Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01010 and RALBFv3_RS01015 are separated by 52 nucleotides RALBFv3_RS01015 and RALBFv3_RS01020 are separated by 60 nucleotides RALBFv3_RS01020 and RALBFv3_RS01025 are separated by 81 nucleotides RALBFv3_RS01025 and RALBFv3_RS01030 overlap by 4 nucleotides
RALBFv3_RS01010: RALBFv3_RS01010 - TatD family deoxyribonuclease, at 226,690 to 227,493
_RS01010
RALBFv3_RS01015: RALBFv3_RS01015 - pilus assembly protein, at 227,546 to 227,932
_RS01015
RALBFv3_RS01020: RALBFv3_RS01020 - DNA polymerase III subunit delta', at 227,993 to 229,003
_RS01020
RALBFv3_RS01025: RALBFv3_RS01025 - dTMP kinase, at 229,085 to 229,702
_RS01025
RALBFv3_RS01030: RALBFv3_RS01030 - endolytic transglycosylase MltG, at 229,699 to 230,697
_RS01030
Position (kb) 227
228
229
230 Strain fitness (log2 ratio) -1
0
1
2 at 227.187 kb on - strand, within RALBFv3_RS01010 at 227.187 kb on - strand, within RALBFv3_RS01010 at 227.324 kb on + strand, within RALBFv3_RS01010 at 227.324 kb on + strand, within RALBFv3_RS01010 at 227.325 kb on - strand, within RALBFv3_RS01010 at 227.798 kb on - strand, within RALBFv3_RS01015 at 227.823 kb on + strand, within RALBFv3_RS01015 at 227.823 kb on + strand, within RALBFv3_RS01015 at 227.824 kb on - strand, within RALBFv3_RS01015 at 227.956 kb on + strand at 227.957 kb on - strand at 227.957 kb on - strand at 229.060 kb on - strand at 229.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 227,187 - RALBFv3_RS01010 0.62 +1.9 227,187 - RALBFv3_RS01010 0.62 +0.5 227,324 + RALBFv3_RS01010 0.79 +0.7 227,324 + RALBFv3_RS01010 0.79 +0.6 227,325 - RALBFv3_RS01010 0.79 +0.2 227,798 - RALBFv3_RS01015 0.65 +2.3 227,823 + RALBFv3_RS01015 0.72 +0.9 227,823 + RALBFv3_RS01015 0.72 -0.9 227,824 - RALBFv3_RS01015 0.72 +1.9 227,956 + -0.3 227,957 - +2.2 227,957 - +1.1 229,060 - +1.0 229,794 - +1.1
Or see this region's nucleotide sequence