Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS13785 and RALBFv3_RS13790 are separated by 36 nucleotides RALBFv3_RS13790 and RALBFv3_RS13795 are separated by 182 nucleotides RALBFv3_RS13795 and RALBFv3_RS13800 are separated by 3 nucleotides RALBFv3_RS13800 and RALBFv3_RS13805 are separated by 59 nucleotides
RALBFv3_RS13785: RALBFv3_RS13785 - 30S ribosomal protein S1, at 3,020,953 to 3,022,641
_RS13785
RALBFv3_RS13790: RALBFv3_RS13790 - integration host factor subunit beta, at 3,022,678 to 3,023,100
_RS13790
RALBFv3_RS13795: RALBFv3_RS13795 - DUF1049 domain-containing protein, at 3,023,283 to 3,023,603
_RS13795
RALBFv3_RS13800: RALBFv3_RS13800 - lipopolysaccharide assembly protein LapB, at 3,023,607 to 3,024,884
_RS13800
RALBFv3_RS13805: RALBFv3_RS13805 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 3,024,944 to 3,026,317
_RS13805
Position (kb) 3023
3024
3025 Strain fitness (log2 ratio) -1
0
1
2 at 3022.639 kb on + strand at 3022.640 kb on - strand at 3023.175 kb on + strand at 3023.176 kb on - strand at 3023.213 kb on + strand at 3024.882 kb on + strand at 3024.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 3,022,639 + +1.9 3,022,640 - +0.3 3,023,175 + -1.0 3,023,176 - -0.0 3,023,213 + +0.1 3,024,882 + +0.4 3,024,882 + +0.3
Or see this region's nucleotide sequence