Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14265

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14260 and AO356_14265 are separated by 126 nucleotidesAO356_14265 and AO356_14270 are separated by 67 nucleotides AO356_14260: AO356_14260 - diguanylate cyclase, at 3,239,719 to 3,243,462 _14260 AO356_14265: AO356_14265 - RNA polymerase subunit sigma-70, at 3,243,589 to 3,245,436 _14265 AO356_14270: AO356_14270 - DNA primase, at 3,245,504 to 3,247,462 _14270 Position (kb) 3243 3244 3245 3246Strain fitness (log2 ratio) -2 -1 0 1 2at 3242.620 kb on + strand, within AO356_14260at 3242.655 kb on - strand, within AO356_14260at 3242.662 kb on + strand, within AO356_14260at 3242.663 kb on - strand, within AO356_14260at 3242.663 kb on - strand, within AO356_14260at 3242.663 kb on - strand, within AO356_14260at 3242.663 kb on - strand, within AO356_14260at 3242.684 kb on + strand, within AO356_14260at 3242.685 kb on - strand, within AO356_14260at 3242.776 kb on + strand, within AO356_14260at 3242.776 kb on + strand, within AO356_14260at 3242.776 kb on + strand, within AO356_14260at 3242.776 kb on + strand, within AO356_14260at 3242.776 kb on + strand, within AO356_14260at 3242.777 kb on - strand, within AO356_14260at 3242.777 kb on - strand, within AO356_14260at 3242.777 kb on - strand, within AO356_14260at 3242.777 kb on - strand, within AO356_14260at 3242.813 kb on + strand, within AO356_14260at 3242.819 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.840 kb on + strand, within AO356_14260at 3242.841 kb on - strand, within AO356_14260at 3242.950 kb on - strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.008 kb on + strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.009 kb on - strand, within AO356_14260at 3243.038 kb on + strand, within AO356_14260at 3243.038 kb on + strand, within AO356_14260at 3243.038 kb on + strand, within AO356_14260at 3243.038 kb on + strand, within AO356_14260at 3243.038 kb on + strand, within AO356_14260at 3243.038 kb on + strand, within AO356_14260at 3243.039 kb on - strand, within AO356_14260at 3243.039 kb on - strand, within AO356_14260at 3243.039 kb on - strand, within AO356_14260at 3243.074 kb on + strand, within AO356_14260at 3243.075 kb on - strand, within AO356_14260at 3243.075 kb on - strand, within AO356_14260at 3243.075 kb on - strand, within AO356_14260at 3243.118 kb on - strandat 3243.128 kb on + strandat 3243.128 kb on + strandat 3243.129 kb on - strandat 3243.129 kb on - strandat 3243.166 kb on + strandat 3243.166 kb on + strandat 3243.166 kb on + strandat 3243.166 kb on + strandat 3243.167 kb on - strandat 3243.167 kb on - strandat 3243.199 kb on + strandat 3243.269 kb on + strandat 3243.269 kb on + strandat 3243.269 kb on + strandat 3243.269 kb on + strandat 3243.269 kb on + strandat 3243.270 kb on - strandat 3243.270 kb on - strandat 3243.290 kb on + strandat 3243.501 kb on + strandat 3243.501 kb on + strandat 3243.501 kb on + strandat 3243.501 kb on + strandat 3243.502 kb on - strandat 3243.543 kb on + strandat 3243.543 kb on + strandat 3243.543 kb on + strandat 3243.543 kb on + strandat 3243.544 kb on - strandat 3243.554 kb on - strandat 3243.554 kb on - strandat 3245.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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3,242,620 + AO356_14260 0.77 -0.2
3,242,655 - AO356_14260 0.78 +0.5
3,242,662 + AO356_14260 0.79 +1.0
3,242,663 - AO356_14260 0.79 +0.7
3,242,663 - AO356_14260 0.79 +1.4
3,242,663 - AO356_14260 0.79 +0.2
3,242,663 - AO356_14260 0.79 +0.2
3,242,684 + AO356_14260 0.79 -0.9
3,242,685 - AO356_14260 0.79 +1.0
3,242,776 + AO356_14260 0.82 +1.0
3,242,776 + AO356_14260 0.82 -1.2
3,242,776 + AO356_14260 0.82 -0.6
3,242,776 + AO356_14260 0.82 +0.5
3,242,776 + AO356_14260 0.82 +0.5
3,242,777 - AO356_14260 0.82 -0.4
3,242,777 - AO356_14260 0.82 +0.3
3,242,777 - AO356_14260 0.82 +0.6
3,242,777 - AO356_14260 0.82 +0.6
3,242,813 + AO356_14260 0.83 -0.7
3,242,819 + AO356_14260 0.83 +0.7
3,242,840 + AO356_14260 0.83 -0.7
3,242,840 + AO356_14260 0.83 -0.6
3,242,840 + AO356_14260 0.83 -0.4
3,242,840 + AO356_14260 0.83 +0.1
3,242,840 + AO356_14260 0.83 -1.0
3,242,840 + AO356_14260 0.83 +0.0
3,242,840 + AO356_14260 0.83 +0.7
3,242,840 + AO356_14260 0.83 -0.1
3,242,840 + AO356_14260 0.83 +1.0
3,242,841 - AO356_14260 0.83 -0.2
3,242,950 - AO356_14260 0.86 +0.0
3,243,008 + AO356_14260 0.88 +0.8
3,243,008 + AO356_14260 0.88 +0.7
3,243,008 + AO356_14260 0.88 +0.3
3,243,008 + AO356_14260 0.88 -0.9
3,243,008 + AO356_14260 0.88 -0.6
3,243,008 + AO356_14260 0.88 -0.5
3,243,008 + AO356_14260 0.88 -0.2
3,243,008 + AO356_14260 0.88 -1.1
3,243,008 + AO356_14260 0.88 -0.7
3,243,008 + AO356_14260 0.88 -0.5
3,243,009 - AO356_14260 0.88 -0.8
3,243,009 - AO356_14260 0.88 -2.7
3,243,009 - AO356_14260 0.88 +1.0
3,243,009 - AO356_14260 0.88 +0.7
3,243,009 - AO356_14260 0.88 +0.7
3,243,009 - AO356_14260 0.88 -1.1
3,243,009 - AO356_14260 0.88 +0.3
3,243,009 - AO356_14260 0.88 +0.9
3,243,009 - AO356_14260 0.88 +0.5
3,243,009 - AO356_14260 0.88 +0.0
3,243,038 + AO356_14260 0.89 -0.1
3,243,038 + AO356_14260 0.89 -0.0
3,243,038 + AO356_14260 0.89 -1.5
3,243,038 + AO356_14260 0.89 -0.6
3,243,038 + AO356_14260 0.89 -0.4
3,243,038 + AO356_14260 0.89 +0.2
3,243,039 - AO356_14260 0.89 -0.3
3,243,039 - AO356_14260 0.89 +0.1
3,243,039 - AO356_14260 0.89 +1.0
3,243,074 + AO356_14260 0.90 -0.1
3,243,075 - AO356_14260 0.90 -0.0
3,243,075 - AO356_14260 0.90 -0.2
3,243,075 - AO356_14260 0.90 -0.1
3,243,118 - +0.6
3,243,128 + +0.8
3,243,128 + -0.2
3,243,129 - +0.3
3,243,129 - +0.8
3,243,166 + +0.6
3,243,166 + +0.9
3,243,166 + +0.8
3,243,166 + +0.3
3,243,167 - -0.4
3,243,167 - -0.6
3,243,199 + -0.3
3,243,269 + +0.7
3,243,269 + -0.6
3,243,269 + +1.2
3,243,269 + -0.2
3,243,269 + +0.1
3,243,270 - +0.5
3,243,270 - +1.6
3,243,290 + -0.8
3,243,501 + +1.5
3,243,501 + +0.8
3,243,501 + -0.4
3,243,501 + +1.2
3,243,502 - +1.9
3,243,543 + +0.4
3,243,543 + -0.3
3,243,543 + -0.1
3,243,543 + +0.5
3,243,544 - +0.8
3,243,554 - +0.4
3,243,554 - +1.0
3,245,489 - -1.9

Or see this region's nucleotide sequence