Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04515 and RALBFv3_RS04520 are separated by 93 nucleotides RALBFv3_RS04520 and RALBFv3_RS04525 are separated by 64 nucleotides RALBFv3_RS04525 and RALBFv3_RS04530 are separated by 14 nucleotides
RALBFv3_RS04515: RALBFv3_RS04515 - EVE domain-containing protein, at 1,013,010 to 1,013,480
_RS04515
RALBFv3_RS04520: RALBFv3_RS04520 - DUF541 domain-containing protein, at 1,013,574 to 1,014,290
_RS04520
RALBFv3_RS04525: RALBFv3_RS04525 - prolipoprotein diacylglyceryl transferase, at 1,014,355 to 1,015,266
_RS04525
RALBFv3_RS04530: RALBFv3_RS04530 - LysR family transcriptional regulator, at 1,015,281 to 1,016,216
_RS04530
Position (kb) 1014
1015
1016 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1013.445 kb on + strand at 1013.446 kb on - strand at 1013.505 kb on + strand at 1013.871 kb on + strand, within RALBFv3_RS04520 at 1013.927 kb on - strand, within RALBFv3_RS04520 at 1014.123 kb on + strand, within RALBFv3_RS04520 at 1014.123 kb on + strand, within RALBFv3_RS04520 at 1014.124 kb on - strand, within RALBFv3_RS04520 at 1014.174 kb on - strand, within RALBFv3_RS04520 at 1014.174 kb on - strand, within RALBFv3_RS04520 at 1014.288 kb on + strand at 1014.289 kb on - strand at 1015.620 kb on - strand, within RALBFv3_RS04530 at 1015.620 kb on - strand, within RALBFv3_RS04530 at 1016.067 kb on - strand, within RALBFv3_RS04530 at 1016.194 kb on + strand at 1016.230 kb on - strand at 1016.234 kb on - strand at 1016.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,013,445 + -0.9 1,013,446 - -1.5 1,013,505 + -2.2 1,013,871 + RALBFv3_RS04520 0.41 -0.2 1,013,927 - RALBFv3_RS04520 0.49 -0.4 1,014,123 + RALBFv3_RS04520 0.77 +1.0 1,014,123 + RALBFv3_RS04520 0.77 +0.5 1,014,124 - RALBFv3_RS04520 0.77 +0.6 1,014,174 - RALBFv3_RS04520 0.84 -0.5 1,014,174 - RALBFv3_RS04520 0.84 +0.2 1,014,288 + +0.4 1,014,289 - +1.3 1,015,620 - RALBFv3_RS04530 0.36 -0.4 1,015,620 - RALBFv3_RS04530 0.36 -0.8 1,016,067 - RALBFv3_RS04530 0.84 -0.2 1,016,194 + -0.2 1,016,230 - -0.5 1,016,234 - +0.0 1,016,261 - +3.2
Or see this region's nucleotide sequence