Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22415

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS22410 and PFLU_RS22415 are separated by 222 nucleotidesPFLU_RS22415 and PFLU_RS22420 are separated by 65 nucleotides PFLU_RS22410: PFLU_RS22410 - acyl-CoA dehydrogenase, at 5,038,479 to 5,039,627 _RS22410 PFLU_RS22415: PFLU_RS22415 - recombination protein RecR, at 5,039,850 to 5,040,452 _RS22415 PFLU_RS22420: PFLU_RS22420 - NADP-dependent oxidoreductase, at 5,040,518 to 5,041,552 _RS22420 Position (kb) 5039 5040 5041Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5038.983 kb on + strand, within PFLU_RS22410at 5038.983 kb on + strand, within PFLU_RS22410at 5038.984 kb on - strand, within PFLU_RS22410at 5038.984 kb on - strand, within PFLU_RS22410at 5039.120 kb on - strand, within PFLU_RS22410at 5039.173 kb on + strand, within PFLU_RS22410at 5039.494 kb on + strand, within PFLU_RS22410at 5039.494 kb on + strand, within PFLU_RS22410at 5039.494 kb on + strand, within PFLU_RS22410at 5039.494 kb on + strand, within PFLU_RS22410at 5039.494 kb on + strand, within PFLU_RS22410at 5039.494 kb on + strand, within PFLU_RS22410at 5039.494 kb on + strand, within PFLU_RS22410at 5039.495 kb on - strand, within PFLU_RS22410at 5039.495 kb on - strand, within PFLU_RS22410at 5039.495 kb on - strand, within PFLU_RS22410at 5039.495 kb on - strand, within PFLU_RS22410at 5039.608 kb on + strandat 5039.608 kb on + strandat 5039.609 kb on - strandat 5039.609 kb on - strandat 5039.609 kb on - strandat 5039.609 kb on - strandat 5039.617 kb on + strandat 5039.617 kb on + strandat 5039.618 kb on - strandat 5039.618 kb on - strandat 5039.659 kb on + strandat 5039.689 kb on - strandat 5039.689 kb on - strandat 5039.702 kb on + strandat 5039.702 kb on + strandat 5039.702 kb on + strandat 5039.703 kb on - strandat 5039.703 kb on - strandat 5039.703 kb on - strandat 5039.767 kb on + strandat 5039.767 kb on + strandat 5039.767 kb on + strandat 5039.767 kb on + strandat 5039.767 kb on + strandat 5039.768 kb on - strandat 5039.768 kb on - strandat 5039.768 kb on - strandat 5039.836 kb on + strandat 5039.836 kb on + strandat 5039.836 kb on + strandat 5039.836 kb on + strandat 5039.836 kb on + strandat 5039.836 kb on + strandat 5039.837 kb on - strandat 5039.837 kb on - strandat 5039.851 kb on + strandat 5039.851 kb on + strandat 5039.851 kb on + strandat 5039.852 kb on - strandat 5039.852 kb on - strandat 5039.867 kb on + strandat 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.989 kb on + strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5039.990 kb on - strand, within PFLU_RS22415at 5040.145 kb on + strand, within PFLU_RS22415at 5040.146 kb on - strand, within PFLU_RS22415at 5040.146 kb on - strand, within PFLU_RS22415at 5040.146 kb on - strand, within PFLU_RS22415at 5040.178 kb on + strand, within PFLU_RS22415at 5040.179 kb on - strand, within PFLU_RS22415at 5040.179 kb on - strand, within PFLU_RS22415at 5040.179 kb on - strand, within PFLU_RS22415at 5040.372 kb on - strand, within PFLU_RS22415at 5040.372 kb on - strand, within PFLU_RS22415at 5040.487 kb on + strandat 5040.488 kb on - strandat 5040.488 kb on - strandat 5040.489 kb on + strandat 5040.489 kb on + strandat 5040.578 kb on - strandat 5040.629 kb on - strand, within PFLU_RS22420at 5040.629 kb on - strand, within PFLU_RS22420at 5040.629 kb on - strand, within PFLU_RS22420at 5040.629 kb on - strand, within PFLU_RS22420at 5040.691 kb on - strand, within PFLU_RS22420at 5040.691 kb on - strand, within PFLU_RS22420at 5040.691 kb on - strand, within PFLU_RS22420at 5040.691 kb on - strand, within PFLU_RS22420at 5040.691 kb on - strand, within PFLU_RS22420at 5040.707 kb on - strand, within PFLU_RS22420at 5040.742 kb on + strand, within PFLU_RS22420at 5040.742 kb on + strand, within PFLU_RS22420at 5040.742 kb on + strand, within PFLU_RS22420at 5040.742 kb on + strand, within PFLU_RS22420at 5040.742 kb on + strand, within PFLU_RS22420at 5040.743 kb on - strand, within PFLU_RS22420at 5040.743 kb on - strand, within PFLU_RS22420at 5040.743 kb on - strand, within PFLU_RS22420at 5040.743 kb on - strand, within PFLU_RS22420at 5040.743 kb on - strand, within PFLU_RS22420at 5040.795 kb on + strand, within PFLU_RS22420at 5040.839 kb on - strand, within PFLU_RS22420at 5040.888 kb on + strand, within PFLU_RS22420at 5040.888 kb on + strand, within PFLU_RS22420at 5040.888 kb on + strand, within PFLU_RS22420at 5040.888 kb on + strand, within PFLU_RS22420at 5040.888 kb on + strand, within PFLU_RS22420at 5040.888 kb on + strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.889 kb on - strand, within PFLU_RS22420at 5040.907 kb on + strand, within PFLU_RS22420at 5040.907 kb on + strand, within PFLU_RS22420at 5040.907 kb on + strand, within PFLU_RS22420at 5040.987 kb on + strand, within PFLU_RS22420at 5040.988 kb on - strand, within PFLU_RS22420at 5040.988 kb on - strand, within PFLU_RS22420at 5040.988 kb on - strand, within PFLU_RS22420at 5041.140 kb on + strand, within PFLU_RS22420at 5041.140 kb on + strand, within PFLU_RS22420at 5041.140 kb on + strand, within PFLU_RS22420at 5041.140 kb on + strand, within PFLU_RS22420at 5041.140 kb on + strand, within PFLU_RS22420at 5041.140 kb on + strand, within PFLU_RS22420at 5041.140 kb on + strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.141 kb on - strand, within PFLU_RS22420at 5041.237 kb on + strand, within PFLU_RS22420at 5041.237 kb on + strand, within PFLU_RS22420at 5041.238 kb on - strand, within PFLU_RS22420at 5041.238 kb on - strand, within PFLU_RS22420at 5041.238 kb on - strand, within PFLU_RS22420at 5041.362 kb on + strand, within PFLU_RS22420at 5041.362 kb on + strand, within PFLU_RS22420at 5041.362 kb on + strand, within PFLU_RS22420at 5041.363 kb on - strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.381 kb on + strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.382 kb on - strand, within PFLU_RS22420at 5041.395 kb on + strand, within PFLU_RS22420at 5041.395 kb on + strand, within PFLU_RS22420at 5041.395 kb on + strand, within PFLU_RS22420at 5041.395 kb on + strand, within PFLU_RS22420at 5041.395 kb on + strand, within PFLU_RS22420at 5041.395 kb on + strand, within PFLU_RS22420at 5041.395 kb on + strand, within PFLU_RS22420at 5041.396 kb on - strand, within PFLU_RS22420at 5041.396 kb on - strand, within PFLU_RS22420at 5041.396 kb on - strand, within PFLU_RS22420at 5041.396 kb on - strand, within PFLU_RS22420at 5041.396 kb on - strand, within PFLU_RS22420at 5041.396 kb on - strand, within PFLU_RS22420at 5041.396 kb on - strand, within PFLU_RS22420at 5041.413 kb on + strand, within PFLU_RS22420at 5041.413 kb on + strand, within PFLU_RS22420at 5041.413 kb on + strand, within PFLU_RS22420at 5041.413 kb on + strand, within PFLU_RS22420at 5041.414 kb on - strand, within PFLU_RS22420at 5041.414 kb on - strand, within PFLU_RS22420at 5041.414 kb on - strand, within PFLU_RS22420at 5041.414 kb on - strand, within PFLU_RS22420at 5041.414 kb on - strand, within PFLU_RS22420at 5041.414 kb on - strand, within PFLU_RS22420

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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5,038,983 + PFLU_RS22410 0.44 -2.8
5,038,983 + PFLU_RS22410 0.44 +1.2
5,038,984 - PFLU_RS22410 0.44 +0.3
5,038,984 - PFLU_RS22410 0.44 -0.8
5,039,120 - PFLU_RS22410 0.56 -0.5
5,039,173 + PFLU_RS22410 0.60 +0.5
5,039,494 + PFLU_RS22410 0.88 +2.2
5,039,494 + PFLU_RS22410 0.88 -0.1
5,039,494 + PFLU_RS22410 0.88 -3.3
5,039,494 + PFLU_RS22410 0.88 -3.0
5,039,494 + PFLU_RS22410 0.88 +0.2
5,039,494 + PFLU_RS22410 0.88 +0.8
5,039,494 + PFLU_RS22410 0.88 -1.9
5,039,495 - PFLU_RS22410 0.88 -1.0
5,039,495 - PFLU_RS22410 0.88 -0.6
5,039,495 - PFLU_RS22410 0.88 +0.8
5,039,495 - PFLU_RS22410 0.88 +1.6
5,039,608 + +0.9
5,039,608 + -0.8
5,039,609 - +1.4
5,039,609 - -1.2
5,039,609 - -1.2
5,039,609 - +2.0
5,039,617 + +0.4
5,039,617 + -2.1
5,039,618 - +1.5
5,039,618 - +1.0
5,039,659 + +0.8
5,039,689 - -1.7
5,039,689 - -0.8
5,039,702 + -2.6
5,039,702 + -0.8
5,039,702 + +0.0
5,039,703 - +1.5
5,039,703 - -2.5
5,039,703 - -0.8
5,039,767 + -0.2
5,039,767 + +0.2
5,039,767 + +0.7
5,039,767 + +3.4
5,039,767 + +1.0
5,039,768 - -3.6
5,039,768 - -2.7
5,039,768 - -0.8
5,039,836 + +1.4
5,039,836 + +1.7
5,039,836 + -0.5
5,039,836 + -3.1
5,039,836 + +2.0
5,039,836 + +0.8
5,039,837 - +0.4
5,039,837 - +1.7
5,039,851 + -0.5
5,039,851 + -0.3
5,039,851 + -1.2
5,039,852 - -2.5
5,039,852 - -1.9
5,039,867 + +0.1
5,039,989 + PFLU_RS22415 0.23 +0.8
5,039,989 + PFLU_RS22415 0.23 +0.1
5,039,989 + PFLU_RS22415 0.23 -0.8
5,039,989 + PFLU_RS22415 0.23 +0.2
5,039,989 + PFLU_RS22415 0.23 +0.8
5,039,989 + PFLU_RS22415 0.23 -2.2
5,039,989 + PFLU_RS22415 0.23 -1.2
5,039,989 + PFLU_RS22415 0.23 +1.7
5,039,989 + PFLU_RS22415 0.23 -1.1
5,039,989 + PFLU_RS22415 0.23 -2.1
5,039,989 + PFLU_RS22415 0.23 +0.8
5,039,989 + PFLU_RS22415 0.23 +0.6
5,039,989 + PFLU_RS22415 0.23 -1.5
5,039,989 + PFLU_RS22415 0.23 -2.9
5,039,990 - PFLU_RS22415 0.23 -2.5
5,039,990 - PFLU_RS22415 0.23 -2.4
5,039,990 - PFLU_RS22415 0.23 -0.5
5,039,990 - PFLU_RS22415 0.23 +0.2
5,039,990 - PFLU_RS22415 0.23 +0.5
5,039,990 - PFLU_RS22415 0.23 -1.8
5,039,990 - PFLU_RS22415 0.23 +1.5
5,039,990 - PFLU_RS22415 0.23 -3.1
5,039,990 - PFLU_RS22415 0.23 -2.5
5,039,990 - PFLU_RS22415 0.23 +0.5
5,040,145 + PFLU_RS22415 0.49 +1.9
5,040,146 - PFLU_RS22415 0.49 +0.2
5,040,146 - PFLU_RS22415 0.49 +1.2
5,040,146 - PFLU_RS22415 0.49 -0.2
5,040,178 + PFLU_RS22415 0.54 -1.7
5,040,179 - PFLU_RS22415 0.55 -2.2
5,040,179 - PFLU_RS22415 0.55 -2.5
5,040,179 - PFLU_RS22415 0.55 -1.9
5,040,372 - PFLU_RS22415 0.87 -0.6
5,040,372 - PFLU_RS22415 0.87 -1.0
5,040,487 + -1.8
5,040,488 - -1.5
5,040,488 - +0.7
5,040,489 + +1.1
5,040,489 + -2.7
5,040,578 - +0.8
5,040,629 - PFLU_RS22420 0.11 +1.4
5,040,629 - PFLU_RS22420 0.11 -0.9
5,040,629 - PFLU_RS22420 0.11 +3.0
5,040,629 - PFLU_RS22420 0.11 -1.0
5,040,691 - PFLU_RS22420 0.17 -1.1
5,040,691 - PFLU_RS22420 0.17 +0.5
5,040,691 - PFLU_RS22420 0.17 +1.5
5,040,691 - PFLU_RS22420 0.17 -1.0
5,040,691 - PFLU_RS22420 0.17 +0.5
5,040,707 - PFLU_RS22420 0.18 -1.0
5,040,742 + PFLU_RS22420 0.22 +2.3
5,040,742 + PFLU_RS22420 0.22 +2.6
5,040,742 + PFLU_RS22420 0.22 +1.2
5,040,742 + PFLU_RS22420 0.22 +1.2
5,040,742 + PFLU_RS22420 0.22 -0.5
5,040,743 - PFLU_RS22420 0.22 -0.1
5,040,743 - PFLU_RS22420 0.22 +3.1
5,040,743 - PFLU_RS22420 0.22 +1.0
5,040,743 - PFLU_RS22420 0.22 -2.3
5,040,743 - PFLU_RS22420 0.22 +0.2
5,040,795 + PFLU_RS22420 0.27 +0.9
5,040,839 - PFLU_RS22420 0.31 -3.5
5,040,888 + PFLU_RS22420 0.36 -1.5
5,040,888 + PFLU_RS22420 0.36 +1.2
5,040,888 + PFLU_RS22420 0.36 -2.1
5,040,888 + PFLU_RS22420 0.36 -2.8
5,040,888 + PFLU_RS22420 0.36 +0.6
5,040,888 + PFLU_RS22420 0.36 -1.3
5,040,889 - PFLU_RS22420 0.36 +3.3
5,040,889 - PFLU_RS22420 0.36 +1.5
5,040,889 - PFLU_RS22420 0.36 +1.3
5,040,889 - PFLU_RS22420 0.36 -3.6
5,040,889 - PFLU_RS22420 0.36 -2.2
5,040,889 - PFLU_RS22420 0.36 +2.3
5,040,889 - PFLU_RS22420 0.36 +0.2
5,040,889 - PFLU_RS22420 0.36 +0.2
5,040,889 - PFLU_RS22420 0.36 +1.2
5,040,889 - PFLU_RS22420 0.36 -0.3
5,040,889 - PFLU_RS22420 0.36 -1.0
5,040,889 - PFLU_RS22420 0.36 +2.4
5,040,889 - PFLU_RS22420 0.36 +1.8
5,040,907 + PFLU_RS22420 0.38 -3.3
5,040,907 + PFLU_RS22420 0.38 -0.8
5,040,907 + PFLU_RS22420 0.38 -1.4
5,040,987 + PFLU_RS22420 0.45 -1.7
5,040,988 - PFLU_RS22420 0.45 -0.8
5,040,988 - PFLU_RS22420 0.45 -0.3
5,040,988 - PFLU_RS22420 0.45 +2.4
5,041,140 + PFLU_RS22420 0.60 +3.3
5,041,140 + PFLU_RS22420 0.60 -0.7
5,041,140 + PFLU_RS22420 0.60 +1.0
5,041,140 + PFLU_RS22420 0.60 -0.8
5,041,140 + PFLU_RS22420 0.60 -1.4
5,041,140 + PFLU_RS22420 0.60 +1.1
5,041,140 + PFLU_RS22420 0.60 -2.0
5,041,141 - PFLU_RS22420 0.60 +1.8
5,041,141 - PFLU_RS22420 0.60 +0.2
5,041,141 - PFLU_RS22420 0.60 -3.1
5,041,141 - PFLU_RS22420 0.60 -2.5
5,041,141 - PFLU_RS22420 0.60 +0.2
5,041,141 - PFLU_RS22420 0.60 -1.4
5,041,141 - PFLU_RS22420 0.60 -0.0
5,041,141 - PFLU_RS22420 0.60 +1.8
5,041,141 - PFLU_RS22420 0.60 +2.1
5,041,141 - PFLU_RS22420 0.60 -3.3
5,041,141 - PFLU_RS22420 0.60 +0.2
5,041,141 - PFLU_RS22420 0.60 -2.5
5,041,237 + PFLU_RS22420 0.69 -0.3
5,041,237 + PFLU_RS22420 0.69 -0.2
5,041,238 - PFLU_RS22420 0.70 -0.5
5,041,238 - PFLU_RS22420 0.70 -2.4
5,041,238 - PFLU_RS22420 0.70 +0.1
5,041,362 + PFLU_RS22420 0.82 +0.6
5,041,362 + PFLU_RS22420 0.82 -1.7
5,041,362 + PFLU_RS22420 0.82 +1.4
5,041,363 - PFLU_RS22420 0.82 -0.8
5,041,381 + PFLU_RS22420 0.83 +1.4
5,041,381 + PFLU_RS22420 0.83 +1.4
5,041,381 + PFLU_RS22420 0.83 -0.5
5,041,381 + PFLU_RS22420 0.83 +3.3
5,041,381 + PFLU_RS22420 0.83 +0.8
5,041,381 + PFLU_RS22420 0.83 -2.1
5,041,381 + PFLU_RS22420 0.83 -1.5
5,041,381 + PFLU_RS22420 0.83 +0.4
5,041,382 - PFLU_RS22420 0.83 +2.0
5,041,382 - PFLU_RS22420 0.83 +1.5
5,041,382 - PFLU_RS22420 0.83 +2.1
5,041,382 - PFLU_RS22420 0.83 -1.9
5,041,382 - PFLU_RS22420 0.83 +1.6
5,041,382 - PFLU_RS22420 0.83 +0.5
5,041,382 - PFLU_RS22420 0.83 +1.8
5,041,382 - PFLU_RS22420 0.83 +1.1
5,041,382 - PFLU_RS22420 0.83 +1.3
5,041,382 - PFLU_RS22420 0.83 -2.2
5,041,382 - PFLU_RS22420 0.83 -2.7
5,041,395 + PFLU_RS22420 0.85 -2.2
5,041,395 + PFLU_RS22420 0.85 -2.9
5,041,395 + PFLU_RS22420 0.85 -0.5
5,041,395 + PFLU_RS22420 0.85 +0.8
5,041,395 + PFLU_RS22420 0.85 +0.3
5,041,395 + PFLU_RS22420 0.85 -1.2
5,041,395 + PFLU_RS22420 0.85 +2.1
5,041,396 - PFLU_RS22420 0.85 -0.5
5,041,396 - PFLU_RS22420 0.85 +0.2
5,041,396 - PFLU_RS22420 0.85 +0.7
5,041,396 - PFLU_RS22420 0.85 -2.9
5,041,396 - PFLU_RS22420 0.85 +1.5
5,041,396 - PFLU_RS22420 0.85 +0.9
5,041,396 - PFLU_RS22420 0.85 -1.7
5,041,413 + PFLU_RS22420 0.86 +1.1
5,041,413 + PFLU_RS22420 0.86 -0.1
5,041,413 + PFLU_RS22420 0.86 +1.6
5,041,413 + PFLU_RS22420 0.86 -2.4
5,041,414 - PFLU_RS22420 0.87 -2.0
5,041,414 - PFLU_RS22420 0.87 +1.6
5,041,414 - PFLU_RS22420 0.87 +1.0
5,041,414 - PFLU_RS22420 0.87 -1.2
5,041,414 - PFLU_RS22420 0.87 -1.5
5,041,414 - PFLU_RS22420 0.87 -1.2

Or see this region's nucleotide sequence