Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06415

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06410 and AO356_06415 are separated by 195 nucleotidesAO356_06415 and AO356_06420 are separated by 12 nucleotides AO356_06410: AO356_06410 - RNA-binding protein, at 1,418,982 to 1,420,358 _06410 AO356_06415: AO356_06415 - cytochrome C assembly protein, at 1,420,554 to 1,421,366 _06415 AO356_06420: AO356_06420 - transporter, at 1,421,379 to 1,422,620 _06420 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -1 0 1 2 3at 1420.456 kb on - strandat 1420.458 kb on - strandat 1420.477 kb on + strandat 1420.477 kb on + strandat 1420.478 kb on - strandat 1420.478 kb on - strandat 1420.478 kb on - strandat 1420.478 kb on - strandat 1420.512 kb on + strandat 1420.513 kb on - strandat 1420.513 kb on - strandat 1420.513 kb on - strandat 1420.513 kb on - strandat 1420.553 kb on + strandat 1420.553 kb on + strandat 1420.553 kb on + strandat 1420.554 kb on - strandat 1420.554 kb on - strandat 1420.554 kb on - strandat 1420.554 kb on - strandat 1420.554 kb on - strandat 1420.606 kb on - strandat 1420.623 kb on + strandat 1420.623 kb on + strandat 1420.623 kb on + strandat 1420.719 kb on + strand, within AO356_06415at 1420.719 kb on + strand, within AO356_06415at 1420.720 kb on - strand, within AO356_06415at 1420.722 kb on - strand, within AO356_06415at 1420.722 kb on - strand, within AO356_06415at 1421.014 kb on + strand, within AO356_06415at 1421.188 kb on + strand, within AO356_06415at 1421.188 kb on + strand, within AO356_06415at 1421.188 kb on + strand, within AO356_06415at 1421.189 kb on - strand, within AO356_06415at 1421.189 kb on - strand, within AO356_06415at 1421.323 kb on - strandat 1421.349 kb on + strandat 1421.349 kb on + strandat 1421.349 kb on + strandat 1421.349 kb on + strandat 1421.349 kb on + strandat 1421.350 kb on - strandat 1421.350 kb on - strandat 1421.350 kb on - strandat 1421.350 kb on - strandat 1421.360 kb on + strandat 1421.361 kb on - strandat 1421.361 kb on - strandat 1421.384 kb on + strandat 1421.384 kb on + strandat 1421.384 kb on + strandat 1421.384 kb on + strandat 1421.384 kb on + strandat 1421.384 kb on + strandat 1421.385 kb on - strandat 1421.385 kb on - strandat 1421.385 kb on - strandat 1421.562 kb on - strand, within AO356_06420at 1421.613 kb on - strand, within AO356_06420at 1421.613 kb on - strand, within AO356_06420at 1421.683 kb on - strand, within AO356_06420at 1421.769 kb on + strand, within AO356_06420at 1421.770 kb on - strand, within AO356_06420at 1421.770 kb on - strand, within AO356_06420at 1422.180 kb on + strand, within AO356_06420at 1422.180 kb on + strand, within AO356_06420at 1422.180 kb on + strand, within AO356_06420at 1422.180 kb on + strand, within AO356_06420at 1422.181 kb on - strand, within AO356_06420at 1422.181 kb on - strand, within AO356_06420at 1422.181 kb on - strand, within AO356_06420at 1422.267 kb on + strand, within AO356_06420at 1422.268 kb on - strand, within AO356_06420at 1422.268 kb on - strand, within AO356_06420at 1422.277 kb on + strand, within AO356_06420at 1422.277 kb on + strand, within AO356_06420at 1422.278 kb on - strand, within AO356_06420

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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1,420,456 - -1.0
1,420,458 - -0.4
1,420,477 + -1.2
1,420,477 + +0.2
1,420,478 - +0.7
1,420,478 - +0.2
1,420,478 - +0.7
1,420,478 - +0.2
1,420,512 + +1.9
1,420,513 - +1.4
1,420,513 - +1.8
1,420,513 - +1.7
1,420,513 - +3.3
1,420,553 + +2.8
1,420,553 + +1.7
1,420,553 + +2.1
1,420,554 - +2.8
1,420,554 - +1.2
1,420,554 - +3.7
1,420,554 - +3.3
1,420,554 - +2.1
1,420,606 - +1.7
1,420,623 + +2.3
1,420,623 + +1.7
1,420,623 + +1.8
1,420,719 + AO356_06415 0.20 +2.3
1,420,719 + AO356_06415 0.20 +2.0
1,420,720 - AO356_06415 0.20 +2.5
1,420,722 - AO356_06415 0.21 +3.2
1,420,722 - AO356_06415 0.21 +3.0
1,421,014 + AO356_06415 0.57 +1.8
1,421,188 + AO356_06415 0.78 -0.2
1,421,188 + AO356_06415 0.78 -0.2
1,421,188 + AO356_06415 0.78 +1.5
1,421,189 - AO356_06415 0.78 +3.0
1,421,189 - AO356_06415 0.78 +2.0
1,421,323 - +3.3
1,421,349 + -0.5
1,421,349 + -0.5
1,421,349 + +0.5
1,421,349 + +1.1
1,421,349 + +1.3
1,421,350 - +2.0
1,421,350 - +2.0
1,421,350 - +3.2
1,421,350 - +3.7
1,421,360 + +1.4
1,421,361 - +2.3
1,421,361 - +2.7
1,421,384 + +1.0
1,421,384 + +1.4
1,421,384 + +2.3
1,421,384 + +1.4
1,421,384 + +1.6
1,421,384 + +2.1
1,421,385 - +2.4
1,421,385 - +1.7
1,421,385 - +2.8
1,421,562 - AO356_06420 0.15 +2.6
1,421,613 - AO356_06420 0.19 +2.9
1,421,613 - AO356_06420 0.19 +3.0
1,421,683 - AO356_06420 0.24 +2.2
1,421,769 + AO356_06420 0.31 +2.0
1,421,770 - AO356_06420 0.31 +2.8
1,421,770 - AO356_06420 0.31 +2.1
1,422,180 + AO356_06420 0.64 +1.8
1,422,180 + AO356_06420 0.64 +2.4
1,422,180 + AO356_06420 0.64 +2.3
1,422,180 + AO356_06420 0.64 +1.8
1,422,181 - AO356_06420 0.65 +2.3
1,422,181 - AO356_06420 0.65 +2.1
1,422,181 - AO356_06420 0.65 +2.1
1,422,267 + AO356_06420 0.71 +2.1
1,422,268 - AO356_06420 0.72 +2.1
1,422,268 - AO356_06420 0.72 +2.2
1,422,277 + AO356_06420 0.72 +2.3
1,422,277 + AO356_06420 0.72 +3.1
1,422,278 - AO356_06420 0.72 +1.0

Or see this region's nucleotide sequence