Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03675 and MMJJ_RS03680 are separated by 91 nucleotides MMJJ_RS03680 and MMJJ_RS03685 are separated by 367 nucleotides
MMJJ_RS03675: MMJJ_RS03675 - dihydroxy-acid dehydratase, at 685,797 to 687,449
_RS03675
MMJJ_RS03680: MMJJ_RS03680 - fructose-1,6-bisphosphatase, at 687,541 to 688,692
_RS03680
MMJJ_RS03685: MMJJ_RS03685 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 689,060 to 690,898
_RS03685
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 686.728 kb on + strand, within MMJJ_RS03675 at 686.740 kb on - strand, within MMJJ_RS03675 at 687.458 kb on - strand at 687.462 kb on - strand at 687.462 kb on - strand at 687.526 kb on - strand at 687.527 kb on + strand at 687.543 kb on + strand at 688.222 kb on - strand, within MMJJ_RS03680 at 688.262 kb on - strand at 688.731 kb on - strand at 688.736 kb on - strand at 688.791 kb on - strand at 688.812 kb on - strand at 688.813 kb on + strand at 688.813 kb on + strand at 688.816 kb on - strand at 688.824 kb on - strand at 688.831 kb on - strand at 688.832 kb on + strand at 688.832 kb on + strand at 688.833 kb on - strand at 688.833 kb on - strand at 688.834 kb on + strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.836 kb on + strand at 688.836 kb on + strand at 688.836 kb on + strand at 688.839 kb on - strand at 688.858 kb on - strand at 688.859 kb on + strand at 688.862 kb on - strand at 688.862 kb on - strand at 688.863 kb on + strand at 688.867 kb on + strand at 688.867 kb on + strand at 688.871 kb on - strand at 688.871 kb on - strand at 688.871 kb on - strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.874 kb on - strand at 688.875 kb on + strand at 688.881 kb on - strand at 688.882 kb on + strand at 688.886 kb on - strand at 688.897 kb on - strand at 688.897 kb on - strand at 688.908 kb on - strand at 688.908 kb on - strand at 688.937 kb on + strand at 688.958 kb on + strand at 688.973 kb on - strand at 688.974 kb on + strand at 688.977 kb on - strand at 688.978 kb on + strand at 688.978 kb on + strand at 688.979 kb on - strand at 688.980 kb on + strand at 688.980 kb on + strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.983 kb on + strand at 688.983 kb on + strand at 688.983 kb on + strand at 688.984 kb on - strand at 688.985 kb on + strand at 688.985 kb on + strand at 688.986 kb on - strand at 688.987 kb on + strand at 689.044 kb on - strand at 689.044 kb on - strand at 689.044 kb on - strand at 689.044 kb on - strand at 689.047 kb on - strand at 689.065 kb on - strand at 689.068 kb on - strand at 689.102 kb on - strand at 689.178 kb on - strand at 689.201 kb on + strand at 689.204 kb on - strand at 689.205 kb on + strand at 689.207 kb on - strand at 689.208 kb on + strand at 689.208 kb on + strand at 689.208 kb on + strand at 689.287 kb on + strand, within MMJJ_RS03685 at 689.290 kb on - strand, within MMJJ_RS03685 at 689.337 kb on - strand, within MMJJ_RS03685 at 689.342 kb on - strand, within MMJJ_RS03685 at 689.343 kb on + strand, within MMJJ_RS03685 at 689.523 kb on + strand, within MMJJ_RS03685 at 689.535 kb on - strand, within MMJJ_RS03685 at 689.548 kb on - strand, within MMJJ_RS03685 at 689.548 kb on - strand, within MMJJ_RS03685 at 689.549 kb on + strand, within MMJJ_RS03685 at 689.549 kb on + strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.581 kb on + strand, within MMJJ_RS03685 at 689.583 kb on - strand, within MMJJ_RS03685 at 689.583 kb on - strand, within MMJJ_RS03685 at 689.583 kb on - strand, within MMJJ_RS03685 at 689.584 kb on + strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.596 kb on + strand, within MMJJ_RS03685 at 689.615 kb on + strand, within MMJJ_RS03685 at 689.617 kb on + strand, within MMJJ_RS03685 at 689.617 kb on + strand, within MMJJ_RS03685 at 689.617 kb on + strand, within MMJJ_RS03685
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE remove 686,728 + MMJJ_RS03675 0.56 -0.9 686,740 - MMJJ_RS03675 0.57 -1.5 687,458 - -0.9 687,462 - -1.8 687,462 - -3.0 687,526 - -2.2 687,527 + +2.0 687,543 + -1.9 688,222 - MMJJ_RS03680 0.59 -0.9 688,262 - -0.9 688,731 - -1.5 688,736 - -1.5 688,791 - +0.9 688,812 - -0.7 688,813 + +1.1 688,813 + +1.5 688,816 - -1.2 688,824 - -2.2 688,831 - +1.8 688,832 + -1.5 688,832 + -0.5 688,833 - -0.9 688,833 - +1.6 688,834 + +1.9 688,835 - -0.9 688,835 - +2.2 688,835 - +1.5 688,835 - -0.1 688,835 - +1.5 688,835 - -2.7 688,835 - -1.3 688,836 + +2.9 688,836 + -2.0 688,836 + -2.2 688,839 - +0.7 688,858 - -2.3 688,859 + +0.4 688,862 - -3.5 688,862 - +1.6 688,863 + +1.2 688,867 + -0.8 688,867 + -0.1 688,871 - -1.0 688,871 - -1.7 688,871 - +1.0 688,872 + +1.5 688,872 + -0.7 688,872 + +1.4 688,872 + +1.2 688,872 + +0.7 688,874 - +0.8 688,875 + +1.7 688,881 - +2.4 688,882 + -2.6 688,886 - +1.1 688,897 - +0.4 688,897 - -0.2 688,908 - -2.9 688,908 - +1.2 688,937 + +0.3 688,958 + -2.2 688,973 - +0.7 688,974 + +0.9 688,977 - -2.0 688,978 + -0.5 688,978 + +1.7 688,979 - +0.8 688,980 + -2.0 688,980 + -0.9 688,982 - +1.3 688,982 - +0.2 688,982 - +1.5 688,982 - +0.7 688,982 - +1.5 688,983 + -3.2 688,983 + -1.8 688,983 + -2.6 688,984 - +0.8 688,985 + -3.5 688,985 + +1.1 688,986 - -0.9 688,987 + +1.4 689,044 - -1.8 689,044 - -1.2 689,044 - +1.3 689,044 - -1.6 689,047 - +0.7 689,065 - -0.9 689,068 - -1.7 689,102 - +0.7 689,178 - +1.2 689,201 + -2.5 689,204 - -0.9 689,205 + +1.0 689,207 - -1.7 689,208 + +1.3 689,208 + +1.4 689,208 + +0.1 689,287 + MMJJ_RS03685 0.12 -0.6 689,290 - MMJJ_RS03685 0.13 -1.6 689,337 - MMJJ_RS03685 0.15 -2.3 689,342 - MMJJ_RS03685 0.15 +1.0 689,343 + MMJJ_RS03685 0.15 -2.0 689,523 + MMJJ_RS03685 0.25 -0.9 689,535 - MMJJ_RS03685 0.26 -1.2 689,548 - MMJJ_RS03685 0.27 -2.4 689,548 - MMJJ_RS03685 0.27 +1.4 689,549 + MMJJ_RS03685 0.27 +1.3 689,549 + MMJJ_RS03685 0.27 +0.8 689,580 - MMJJ_RS03685 0.28 +2.3 689,580 - MMJJ_RS03685 0.28 +0.7 689,580 - MMJJ_RS03685 0.28 +0.4 689,580 - MMJJ_RS03685 0.28 +1.2 689,581 + MMJJ_RS03685 0.28 -2.2 689,583 - MMJJ_RS03685 0.28 -2.2 689,583 - MMJJ_RS03685 0.28 -2.0 689,583 - MMJJ_RS03685 0.28 +1.0 689,584 + MMJJ_RS03685 0.28 +1.3 689,595 - MMJJ_RS03685 0.29 -3.2 689,595 - MMJJ_RS03685 0.29 +1.1 689,595 - MMJJ_RS03685 0.29 +1.2 689,595 - MMJJ_RS03685 0.29 -1.7 689,596 + MMJJ_RS03685 0.29 +1.3 689,615 + MMJJ_RS03685 0.30 +2.1 689,617 + MMJJ_RS03685 0.30 +1.4 689,617 + MMJJ_RS03685 0.30 -2.2 689,617 + MMJJ_RS03685 0.30 +2.2
Or see this region's nucleotide sequence