Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01775

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01760 and AO356_01765 are separated by 58 nucleotidesAO356_01765 and AO356_01770 are separated by 41 nucleotidesAO356_01770 and AO356_01775 are separated by 281 nucleotidesAO356_01775 and AO356_01780 are separated by 331 nucleotides AO356_01760: AO356_01760 - tRNA-Leu, at 398,235 to 398,319 _01760 AO356_01765: AO356_01765 - tRNA-His, at 398,378 to 398,453 _01765 AO356_01770: AO356_01770 - tRNA-Arg, at 398,495 to 398,571 _01770 AO356_01775: AO356_01775 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 398,853 to 399,707 _01775 AO356_01780: AO356_01780 - D-alanyl-D-alanine endopeptidase, at 400,039 to 400,977 _01780 Position (kb) 398 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 397.878 kb on + strandat 397.878 kb on + strandat 397.878 kb on + strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.881 kb on + strandat 397.881 kb on + strandat 397.882 kb on - strandat 397.906 kb on - strandat 397.906 kb on - strandat 397.978 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.019 kb on - strandat 398.019 kb on - strandat 398.019 kb on - strandat 398.019 kb on - strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.078 kb on + strandat 398.078 kb on + strandat 398.197 kb on + strandat 398.220 kb on - strandat 398.233 kb on + strandat 398.233 kb on + strandat 398.233 kb on + strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.355 kb on - strandat 398.355 kb on - strandat 398.372 kb on - strandat 398.473 kb on - strandat 398.606 kb on - strandat 399.701 kb on + strandat 399.701 kb on + strandat 399.701 kb on + strandat 399.702 kb on - strandat 399.868 kb on - strandat 399.868 kb on - strandat 399.908 kb on + strandat 399.915 kb on + strandat 399.915 kb on + strandat 399.916 kb on - strandat 399.920 kb on - strandat 399.920 kb on - strandat 399.920 kb on - strandat 399.938 kb on + strandat 399.946 kb on + strandat 399.946 kb on + strandat 399.946 kb on + strandat 399.946 kb on + strandat 399.946 kb on + strandat 399.946 kb on + strandat 399.946 kb on + strandat 399.946 kb on + strandat 399.947 kb on - strandat 399.947 kb on - strandat 399.947 kb on - strandat 399.948 kb on + strandat 399.948 kb on + strandat 399.949 kb on - strandat 399.949 kb on - strandat 399.966 kb on + strandat 399.967 kb on - strandat 399.967 kb on - strandat 399.967 kb on - strandat 399.972 kb on + strandat 399.972 kb on + strandat 399.972 kb on + strandat 399.973 kb on - strandat 399.973 kb on - strandat 399.991 kb on + strandat 400.032 kb on + strandat 400.197 kb on + strand, within AO356_01780at 400.303 kb on + strand, within AO356_01780at 400.303 kb on + strand, within AO356_01780at 400.303 kb on + strand, within AO356_01780at 400.304 kb on - strand, within AO356_01780at 400.304 kb on - strand, within AO356_01780at 400.391 kb on + strand, within AO356_01780at 400.391 kb on + strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.525 kb on + strand, within AO356_01780at 400.525 kb on + strand, within AO356_01780at 400.526 kb on - strand, within AO356_01780at 400.606 kb on + strand, within AO356_01780at 400.606 kb on + strand, within AO356_01780at 400.630 kb on - strand, within AO356_01780at 400.669 kb on + strand, within AO356_01780at 400.669 kb on + strand, within AO356_01780at 400.670 kb on - strand, within AO356_01780at 400.670 kb on - strand, within AO356_01780

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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397,878 + -1.7
397,878 + +2.3
397,878 + +0.7
397,879 - -0.7
397,879 - +0.3
397,879 - +0.6
397,879 - -1.5
397,879 - -0.1
397,881 + -0.5
397,881 + +0.1
397,882 - +1.1
397,906 - -0.6
397,906 - -0.1
397,978 + -0.6
398,016 + -0.3
398,016 + -0.3
398,016 + +0.5
398,016 + +0.9
398,016 + -2.9
398,016 + +0.0
398,016 + +0.3
398,016 + -0.5
398,017 - +0.4
398,017 - -0.9
398,017 - +0.2
398,017 - +1.3
398,017 - -0.1
398,018 + -0.4
398,018 + -1.3
398,018 + +0.3
398,018 + -0.9
398,018 + +0.4
398,018 + -0.8
398,018 + +0.6
398,018 + +0.3
398,019 - -0.4
398,019 - +0.4
398,019 - -0.6
398,019 - +0.5
398,020 + +0.4
398,020 + +1.3
398,020 + -0.6
398,020 + +0.1
398,020 + +0.7
398,021 - -0.0
398,021 - +0.3
398,021 - +0.8
398,021 - +1.9
398,021 - +0.6
398,021 - +1.9
398,021 - +1.6
398,021 - -0.2
398,021 - +0.3
398,021 - +0.8
398,022 + -0.5
398,022 + +0.8
398,022 + -0.8
398,022 + -0.1
398,022 + -0.9
398,022 + -0.3
398,023 - -0.3
398,023 - +0.4
398,023 - -0.1
398,023 - +0.6
398,023 - +0.2
398,023 - +0.2
398,023 - +0.3
398,023 - -0.6
398,023 - +0.7
398,078 + -0.2
398,078 + +0.6
398,197 + +0.0
398,220 - +0.9
398,233 + +0.3
398,233 + -0.9
398,233 + +1.3
398,234 - +0.9
398,234 - -0.3
398,234 - +0.2
398,234 - +0.6
398,234 - -0.4
398,355 - -0.2
398,355 - -1.7
398,372 - +0.8
398,473 - -0.3
398,606 - +0.3
399,701 + -2.8
399,701 + +1.3
399,701 + -0.6
399,702 - -0.1
399,868 - -1.3
399,868 - -0.6
399,908 + +1.0
399,915 + +3.3
399,915 + -0.0
399,916 - -0.8
399,920 - -0.8
399,920 - +0.6
399,920 - +0.1
399,938 + +0.7
399,946 + +0.6
399,946 + +1.1
399,946 + +0.8
399,946 + +1.4
399,946 + +1.3
399,946 + -0.5
399,946 + -0.1
399,946 + +0.5
399,947 - +0.1
399,947 - -0.7
399,947 - +0.2
399,948 + +0.2
399,948 + +1.2
399,949 - -1.3
399,949 - +0.5
399,966 + -2.1
399,967 - +0.6
399,967 - -0.8
399,967 - +0.8
399,972 + +1.3
399,972 + -0.2
399,972 + -0.9
399,973 - -0.3
399,973 - -0.1
399,991 + -0.1
400,032 + -0.1
400,197 + AO356_01780 0.17 -0.7
400,303 + AO356_01780 0.28 -0.8
400,303 + AO356_01780 0.28 +0.1
400,303 + AO356_01780 0.28 +0.7
400,304 - AO356_01780 0.28 -0.4
400,304 - AO356_01780 0.28 -0.3
400,391 + AO356_01780 0.37 +1.5
400,391 + AO356_01780 0.37 -0.1
400,392 - AO356_01780 0.38 -0.5
400,392 - AO356_01780 0.38 +0.8
400,392 - AO356_01780 0.38 -0.4
400,392 - AO356_01780 0.38 +0.3
400,525 + AO356_01780 0.52 -0.0
400,525 + AO356_01780 0.52 +0.8
400,526 - AO356_01780 0.52 +1.2
400,606 + AO356_01780 0.60 -0.0
400,606 + AO356_01780 0.60 -0.3
400,630 - AO356_01780 0.63 -2.1
400,669 + AO356_01780 0.67 -0.4
400,669 + AO356_01780 0.67 -1.5
400,670 - AO356_01780 0.67 -0.0
400,670 - AO356_01780 0.67 -0.1

Or see this region's nucleotide sequence