Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS15860 and RALBFv3_RS15865 are separated by 4 nucleotides RALBFv3_RS15865 and RALBFv3_RS15870 are separated by 337 nucleotides RALBFv3_RS15870 and RALBFv3_RS15875 are separated by 93 nucleotides
RALBFv3_RS15860: RALBFv3_RS15860 - UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 3,452,854 to 3,454,524
_RS15860
RALBFv3_RS15865: RALBFv3_RS15865 - hypothetical protein, at 3,454,529 to 3,454,909
_RS15865
RALBFv3_RS15870: RALBFv3_RS15870 - pyridoxal phosphate-dependent aminotransferase, at 3,455,247 to 3,456,488
_RS15870
RALBFv3_RS15875: RALBFv3_RS15875 - homoserine dehydrogenase, at 3,456,582 to 3,457,901
_RS15875
Position (kb) 3455
3456
3457 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3454.591 kb on - strand, within RALBFv3_RS15865 at 3454.782 kb on - strand, within RALBFv3_RS15865 at 3455.078 kb on + strand at 3455.213 kb on + strand at 3455.213 kb on + strand at 3456.243 kb on + strand, within RALBFv3_RS15870 at 3456.243 kb on + strand, within RALBFv3_RS15870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 3,454,591 - RALBFv3_RS15865 0.16 -1.1 3,454,782 - RALBFv3_RS15865 0.66 -1.0 3,455,078 + -0.5 3,455,213 + -0.4 3,455,213 + +0.0 3,456,243 + RALBFv3_RS15870 0.80 -3.4 3,456,243 + RALBFv3_RS15870 0.80 -2.1
Or see this region's nucleotide sequence