Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01720

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01715 and AO356_01720 are separated by 279 nucleotidesAO356_01720 and AO356_01725 are separated by 344 nucleotides AO356_01715: AO356_01715 - AraC family transcriptional regulator, at 386,745 to 387,782 _01715 AO356_01720: AO356_01720 - hypothetical protein, at 388,062 to 388,955 _01720 AO356_01725: AO356_01725 - peptidylprolyl isomerase, at 389,300 to 391,171 _01725 Position (kb) 388 389Strain fitness (log2 ratio) -2 -1 0 1 2at 387.078 kb on + strand, within AO356_01715at 387.078 kb on + strand, within AO356_01715at 387.079 kb on - strand, within AO356_01715at 387.079 kb on - strand, within AO356_01715at 387.090 kb on + strand, within AO356_01715at 387.091 kb on - strand, within AO356_01715at 387.144 kb on + strand, within AO356_01715at 387.145 kb on - strand, within AO356_01715at 387.145 kb on - strand, within AO356_01715at 387.160 kb on - strand, within AO356_01715at 387.160 kb on - strand, within AO356_01715at 387.161 kb on + strand, within AO356_01715at 387.169 kb on - strand, within AO356_01715at 387.282 kb on + strand, within AO356_01715at 387.295 kb on - strand, within AO356_01715at 387.410 kb on + strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.643 kb on - strand, within AO356_01715at 387.643 kb on - strand, within AO356_01715at 387.643 kb on - strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.647 kb on - strand, within AO356_01715at 387.647 kb on - strand, within AO356_01715at 387.647 kb on - strand, within AO356_01715at 387.681 kb on + strandat 387.765 kb on - strandat 387.807 kb on + strandat 387.807 kb on + strandat 387.807 kb on + strandat 387.852 kb on + strandat 387.853 kb on - strandat 387.853 kb on - strandat 387.861 kb on + strandat 387.893 kb on + strandat 387.893 kb on + strandat 387.893 kb on + strandat 387.893 kb on + strandat 387.893 kb on + strandat 387.894 kb on - strandat 387.894 kb on - strandat 387.894 kb on - strandat 387.894 kb on - strandat 387.912 kb on - strandat 387.947 kb on + strandat 387.947 kb on + strandat 387.947 kb on + strandat 387.948 kb on - strandat 387.958 kb on + strandat 387.958 kb on + strandat 387.958 kb on + strandat 387.958 kb on + strandat 387.992 kb on + strandat 387.999 kb on - strandat 388.471 kb on + strand, within AO356_01720at 388.471 kb on + strand, within AO356_01720at 388.471 kb on + strand, within AO356_01720at 388.471 kb on + strand, within AO356_01720at 388.472 kb on - strand, within AO356_01720at 388.472 kb on - strand, within AO356_01720at 388.472 kb on - strand, within AO356_01720at 388.472 kb on - strand, within AO356_01720at 388.472 kb on - strand, within AO356_01720at 388.762 kb on + strand, within AO356_01720at 388.763 kb on - strand, within AO356_01720at 388.763 kb on - strand, within AO356_01720at 388.822 kb on + strand, within AO356_01720at 388.868 kb on - strandat 388.868 kb on - strandat 388.986 kb on + strandat 388.986 kb on + strandat 389.123 kb on + strandat 389.180 kb on + strandat 389.180 kb on + strandat 389.181 kb on - strandat 389.181 kb on - strandat 389.181 kb on - strandat 389.383 kb on - strandat 389.383 kb on - strandat 389.629 kb on + strand, within AO356_01725

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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387,078 + AO356_01715 0.32 -0.1
387,078 + AO356_01715 0.32 +0.6
387,079 - AO356_01715 0.32 +0.6
387,079 - AO356_01715 0.32 -1.1
387,090 + AO356_01715 0.33 +0.6
387,091 - AO356_01715 0.33 -1.3
387,144 + AO356_01715 0.38 +0.6
387,145 - AO356_01715 0.39 -0.8
387,145 - AO356_01715 0.39 +0.4
387,160 - AO356_01715 0.40 +0.4
387,160 - AO356_01715 0.40 -0.3
387,161 + AO356_01715 0.40 -0.3
387,169 - AO356_01715 0.41 +0.3
387,282 + AO356_01715 0.52 +0.5
387,295 - AO356_01715 0.53 +0.1
387,410 + AO356_01715 0.64 +0.4
387,411 - AO356_01715 0.64 +0.6
387,411 - AO356_01715 0.64 +0.1
387,411 - AO356_01715 0.64 +0.6
387,411 - AO356_01715 0.64 -0.5
387,642 + AO356_01715 0.86 -0.3
387,642 + AO356_01715 0.86 +1.2
387,642 + AO356_01715 0.86 -0.8
387,642 + AO356_01715 0.86 -0.2
387,642 + AO356_01715 0.86 -0.1
387,643 - AO356_01715 0.87 -0.9
387,643 - AO356_01715 0.87 +0.1
387,643 - AO356_01715 0.87 -2.0
387,646 + AO356_01715 0.87 +0.2
387,646 + AO356_01715 0.87 +0.6
387,646 + AO356_01715 0.87 +0.2
387,646 + AO356_01715 0.87 -0.9
387,647 - AO356_01715 0.87 -0.3
387,647 - AO356_01715 0.87 +0.6
387,647 - AO356_01715 0.87 -1.7
387,681 + +1.2
387,765 - -0.6
387,807 + +0.1
387,807 + -0.5
387,807 + -0.2
387,852 + -1.1
387,853 - +1.9
387,853 - +0.6
387,861 + +0.4
387,893 + -0.6
387,893 + +0.2
387,893 + -0.4
387,893 + -0.5
387,893 + -0.4
387,894 - +0.6
387,894 - -0.5
387,894 - +1.2
387,894 - +0.0
387,912 - +0.1
387,947 + -0.4
387,947 + -0.1
387,947 + -0.7
387,948 - +0.5
387,958 + +1.7
387,958 + +1.2
387,958 + +0.5
387,958 + +0.9
387,992 + +0.0
387,999 - +0.2
388,471 + AO356_01720 0.46 -1.1
388,471 + AO356_01720 0.46 -0.7
388,471 + AO356_01720 0.46 +0.8
388,471 + AO356_01720 0.46 -0.3
388,472 - AO356_01720 0.46 +0.7
388,472 - AO356_01720 0.46 +0.6
388,472 - AO356_01720 0.46 +1.2
388,472 - AO356_01720 0.46 +0.7
388,472 - AO356_01720 0.46 -0.7
388,762 + AO356_01720 0.78 -0.3
388,763 - AO356_01720 0.78 +1.3
388,763 - AO356_01720 0.78 +0.8
388,822 + AO356_01720 0.85 -0.2
388,868 - +0.2
388,868 - -0.5
388,986 + +2.2
388,986 + +0.9
389,123 + -0.7
389,180 + +0.6
389,180 + +1.1
389,181 - +0.8
389,181 - -0.1
389,181 - +1.7
389,383 - +0.9
389,383 - +0.5
389,629 + AO356_01725 0.18 -0.7

Or see this region's nucleotide sequence