Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01400 and RALBFv3_RS01405 are separated by 24 nucleotides RALBFv3_RS01405 and RALBFv3_RS01410 are separated by 72 nucleotides RALBFv3_RS01410 and RALBFv3_RS01415 are separated by 279 nucleotides
RALBFv3_RS01400: RALBFv3_RS01400 - hypothetical protein, at 314,642 to 315,826
_RS01400
RALBFv3_RS01405: RALBFv3_RS01405 - DUF1800 domain-containing protein, at 315,851 to 317,479
_RS01405
RALBFv3_RS01410: RALBFv3_RS01410 - hypothetical protein, at 317,552 to 317,902
_RS01410
RALBFv3_RS01415: RALBFv3_RS01415 - two-component system response regulator OmpR, at 318,182 to 318,904
_RS01415
Position (kb) 315
316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 314.927 kb on - strand, within RALBFv3_RS01400 at 315.025 kb on + strand, within RALBFv3_RS01400 at 315.025 kb on + strand, within RALBFv3_RS01400 at 315.435 kb on + strand, within RALBFv3_RS01400 at 315.643 kb on - strand, within RALBFv3_RS01400 at 315.673 kb on + strand, within RALBFv3_RS01400 at 315.894 kb on + strand at 316.667 kb on + strand, within RALBFv3_RS01405 at 316.710 kb on + strand, within RALBFv3_RS01405 at 316.716 kb on + strand, within RALBFv3_RS01405 at 316.750 kb on - strand, within RALBFv3_RS01405 at 316.785 kb on + strand, within RALBFv3_RS01405 at 316.786 kb on - strand, within RALBFv3_RS01405 at 316.965 kb on + strand, within RALBFv3_RS01405 at 317.263 kb on - strand, within RALBFv3_RS01405 at 317.263 kb on - strand, within RALBFv3_RS01405 at 317.314 kb on - strand, within RALBFv3_RS01405 at 317.569 kb on - strand at 317.573 kb on - strand at 317.573 kb on - strand at 317.573 kb on - strand at 317.589 kb on + strand, within RALBFv3_RS01410 at 318.106 kb on - strand at 318.109 kb on + strand at 318.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 314,927 - RALBFv3_RS01400 0.24 +0.7 315,025 + RALBFv3_RS01400 0.32 -0.6 315,025 + RALBFv3_RS01400 0.32 -0.1 315,435 + RALBFv3_RS01400 0.67 -0.1 315,643 - RALBFv3_RS01400 0.84 +0.8 315,673 + RALBFv3_RS01400 0.87 +2.0 315,894 + +0.2 316,667 + RALBFv3_RS01405 0.50 +1.7 316,710 + RALBFv3_RS01405 0.53 -1.1 316,716 + RALBFv3_RS01405 0.53 -1.1 316,750 - RALBFv3_RS01405 0.55 -0.8 316,785 + RALBFv3_RS01405 0.57 -0.1 316,786 - RALBFv3_RS01405 0.57 -0.4 316,965 + RALBFv3_RS01405 0.68 -1.0 317,263 - RALBFv3_RS01405 0.87 -0.5 317,263 - RALBFv3_RS01405 0.87 -0.5 317,314 - RALBFv3_RS01405 0.90 -0.6 317,569 - +0.0 317,573 - -0.4 317,573 - -0.6 317,573 - -0.7 317,589 + RALBFv3_RS01410 0.11 -0.7 318,106 - -2.4 318,109 + -1.1 318,109 + +0.4
Or see this region's nucleotide sequence