AO356_16540 0.63 +0.3 3,735,862 - AO356_16540 0.63 -0.2 3,735,913 - AO356_16540 0.68 +0.1 3,735,954 + AO356_16540 0.72 -1.2 3,735,955 - AO356_16540 0.72 +0.5 3,736,101 + AO356_16540 0.87 -2.2 3,736,101 + AO356_16540 0.87 +0.8 3,736,257 + +0.9 3,736,283 + +0.6 3,736,283 + -0.7 3,736,283 + +0.5 3,736,283 + +0.7 3,736,283 + +0.1 3,736,283 + -0.6 3,736,284 - -0.5 3,736,284 - +0.7 3,736,284 - +0.1 3,736,284 - -0.2 3,736,284 - +0.5 3,736,401 + +1.5 3,736,401 + +0.3 3,736,402 - +0.8 3,736,402 - +1.0 3,736,402 - +0.1 3,736,402 - +0.9 3,736,494 + -0.9 3,736,494 + +0.7 3,736,494 + -1.8 3,736,494 + -0.2 3,736,494 + -1.2 3,736,494 + -0.2 3,736,494 + -0.9 3,736,494 + +1.5 3,736,495 - -0.2 3,736,495 - -0.5 3,736,495 - -0.5 3,736,495 - +0.5 3,736,495 - +1.5 3,736,495 - -0.4 3,736,495 - -1.2 3,736,495 - +0.3 3,736,554 + AO356_16545 0.16 -0.2 3,736,555 - AO356_16545 0.16 -0.3 3,736,555 - AO356_16545 0.16 +0.2 3,736,772 + AO356_16545 0.38 -0.4 3,736,772 + AO356_16545 0.38 +0.7 3,736,772 + AO356_16545 0.38 +0.5 3,736,772 + AO356_16545 0.38 +0.5 3,736,773 - AO356_16545 0.38 +0.1 3,736,992 + AO356_16545 0.60 +0.7 3,737,130 + AO356_16545 0.74 -1.0 3,737,130 + AO356_16545 0.74 -0.8 3,737,130 + AO356_16545 0.74 +0.0 3,737,130 + AO356_16545 0.74 -0.6 3,737,130 + AO356_16545 0.74 -0.2 3,737,131 - AO356_16545 0.74 +0.2 3,737,131 - AO356_16545 0.74 +0.0 3,737,217 + AO356_16545 0.83 -0.9 3,737,217 + AO356_16545 0.83 -2.2 3,737,217 + AO356_16545 0.83 +0.3 3,737,218 - AO356_16545 0.83 -2.3 3,737,218 - AO356_16545 0.83 -0.6 3,737,218 - AO356_16545 0.83 +0.0 3,737,218 - AO356_16545 0.83 -1.4
Or see this region's nucleotide sequence