Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13660

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13650 and AO356_13655 are separated by 48 nucleotidesAO356_13655 and AO356_13660 are separated by 90 nucleotidesAO356_13660 and AO356_13665 are separated by 206 nucleotides AO356_13650: AO356_13650 - cytochrome C, at 3,096,007 to 3,096,456 _13650 AO356_13655: AO356_13655 - hypothetical protein, at 3,096,505 to 3,096,900 _13655 AO356_13660: AO356_13660 - aromatic ring-opening dioxygenase LigA, at 3,096,991 to 3,098,664 _13660 AO356_13665: AO356_13665 - lysine transporter LysE, at 3,098,871 to 3,099,491 _13665 Position (kb) 3096 3097 3098 3099Strain fitness (log2 ratio) -2 -1 0 1at 3096.015 kb on - strandat 3096.373 kb on + strand, within AO356_13650at 3096.374 kb on - strand, within AO356_13650at 3096.374 kb on - strand, within AO356_13650at 3096.374 kb on - strand, within AO356_13650at 3096.374 kb on - strand, within AO356_13650at 3096.374 kb on - strand, within AO356_13650at 3096.385 kb on + strand, within AO356_13650at 3096.385 kb on + strand, within AO356_13650at 3096.385 kb on + strand, within AO356_13650at 3096.385 kb on + strand, within AO356_13650at 3096.385 kb on + strand, within AO356_13650at 3096.386 kb on - strand, within AO356_13650at 3096.435 kb on + strandat 3096.435 kb on + strandat 3096.435 kb on + strandat 3096.435 kb on + strandat 3096.451 kb on + strandat 3096.451 kb on + strandat 3096.452 kb on - strandat 3096.452 kb on - strandat 3096.452 kb on - strandat 3096.452 kb on - strandat 3096.492 kb on - strandat 3096.492 kb on - strandat 3096.492 kb on - strandat 3096.510 kb on + strandat 3096.510 kb on + strandat 3096.510 kb on + strandat 3096.511 kb on - strandat 3096.655 kb on + strand, within AO356_13655at 3096.655 kb on + strand, within AO356_13655at 3096.655 kb on + strand, within AO356_13655at 3096.655 kb on + strand, within AO356_13655at 3096.655 kb on + strand, within AO356_13655at 3096.656 kb on - strand, within AO356_13655at 3096.656 kb on - strand, within AO356_13655at 3096.656 kb on - strand, within AO356_13655at 3096.656 kb on - strand, within AO356_13655at 3096.656 kb on - strand, within AO356_13655at 3096.865 kb on + strandat 3096.865 kb on + strandat 3096.865 kb on + strandat 3096.866 kb on - strandat 3096.866 kb on - strandat 3096.866 kb on - strandat 3096.866 kb on - strandat 3096.900 kb on + strandat 3096.900 kb on + strandat 3096.932 kb on + strandat 3096.933 kb on - strandat 3096.992 kb on + strandat 3097.018 kb on + strandat 3097.018 kb on + strandat 3097.018 kb on + strandat 3097.018 kb on + strandat 3097.018 kb on + strandat 3097.018 kb on + strandat 3097.018 kb on + strandat 3097.019 kb on - strandat 3097.019 kb on - strandat 3097.019 kb on - strandat 3097.019 kb on - strandat 3097.019 kb on - strandat 3097.019 kb on - strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.021 kb on + strandat 3097.022 kb on - strandat 3097.022 kb on - strandat 3097.022 kb on - strandat 3097.022 kb on - strandat 3097.022 kb on - strandat 3097.022 kb on - strandat 3097.022 kb on - strandat 3097.022 kb on - strandat 3097.251 kb on + strand, within AO356_13660at 3097.251 kb on + strand, within AO356_13660at 3097.279 kb on - strand, within AO356_13660at 3097.279 kb on - strand, within AO356_13660at 3097.742 kb on + strand, within AO356_13660at 3097.742 kb on + strand, within AO356_13660at 3097.742 kb on + strand, within AO356_13660at 3097.743 kb on - strand, within AO356_13660at 3097.743 kb on - strand, within AO356_13660at 3097.743 kb on - strand, within AO356_13660at 3097.743 kb on - strand, within AO356_13660at 3097.743 kb on - strand, within AO356_13660at 3097.743 kb on - strand, within AO356_13660at 3097.743 kb on - strand, within AO356_13660at 3097.748 kb on + strand, within AO356_13660at 3097.748 kb on + strand, within AO356_13660at 3097.749 kb on - strand, within AO356_13660at 3097.749 kb on - strand, within AO356_13660at 3097.749 kb on - strand, within AO356_13660at 3097.913 kb on + strand, within AO356_13660at 3097.913 kb on + strand, within AO356_13660at 3097.914 kb on - strand, within AO356_13660at 3098.120 kb on + strand, within AO356_13660at 3098.120 kb on + strand, within AO356_13660at 3098.120 kb on + strand, within AO356_13660at 3098.121 kb on - strand, within AO356_13660at 3098.121 kb on - strand, within AO356_13660at 3098.121 kb on - strand, within AO356_13660at 3098.480 kb on + strand, within AO356_13660at 3098.480 kb on + strand, within AO356_13660at 3098.480 kb on + strand, within AO356_13660at 3098.481 kb on - strand, within AO356_13660at 3098.481 kb on - strand, within AO356_13660at 3098.481 kb on - strand, within AO356_13660at 3098.481 kb on - strand, within AO356_13660at 3098.481 kb on - strand, within AO356_13660at 3098.481 kb on - strand, within AO356_13660at 3098.630 kb on - strandat 3098.630 kb on - strandat 3098.648 kb on + strandat 3098.649 kb on - strandat 3098.649 kb on - strandat 3098.649 kb on - strandat 3098.649 kb on - strandat 3098.649 kb on - strandat 3098.688 kb on + strandat 3098.700 kb on - strandat 3099.123 kb on + strand, within AO356_13665at 3099.123 kb on + strand, within AO356_13665at 3099.124 kb on - strand, within AO356_13665at 3099.124 kb on - strand, within AO356_13665at 3099.124 kb on - strand, within AO356_13665at 3099.124 kb on - strand, within AO356_13665at 3099.124 kb on - strand, within AO356_13665at 3099.139 kb on + strand, within AO356_13665at 3099.139 kb on + strand, within AO356_13665at 3099.140 kb on - strand, within AO356_13665at 3099.140 kb on - strand, within AO356_13665at 3099.233 kb on + strand, within AO356_13665at 3099.287 kb on + strand, within AO356_13665at 3099.287 kb on + strand, within AO356_13665at 3099.287 kb on + strand, within AO356_13665at 3099.294 kb on - strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.363 kb on + strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.364 kb on - strand, within AO356_13665at 3099.369 kb on + strand, within AO356_13665at 3099.369 kb on + strand, within AO356_13665at 3099.369 kb on + strand, within AO356_13665at 3099.369 kb on + strand, within AO356_13665at 3099.369 kb on + strand, within AO356_13665at 3099.370 kb on - strand, within AO356_13665at 3099.370 kb on - strand, within AO356_13665at 3099.370 kb on - strand, within AO356_13665at 3099.370 kb on - strand, within AO356_13665at 3099.370 kb on - strand, within AO356_13665at 3099.370 kb on - strand, within AO356_13665at 3099.370 kb on - strand, within AO356_13665at 3099.381 kb on + strand, within AO356_13665at 3099.382 kb on - strand, within AO356_13665at 3099.382 kb on - strand, within AO356_13665at 3099.537 kb on - strandat 3099.601 kb on + strandat 3099.601 kb on + strandat 3099.602 kb on - strandat 3099.602 kb on - strandat 3099.646 kb on + strandat 3099.646 kb on + strandat 3099.646 kb on + strandat 3099.646 kb on + strandat 3099.647 kb on - strandat 3099.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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3,096,015 - -0.5
3,096,373 + AO356_13650 0.81 -0.1
3,096,374 - AO356_13650 0.82 -0.4
3,096,374 - AO356_13650 0.82 -0.4
3,096,374 - AO356_13650 0.82 -0.2
3,096,374 - AO356_13650 0.82 +0.3
3,096,374 - AO356_13650 0.82 +0.1
3,096,385 + AO356_13650 0.84 +0.0
3,096,385 + AO356_13650 0.84 -0.6
3,096,385 + AO356_13650 0.84 -1.0
3,096,385 + AO356_13650 0.84 -1.0
3,096,385 + AO356_13650 0.84 -1.7
3,096,386 - AO356_13650 0.84 +0.5
3,096,435 + -0.3
3,096,435 + -2.6
3,096,435 + -0.5
3,096,435 + +0.2
3,096,451 + +0.2
3,096,451 + -0.5
3,096,452 - -0.7
3,096,452 - -1.1
3,096,452 - -1.6
3,096,452 - +1.1
3,096,492 - +0.2
3,096,492 - -0.2
3,096,492 - +0.9
3,096,510 + -0.2
3,096,510 + -1.9
3,096,510 + -0.1
3,096,511 - +0.1
3,096,655 + AO356_13655 0.38 -1.6
3,096,655 + AO356_13655 0.38 +0.2
3,096,655 + AO356_13655 0.38 +0.1
3,096,655 + AO356_13655 0.38 -0.9
3,096,655 + AO356_13655 0.38 +0.6
3,096,656 - AO356_13655 0.38 +0.0
3,096,656 - AO356_13655 0.38 +0.2
3,096,656 - AO356_13655 0.38 +0.1
3,096,656 - AO356_13655 0.38 -1.3
3,096,656 - AO356_13655 0.38 -0.3
3,096,865 + +0.2
3,096,865 + -0.9
3,096,865 + +0.1
3,096,866 - -1.0
3,096,866 - -0.1
3,096,866 - +0.3
3,096,866 - -0.5
3,096,900 + -0.3
3,096,900 + +0.5
3,096,932 + +0.3
3,096,933 - +0.2
3,096,992 + -0.1
3,097,018 + +0.9
3,097,018 + -0.1
3,097,018 + +0.4
3,097,018 + -0.6
3,097,018 + +1.4
3,097,018 + -2.2
3,097,018 + -1.0
3,097,019 - +0.3
3,097,019 - +0.1
3,097,019 - +0.3
3,097,019 - +1.7
3,097,019 - +1.0
3,097,019 - -2.0
3,097,021 + -0.4
3,097,021 + -0.9
3,097,021 + -0.8
3,097,021 + -0.5
3,097,021 + -1.1
3,097,021 + +1.1
3,097,021 + -0.1
3,097,021 + +0.2
3,097,021 + -0.2
3,097,021 + -0.3
3,097,022 - -0.2
3,097,022 - -0.2
3,097,022 - +0.6
3,097,022 - +0.0
3,097,022 - +0.2
3,097,022 - -0.9
3,097,022 - -0.4
3,097,022 - +0.3
3,097,251 + AO356_13660 0.16 +0.7
3,097,251 + AO356_13660 0.16 +0.2
3,097,279 - AO356_13660 0.17 +0.1
3,097,279 - AO356_13660 0.17 +0.3
3,097,742 + AO356_13660 0.45 +0.7
3,097,742 + AO356_13660 0.45 +0.1
3,097,742 + AO356_13660 0.45 -1.4
3,097,743 - AO356_13660 0.45 +0.7
3,097,743 - AO356_13660 0.45 -0.6
3,097,743 - AO356_13660 0.45 +0.7
3,097,743 - AO356_13660 0.45 -0.4
3,097,743 - AO356_13660 0.45 -0.8
3,097,743 - AO356_13660 0.45 +0.9
3,097,743 - AO356_13660 0.45 +0.4
3,097,748 + AO356_13660 0.45 -0.5
3,097,748 + AO356_13660 0.45 +0.4
3,097,749 - AO356_13660 0.45 -0.2
3,097,749 - AO356_13660 0.45 +0.7
3,097,749 - AO356_13660 0.45 +0.8
3,097,913 + AO356_13660 0.55 -0.3
3,097,913 + AO356_13660 0.55 +0.3
3,097,914 - AO356_13660 0.55 +0.5
3,098,120 + AO356_13660 0.67 -0.5
3,098,120 + AO356_13660 0.67 -0.0
3,098,120 + AO356_13660 0.67 +0.2
3,098,121 - AO356_13660 0.68 -0.5
3,098,121 - AO356_13660 0.68 +0.7
3,098,121 - AO356_13660 0.68 +0.1
3,098,480 + AO356_13660 0.89 -0.2
3,098,480 + AO356_13660 0.89 +0.8
3,098,480 + AO356_13660 0.89 -0.8
3,098,481 - AO356_13660 0.89 +0.3
3,098,481 - AO356_13660 0.89 +1.2
3,098,481 - AO356_13660 0.89 +0.7
3,098,481 - AO356_13660 0.89 +0.2
3,098,481 - AO356_13660 0.89 -1.6
3,098,481 - AO356_13660 0.89 +0.9
3,098,630 - +0.4
3,098,630 - +0.7
3,098,648 + -0.7
3,098,649 - +0.1
3,098,649 - -0.0
3,098,649 - -0.6
3,098,649 - +0.2
3,098,649 - -0.5
3,098,688 + +0.3
3,098,700 - +0.8
3,099,123 + AO356_13665 0.41 -0.7
3,099,123 + AO356_13665 0.41 +0.6
3,099,124 - AO356_13665 0.41 +1.3
3,099,124 - AO356_13665 0.41 -0.0
3,099,124 - AO356_13665 0.41 +0.7
3,099,124 - AO356_13665 0.41 -0.6
3,099,124 - AO356_13665 0.41 -1.7
3,099,139 + AO356_13665 0.43 -0.1
3,099,139 + AO356_13665 0.43 +1.2
3,099,140 - AO356_13665 0.43 -1.2
3,099,140 - AO356_13665 0.43 -1.1
3,099,233 + AO356_13665 0.58 +0.5
3,099,287 + AO356_13665 0.67 -0.9
3,099,287 + AO356_13665 0.67 -0.2
3,099,287 + AO356_13665 0.67 +0.7
3,099,294 - AO356_13665 0.68 -0.5
3,099,363 + AO356_13665 0.79 -0.1
3,099,363 + AO356_13665 0.79 +1.5
3,099,363 + AO356_13665 0.79 +1.7
3,099,363 + AO356_13665 0.79 -1.1
3,099,363 + AO356_13665 0.79 +0.9
3,099,363 + AO356_13665 0.79 +0.2
3,099,363 + AO356_13665 0.79 -0.5
3,099,363 + AO356_13665 0.79 -1.1
3,099,363 + AO356_13665 0.79 -1.7
3,099,364 - AO356_13665 0.79 -1.1
3,099,364 - AO356_13665 0.79 -1.1
3,099,364 - AO356_13665 0.79 +0.9
3,099,364 - AO356_13665 0.79 -0.5
3,099,364 - AO356_13665 0.79 -1.0
3,099,364 - AO356_13665 0.79 +0.9
3,099,364 - AO356_13665 0.79 +0.3
3,099,364 - AO356_13665 0.79 -0.0
3,099,369 + AO356_13665 0.80 -2.7
3,099,369 + AO356_13665 0.80 +0.1
3,099,369 + AO356_13665 0.80 -0.4
3,099,369 + AO356_13665 0.80 +1.0
3,099,369 + AO356_13665 0.80 +0.1
3,099,370 - AO356_13665 0.80 +0.9
3,099,370 - AO356_13665 0.80 -0.0
3,099,370 - AO356_13665 0.80 +0.2
3,099,370 - AO356_13665 0.80 +1.0
3,099,370 - AO356_13665 0.80 -0.3
3,099,370 - AO356_13665 0.80 +1.4
3,099,370 - AO356_13665 0.80 +0.6
3,099,381 + AO356_13665 0.82 -0.3
3,099,382 - AO356_13665 0.82 -0.3
3,099,382 - AO356_13665 0.82 +0.4
3,099,537 - -0.7
3,099,601 + +1.0
3,099,601 + -0.3
3,099,602 - -0.2
3,099,602 - -0.9
3,099,646 + -1.9
3,099,646 + +0.1
3,099,646 + +0.5
3,099,646 + +0.7
3,099,647 - +0.5
3,099,647 - -0.2

Or see this region's nucleotide sequence