Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06960

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE
1,276,707	-		MMJJ_RS06955	0.51	+0.3
1,276,881	-		MMJJ_RS06955	0.65	+0.3
1,277,374	-				+0.3
1,277,404	-				-2.4
1,277,405	+				+1.6
1,277,441	+				+1.7
1,277,448	-				+2.2
1,277,448	-				+0.9
1,277,454	+				+1.7
1,277,457	-				-0.3
1,277,458	+				-0.3
1,277,458	+				-1.4
1,277,458	+				+1.3
1,277,480	+				+2.5
1,277,481	-				+1.4
1,277,481	-				+1.4
1,277,481	-				-3.6
1,277,482	+				-3.6
1,277,482	+				+0.9
1,277,484	-				+0.1
1,277,484	-				-2.4
1,277,484	-				-2.7
1,277,484	-				-1.4
1,277,484	-				-0.5
1,277,485	+				+1.2
1,277,485	+				-0.7
1,277,485	+				-1.7
1,277,485	+				-0.8
1,277,485	+				-2.4
1,277,485	+				-1.2
1,277,488	-				-2.9
1,277,489	+				+1.5
1,277,489	+				+1.5
1,277,489	+				+1.8
1,277,509	-				-2.0
1,277,513	-				+1.7
1,277,513	-				-0.8
1,277,513	-				+0.9
1,277,513	-				+1.7
1,277,513	-				-0.9
1,277,513	-				-2.5
1,277,513	-				+1.9
1,277,513	-				+0.3
1,277,514	+				-2.1
1,277,514	+				-3.2
1,277,514	+				-1.3
1,277,514	+				+0.8
1,277,514	+				-4.3
1,277,514	+				+1.0
1,277,514	+				-0.4
1,277,514	+				-0.4
1,277,534	-				+1.0
1,277,535	+				+1.3
1,277,594	+				+1.4
1,277,594	+				+1.7
1,277,616	-		MMJJ_RS06960	0.11	+0.2
1,277,617	+		MMJJ_RS06960	0.11	-0.9
1,277,617	+		MMJJ_RS06960	0.11	+1.9
1,277,631	+		MMJJ_RS06960	0.12	-0.3
1,277,631	+		MMJJ_RS06960	0.12	+0.6
1,277,679	-		MMJJ_RS06960	0.15	+0.5
1,277,698	+		MMJJ_RS06960	0.17	-1.4
1,277,702	-		MMJJ_RS06960	0.17	-0.4
1,277,703	+		MMJJ_RS06960	0.17	+0.8
1,277,713	+		MMJJ_RS06960	0.18	+2.0
1,277,760	+		MMJJ_RS06960	0.21	+1.4
1,277,772	-		MMJJ_RS06960	0.22	-1.3
1,277,828	+		MMJJ_RS06960	0.26	+0.9
1,277,834	-		MMJJ_RS06960	0.26	+1.3
1,277,835	+		MMJJ_RS06960	0.26	-2.8
1,277,853	-		MMJJ_RS06960	0.27	+2.3
1,277,872	-		MMJJ_RS06960	0.29	+0.5
1,277,872	-		MMJJ_RS06960	0.29	+1.5
1,277,872	-		MMJJ_RS06960	0.29	+1.3
1,277,872	-		MMJJ_RS06960	0.29	-0.6
1,277,873	+		MMJJ_RS06960	0.29	+1.7
1,277,873	+		MMJJ_RS06960	0.29	-1.1
1,277,873	+		MMJJ_RS06960	0.29	-2.1
1,277,875	-		MMJJ_RS06960	0.29	-1.1
1,277,875	-		MMJJ_RS06960	0.29	+1.4
1,277,875	-		MMJJ_RS06960	0.29	+1.2
1,277,875	-		MMJJ_RS06960	0.29	+1.0
1,277,876	+		MMJJ_RS06960	0.29	-0.4
1,277,876	+		MMJJ_RS06960	0.29	-0.7
1,277,876	+		MMJJ_RS06960	0.29	-2.0
1,277,876	+		MMJJ_RS06960	0.29	+1.5
1,277,877	-		MMJJ_RS06960	0.29	+0.9
1,277,877	-		MMJJ_RS06960	0.29	+1.4
1,277,877	-		MMJJ_RS06960	0.29	-1.8
1,277,878	+		MMJJ_RS06960	0.29	-2.0
1,277,878	+		MMJJ_RS06960	0.29	+1.4
1,277,885	-		MMJJ_RS06960	0.30	+1.5
1,277,885	-		MMJJ_RS06960	0.30	-0.5
1,277,886	+		MMJJ_RS06960	0.30	+1.9
1,277,886	+		MMJJ_RS06960	0.30	+1.5
1,277,886	+		MMJJ_RS06960	0.30	+1.8
1,277,886	+		MMJJ_RS06960	0.30	+1.3
1,277,887	-		MMJJ_RS06960	0.30	+0.5
1,277,887	-		MMJJ_RS06960	0.30	+1.4
1,277,887	-		MMJJ_RS06960	0.30	-1.0
1,277,887	-		MMJJ_RS06960	0.30	-1.8
1,277,887	-		MMJJ_RS06960	0.30	-1.9
1,277,888	+		MMJJ_RS06960	0.30	-1.0
1,277,888	+		MMJJ_RS06960	0.30	+0.9
1,277,888	+		MMJJ_RS06960	0.30	+1.8
1,277,888	+		MMJJ_RS06960	0.30	+1.2
1,277,888	+		MMJJ_RS06960	0.30	+0.7
1,277,888	+		MMJJ_RS06960	0.30	+0.3
1,277,888	+		MMJJ_RS06960	0.30	-0.7
1,277,888	+		MMJJ_RS06960	0.30	-2.2
1,277,888	+		MMJJ_RS06960	0.30	+1.6
1,277,888	+		MMJJ_RS06960	0.30	+1.0
1,277,888	+		MMJJ_RS06960	0.30	+1.5
1,277,889	-		MMJJ_RS06960	0.30	-1.7
1,277,889	-		MMJJ_RS06960	0.30	-1.9
1,277,890	+		MMJJ_RS06960	0.30	-0.9
1,277,890	+		MMJJ_RS06960	0.30	-1.5
1,277,890	+		MMJJ_RS06960	0.30	+1.5
1,277,890	+		MMJJ_RS06960	0.30	-2.9
1,277,911	-		MMJJ_RS06960	0.31	+1.1
1,277,915	-		MMJJ_RS06960	0.32	-0.4
1,277,916	+		MMJJ_RS06960	0.32	-1.3
1,277,916	+		MMJJ_RS06960	0.32	+1.8
1,277,916	+		MMJJ_RS06960	0.32	-0.4
1,277,916	+		MMJJ_RS06960	0.32	+2.2
1,277,916	+		MMJJ_RS06960	0.32	-0.3
1,277,916	+		MMJJ_RS06960	0.32	-1.5
1,277,916	+		MMJJ_RS06960	0.32	-2.1
1,277,916	+		MMJJ_RS06960	0.32	-0.7
1,277,916	+		MMJJ_RS06960	0.32	+1.8
1,277,918	-		MMJJ_RS06960	0.32	+1.7
1,277,919	+		MMJJ_RS06960	0.32	-1.9
1,277,919	+		MMJJ_RS06960	0.32	+2.6
1,277,930	-		MMJJ_RS06960	0.33	-4.6
1,277,933	-		MMJJ_RS06960	0.33	-1.3
1,277,945	-		MMJJ_RS06960	0.34	-0.8
1,277,963	-		MMJJ_RS06960	0.35	+1.6
1,277,963	-		MMJJ_RS06960	0.35	-2.3
1,277,978	-		MMJJ_RS06960	0.36	-0.4
1,278,156	+		MMJJ_RS06960	0.48	+2.4
1,278,171	+		MMJJ_RS06960	0.49	+1.0
1,278,193	-		MMJJ_RS06960	0.51	-1.1
1,278,199	-		MMJJ_RS06960	0.51	+2.0
1,278,199	-		MMJJ_RS06960	0.51	-2.8
1,278,199	-		MMJJ_RS06960	0.51	+0.0
1,278,199	-		MMJJ_RS06960	0.51	-2.9
1,278,200	+		MMJJ_RS06960	0.51	-1.4
1,278,202	+		MMJJ_RS06960	0.51	-0.7
1,278,203	-		MMJJ_RS06960	0.52	-2.0
1,278,249	-		MMJJ_RS06960	0.55	-0.6
1,278,274	-		MMJJ_RS06960	0.56	+0.3
1,278,560	+		MMJJ_RS06960	0.76	-1.3
1,278,584	+		MMJJ_RS06960	0.78	+1.8
1,278,602	-		MMJJ_RS06960	0.79	-1.7
1,278,603	+		MMJJ_RS06960	0.79	+1.8
1,278,607	-		MMJJ_RS06960	0.79	-0.4
1,278,607	-		MMJJ_RS06960	0.79	+2.2
1,278,607	-		MMJJ_RS06960	0.79	-0.5
1,278,607	-		MMJJ_RS06960	0.79	+1.3
1,278,607	-		MMJJ_RS06960	0.79	+1.1
1,278,608	+		MMJJ_RS06960	0.80	-0.4
1,278,608	+		MMJJ_RS06960	0.80	+1.8
1,278,608	+		MMJJ_RS06960	0.80	+2.3
1,278,608	+		MMJJ_RS06960	0.80	-0.5
1,278,611	-		MMJJ_RS06960	0.80	+1.7
1,278,621	-		MMJJ_RS06960	0.80	-0.5
1,278,621	-		MMJJ_RS06960	0.80	-2.1
1,278,621	-		MMJJ_RS06960	0.80	-0.9
1,278,622	+		MMJJ_RS06960	0.80	-0.7
1,278,622	+		MMJJ_RS06960	0.80	-1.2
1,278,622	+		MMJJ_RS06960	0.80	+1.0
1,278,622	+		MMJJ_RS06960	0.80	-3.1
1,278,626	+		MMJJ_RS06960	0.81	+1.7
1,278,641	-		MMJJ_RS06960	0.82	+0.8
1,278,641	-				+3.3
1,278,662	-		MMJJ_RS06960	0.83	+0.2
1,278,672	-		MMJJ_RS06960	0.84	-0.6
1,278,672	-		MMJJ_RS06960	0.84	-0.6
1,278,672	-		MMJJ_RS06960	0.84	-1.1
1,278,672	-		MMJJ_RS06960	0.84	-2.7
1,278,672	-		MMJJ_RS06960	0.84	+1.2
1,278,673	+		MMJJ_RS06960	0.84	+1.5
1,278,673	+		MMJJ_RS06960	0.84	+1.0
1,278,673	+		MMJJ_RS06960	0.84	+0.7
1,278,673	+		MMJJ_RS06960	0.84	+0.5
1,278,673	+		MMJJ_RS06960	0.84	-0.6
1,278,696	-		MMJJ_RS06960	0.86	+0.3
1,278,706	-		MMJJ_RS06960	0.86	+1.4
1,278,737	-		MMJJ_RS06960	0.88	-1.5
1,278,738	+		MMJJ_RS06960	0.88	-1.1
1,278,738	+		MMJJ_RS06960	0.88	-2.5
1,278,751	-		MMJJ_RS06960	0.89	-0.6
1,278,752	+		MMJJ_RS06960	0.89	-4.3
1,278,759	+		MMJJ_RS06960	0.90	+1.6
1,278,759	+		MMJJ_RS06960	0.90	+0.6
1,278,763	-				+0.9
1,278,790	+				-1.4
1,278,790	+				-2.6
1,278,794	-				+1.3
1,278,795	+				-2.8
1,278,795	+				+1.5
1,278,865	-				-1.6
1,278,865	-				-1.3
1,278,865	-				+0.0
1,278,866	+				+1.8
1,278,866	+				+1.1
1,278,866	+				+1.0
1,278,869	-				-1.9
1,278,870	+				+0.9
1,278,870	+				-0.9
1,278,880	-				-0.7
1,278,881	+				+2.2
1,278,909	-				+1.2
1,278,910	+				+0.7
1,278,920	+				+1.6
1,278,920	+				+1.4
1,278,921	-				-3.0
1,278,921	-				-2.0
1,278,921	-				+1.8
1,278,922	+				+1.4
1,278,922	+				-1.6
1,278,958	-				-1.7
1,278,960	-				-0.4
1,278,962	-				-0.7
1,278,963	+				+1.6
1,279,077	-				+0.5
1,279,082	+				+0.5
1,279,084	+				+2.5
1,279,087	-				+0.3
1,279,088	+				-1.4
1,279,088	+				-1.3
1,279,088	+				+0.9
1,279,092	-				-0.1
1,279,097	+				+2.2
1,279,154	+				+0.3
1,279,441	-		MMJJ_RS06965	0.32	-1.3
1,279,470	-		MMJJ_RS06965	0.34	-1.3
1,279,484	-				-0.7
1,279,518	+		MMJJ_RS06965	0.39	-2.7