Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03340 and RALBFv3_RS03345 are separated by 94 nucleotides RALBFv3_RS03345 and RALBFv3_RS03350 are separated by 11 nucleotides RALBFv3_RS03350 and RALBFv3_RS03355 are separated by 6 nucleotides
RALBFv3_RS03340: RALBFv3_RS03340 - serine/threonine-protein phosphatase, at 729,324 to 730,235
_RS03340
RALBFv3_RS03345: RALBFv3_RS03345 - ribonuclease PH, at 730,330 to 731,046
_RS03345
RALBFv3_RS03350: RALBFv3_RS03350 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 731,058 to 731,663
_RS03350
RALBFv3_RS03355: RALBFv3_RS03355 - oxygen-independent coproporphyrinogen III oxidase-like protein, at 731,670 to 732,947
_RS03355
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 729.585 kb on + strand, within RALBFv3_RS03340 at 729.813 kb on + strand, within RALBFv3_RS03340 at 730.517 kb on - strand, within RALBFv3_RS03345 at 730.741 kb on + strand, within RALBFv3_RS03345 at 730.858 kb on + strand, within RALBFv3_RS03345 at 731.319 kb on + strand, within RALBFv3_RS03350 at 731.319 kb on + strand, within RALBFv3_RS03350 at 731.412 kb on + strand, within RALBFv3_RS03350 at 731.412 kb on + strand, within RALBFv3_RS03350 at 731.412 kb on + strand, within RALBFv3_RS03350 at 731.430 kb on + strand, within RALBFv3_RS03350 at 731.430 kb on + strand, within RALBFv3_RS03350 at 731.430 kb on + strand, within RALBFv3_RS03350 at 731.431 kb on - strand, within RALBFv3_RS03350 at 731.847 kb on + strand, within RALBFv3_RS03355 at 731.967 kb on - strand, within RALBFv3_RS03355 at 731.967 kb on - strand, within RALBFv3_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 729,585 + RALBFv3_RS03340 0.29 -3.1 729,813 + RALBFv3_RS03340 0.54 -3.4 730,517 - RALBFv3_RS03345 0.26 +0.6 730,741 + RALBFv3_RS03345 0.57 +0.5 730,858 + RALBFv3_RS03345 0.74 -0.6 731,319 + RALBFv3_RS03350 0.43 -0.3 731,319 + RALBFv3_RS03350 0.43 -0.2 731,412 + RALBFv3_RS03350 0.58 -0.1 731,412 + RALBFv3_RS03350 0.58 -0.2 731,412 + RALBFv3_RS03350 0.58 -1.8 731,430 + RALBFv3_RS03350 0.61 +1.4 731,430 + RALBFv3_RS03350 0.61 +0.7 731,430 + RALBFv3_RS03350 0.61 -0.5 731,431 - RALBFv3_RS03350 0.62 +2.1 731,847 + RALBFv3_RS03355 0.14 -0.7 731,967 - RALBFv3_RS03355 0.23 -0.5 731,967 - RALBFv3_RS03355 0.23 -1.2
Or see this region's nucleotide sequence