Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11610

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11600 and AO356_11605 are separated by 3 nucleotidesAO356_11605 and AO356_11610 are separated by 80 nucleotidesAO356_11610 and AO356_11615 are separated by 190 nucleotides AO356_11600: AO356_11600 - glycine--tRNA ligase subunit beta, at 2,625,271 to 2,627,325 _11600 AO356_11605: AO356_11605 - histidinol phosphatase, at 2,627,329 to 2,627,862 _11605 AO356_11610: AO356_11610 - glycerol acyltransferase, at 2,627,943 to 2,628,722 _11610 AO356_11615: AO356_11615 - histidine kinase, at 2,628,913 to 2,630,430 _11615 Position (kb) 2627 2628 2629Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2627.860 kb on + strandat 2627.860 kb on + strandat 2627.860 kb on + strandat 2627.942 kb on + strandat 2627.943 kb on - strandat 2628.223 kb on - strand, within AO356_11610at 2628.631 kb on + strand, within AO356_11610at 2628.631 kb on + strand, within AO356_11610at 2628.833 kb on + strandat 2628.841 kb on + strandat 2628.842 kb on - strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.854 kb on + strandat 2628.855 kb on - strandat 2628.855 kb on - strandat 2628.886 kb on + strandat 2628.886 kb on + strandat 2628.887 kb on - strandat 2628.887 kb on - strandat 2628.958 kb on - strandat 2628.970 kb on - strandat 2629.022 kb on - strandat 2629.173 kb on + strand, within AO356_11615at 2629.173 kb on + strand, within AO356_11615at 2629.173 kb on + strand, within AO356_11615at 2629.173 kb on + strand, within AO356_11615at 2629.173 kb on + strand, within AO356_11615at 2629.174 kb on - strand, within AO356_11615at 2629.174 kb on - strand, within AO356_11615at 2629.174 kb on - strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.193 kb on + strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.194 kb on - strand, within AO356_11615at 2629.238 kb on - strand, within AO356_11615at 2629.276 kb on + strand, within AO356_11615at 2629.276 kb on + strand, within AO356_11615at 2629.276 kb on + strand, within AO356_11615at 2629.277 kb on - strand, within AO356_11615at 2629.277 kb on - strand, within AO356_11615at 2629.296 kb on + strand, within AO356_11615at 2629.296 kb on + strand, within AO356_11615at 2629.297 kb on - strand, within AO356_11615at 2629.297 kb on - strand, within AO356_11615at 2629.297 kb on - strand, within AO356_11615at 2629.376 kb on + strand, within AO356_11615at 2629.377 kb on - strand, within AO356_11615at 2629.377 kb on - strand, within AO356_11615at 2629.405 kb on + strand, within AO356_11615at 2629.405 kb on + strand, within AO356_11615at 2629.406 kb on - strand, within AO356_11615at 2629.406 kb on - strand, within AO356_11615at 2629.406 kb on - strand, within AO356_11615at 2629.406 kb on - strand, within AO356_11615at 2629.438 kb on + strand, within AO356_11615at 2629.438 kb on + strand, within AO356_11615at 2629.438 kb on + strand, within AO356_11615at 2629.439 kb on - strand, within AO356_11615at 2629.439 kb on - strand, within AO356_11615at 2629.677 kb on + strand, within AO356_11615at 2629.677 kb on + strand, within AO356_11615at 2629.677 kb on + strand, within AO356_11615at 2629.677 kb on + strand, within AO356_11615at 2629.677 kb on + strand, within AO356_11615at 2629.677 kb on + strand, within AO356_11615at 2629.678 kb on - strand, within AO356_11615at 2629.678 kb on - strand, within AO356_11615at 2629.678 kb on - strand, within AO356_11615at 2629.678 kb on - strand, within AO356_11615

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,627,860 + +1.6
2,627,860 + -1.2
2,627,860 + +0.6
2,627,942 + +0.3
2,627,943 - +1.7
2,628,223 - AO356_11610 0.36 +0.1
2,628,631 + AO356_11610 0.88 -0.9
2,628,631 + AO356_11610 0.88 -0.6
2,628,833 + -2.5
2,628,841 + -0.2
2,628,842 - -0.2
2,628,854 + +0.4
2,628,854 + -0.1
2,628,854 + -0.4
2,628,854 + -0.2
2,628,854 + +1.3
2,628,854 + +1.4
2,628,854 + -0.4
2,628,855 - -0.1
2,628,855 - -0.3
2,628,886 + +1.0
2,628,886 + +0.0
2,628,887 - +0.5
2,628,887 - -2.6
2,628,958 - +2.6
2,628,970 - +1.9
2,629,022 - +2.0
2,629,173 + AO356_11615 0.17 +1.9
2,629,173 + AO356_11615 0.17 +1.3
2,629,173 + AO356_11615 0.17 +1.9
2,629,173 + AO356_11615 0.17 +1.9
2,629,173 + AO356_11615 0.17 +4.0
2,629,174 - AO356_11615 0.17 +2.3
2,629,174 - AO356_11615 0.17 +1.6
2,629,174 - AO356_11615 0.17 +0.6
2,629,193 + AO356_11615 0.18 +1.8
2,629,193 + AO356_11615 0.18 +2.7
2,629,193 + AO356_11615 0.18 +0.7
2,629,193 + AO356_11615 0.18 +1.9
2,629,193 + AO356_11615 0.18 +2.3
2,629,193 + AO356_11615 0.18 +2.4
2,629,193 + AO356_11615 0.18 +2.3
2,629,193 + AO356_11615 0.18 -1.1
2,629,194 - AO356_11615 0.19 +2.1
2,629,194 - AO356_11615 0.19 -0.2
2,629,194 - AO356_11615 0.19 +1.6
2,629,194 - AO356_11615 0.19 +1.2
2,629,194 - AO356_11615 0.19 +0.6
2,629,194 - AO356_11615 0.19 +1.5
2,629,194 - AO356_11615 0.19 +2.2
2,629,194 - AO356_11615 0.19 +1.8
2,629,238 - AO356_11615 0.21 +2.1
2,629,276 + AO356_11615 0.24 +2.2
2,629,276 + AO356_11615 0.24 +1.8
2,629,276 + AO356_11615 0.24 +2.2
2,629,277 - AO356_11615 0.24 +1.7
2,629,277 - AO356_11615 0.24 +2.3
2,629,296 + AO356_11615 0.25 +2.0
2,629,296 + AO356_11615 0.25 +2.0
2,629,297 - AO356_11615 0.25 +1.7
2,629,297 - AO356_11615 0.25 +1.5
2,629,297 - AO356_11615 0.25 +2.2
2,629,376 + AO356_11615 0.31 +2.4
2,629,377 - AO356_11615 0.31 +1.9
2,629,377 - AO356_11615 0.31 +2.1
2,629,405 + AO356_11615 0.32 +2.1
2,629,405 + AO356_11615 0.32 +2.1
2,629,406 - AO356_11615 0.32 +1.7
2,629,406 - AO356_11615 0.32 +2.0
2,629,406 - AO356_11615 0.32 +1.9
2,629,406 - AO356_11615 0.32 +2.0
2,629,438 + AO356_11615 0.35 +2.1
2,629,438 + AO356_11615 0.35 +2.3
2,629,438 + AO356_11615 0.35 +1.8
2,629,439 - AO356_11615 0.35 +1.6
2,629,439 - AO356_11615 0.35 +2.0
2,629,677 + AO356_11615 0.50 +0.6
2,629,677 + AO356_11615 0.50 +2.1
2,629,677 + AO356_11615 0.50 +1.4
2,629,677 + AO356_11615 0.50 +1.8
2,629,677 + AO356_11615 0.50 +1.7
2,629,677 + AO356_11615 0.50 +2.0
2,629,678 - AO356_11615 0.50 +2.0
2,629,678 - AO356_11615 0.50 +0.7
2,629,678 - AO356_11615 0.50 +1.3
2,629,678 - AO356_11615 0.50 +2.1

Or see this region's nucleotide sequence