Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS15210 and RALBFv3_RS15215 are separated by 77 nucleotides RALBFv3_RS15215 and RALBFv3_RS15220 are separated by 190 nucleotides RALBFv3_RS15220 and RALBFv3_RS15225 are separated by 15 nucleotides
RALBFv3_RS15210: RALBFv3_RS15210 - alkene reductase, at 3,312,453 to 3,313,559
_RS15210
RALBFv3_RS15215: RALBFv3_RS15215 - NADPH:quinone oxidoreductase family protein, at 3,313,637 to 3,314,611
_RS15215
RALBFv3_RS15220: RALBFv3_RS15220 - 5'/3'-nucleotidase SurE, at 3,314,802 to 3,315,557
_RS15220
RALBFv3_RS15225: RALBFv3_RS15225 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 3,315,573 to 3,316,499
_RS15225
Position (kb) 3313
3314
3315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3312.675 kb on + strand, within RALBFv3_RS15210 at 3312.676 kb on - strand, within RALBFv3_RS15210 at 3313.012 kb on - strand, within RALBFv3_RS15210 at 3313.215 kb on + strand, within RALBFv3_RS15210 at 3313.503 kb on + strand at 3313.504 kb on - strand at 3313.524 kb on + strand at 3313.975 kb on - strand, within RALBFv3_RS15215 at 3314.461 kb on - strand, within RALBFv3_RS15215 at 3314.668 kb on - strand at 3314.668 kb on - strand at 3315.029 kb on + strand, within RALBFv3_RS15220 at 3315.117 kb on + strand, within RALBFv3_RS15220 at 3315.293 kb on + strand, within RALBFv3_RS15220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 3,312,675 + RALBFv3_RS15210 0.20 -0.6 3,312,676 - RALBFv3_RS15210 0.20 +0.1 3,313,012 - RALBFv3_RS15210 0.50 -1.0 3,313,215 + RALBFv3_RS15210 0.69 +1.9 3,313,503 + -0.9 3,313,504 - -0.6 3,313,524 + -0.4 3,313,975 - RALBFv3_RS15215 0.35 -0.7 3,314,461 - RALBFv3_RS15215 0.85 +1.2 3,314,668 - +1.1 3,314,668 - +0.3 3,315,029 + RALBFv3_RS15220 0.30 -1.1 3,315,117 + RALBFv3_RS15220 0.42 -0.9 3,315,293 + RALBFv3_RS15220 0.65 -2.8
Or see this region's nucleotide sequence