Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15385

Experiment: Polygalacturonic 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15395 and HMPREF1058_RS15390 overlap by 4 nucleotidesHMPREF1058_RS15390 and HMPREF1058_RS15385 are separated by 14 nucleotidesHMPREF1058_RS15385 and HMPREF1058_RS15380 are separated by 39 nucleotidesHMPREF1058_RS15380 and HMPREF1058_RS15375 are separated by 13 nucleotides HMPREF1058_RS15395: HMPREF1058_RS15395 - dihydroorotase, at 931,688 to 933,028 _RS15395 HMPREF1058_RS15390: HMPREF1058_RS15390 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 933,025 to 933,912 _RS15390 HMPREF1058_RS15385: HMPREF1058_RS15385 - metallophosphoesterase, at 933,927 to 935,087 _RS15385 HMPREF1058_RS15380: HMPREF1058_RS15380 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 935,127 to 935,885 _RS15380 HMPREF1058_RS15375: HMPREF1058_RS15375 - DUF4369 domain-containing protein, at 935,899 to 936,597 _RS15375 Position (kb) 933 934 935 936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 933.053 kb on + strandat 933.066 kb on + strandat 933.128 kb on + strand, within HMPREF1058_RS15390at 933.129 kb on - strand, within HMPREF1058_RS15390at 933.129 kb on - strand, within HMPREF1058_RS15390at 933.456 kb on - strand, within HMPREF1058_RS15390at 933.479 kb on - strand, within HMPREF1058_RS15390at 933.611 kb on + strand, within HMPREF1058_RS15390at 933.625 kb on - strand, within HMPREF1058_RS15390at 933.644 kb on + strand, within HMPREF1058_RS15390at 933.850 kb on + strandat 933.874 kb on - strandat 933.970 kb on + strandat 933.984 kb on + strandat 933.985 kb on - strandat 933.986 kb on + strandat 933.986 kb on + strandat 933.987 kb on - strandat 933.987 kb on - strandat 933.988 kb on + strandat 933.988 kb on + strandat 933.988 kb on + strandat 933.990 kb on + strandat 933.990 kb on + strandat 933.991 kb on - strandat 933.991 kb on - strandat 933.991 kb on - strandat 933.999 kb on + strandat 934.000 kb on - strandat 934.001 kb on + strandat 934.001 kb on + strandat 934.002 kb on - strandat 934.002 kb on - strandat 934.002 kb on - strandat 934.091 kb on + strand, within HMPREF1058_RS15385at 934.205 kb on - strandat 934.206 kb on + strand, within HMPREF1058_RS15385at 934.206 kb on + strand, within HMPREF1058_RS15385at 934.206 kb on + strandat 934.208 kb on + strand, within HMPREF1058_RS15385at 934.239 kb on + strand, within HMPREF1058_RS15385at 934.239 kb on + strand, within HMPREF1058_RS15385at 934.273 kb on + strand, within HMPREF1058_RS15385at 934.276 kb on - strandat 934.279 kb on + strand, within HMPREF1058_RS15385at 934.282 kb on + strand, within HMPREF1058_RS15385at 934.282 kb on + strand, within HMPREF1058_RS15385at 934.283 kb on - strand, within HMPREF1058_RS15385at 934.284 kb on + strand, within HMPREF1058_RS15385at 934.451 kb on + strandat 934.546 kb on + strand, within HMPREF1058_RS15385at 934.546 kb on + strand, within HMPREF1058_RS15385at 934.566 kb on + strand, within HMPREF1058_RS15385at 934.601 kb on + strand, within HMPREF1058_RS15385at 934.688 kb on + strand, within HMPREF1058_RS15385at 934.705 kb on + strand, within HMPREF1058_RS15385at 934.725 kb on - strand, within HMPREF1058_RS15385at 934.725 kb on - strand, within HMPREF1058_RS15385at 934.823 kb on - strand, within HMPREF1058_RS15385at 934.879 kb on + strand, within HMPREF1058_RS15385at 934.880 kb on - strand, within HMPREF1058_RS15385at 934.973 kb on - strandat 934.973 kb on - strandat 935.100 kb on - strandat 935.137 kb on + strandat 935.139 kb on + strandat 935.139 kb on + strandat 935.146 kb on + strandat 935.147 kb on - strandat 935.182 kb on + strandat 935.196 kb on - strandat 935.196 kb on - strandat 935.196 kb on - strandat 935.196 kb on - strandat 935.203 kb on + strand, within HMPREF1058_RS15380at 935.203 kb on + strand, within HMPREF1058_RS15380at 935.204 kb on - strand, within HMPREF1058_RS15380at 935.204 kb on - strand, within HMPREF1058_RS15380at 935.204 kb on - strand, within HMPREF1058_RS15380at 935.207 kb on + strand, within HMPREF1058_RS15380at 935.207 kb on + strand, within HMPREF1058_RS15380at 935.287 kb on - strand, within HMPREF1058_RS15380at 935.287 kb on - strand, within HMPREF1058_RS15380at 935.293 kb on + strand, within HMPREF1058_RS15380at 935.297 kb on + strand, within HMPREF1058_RS15380at 935.315 kb on - strand, within HMPREF1058_RS15380at 935.346 kb on + strand, within HMPREF1058_RS15380at 935.487 kb on - strand, within HMPREF1058_RS15380at 935.488 kb on + strand, within HMPREF1058_RS15380at 935.489 kb on - strand, within HMPREF1058_RS15380at 935.489 kb on - strand, within HMPREF1058_RS15380at 935.499 kb on - strand, within HMPREF1058_RS15380at 935.530 kb on + strand, within HMPREF1058_RS15380at 935.576 kb on - strand, within HMPREF1058_RS15380at 935.621 kb on + strand, within HMPREF1058_RS15380at 935.679 kb on - strand, within HMPREF1058_RS15380at 935.679 kb on - strand, within HMPREF1058_RS15380at 935.694 kb on - strand, within HMPREF1058_RS15380at 935.697 kb on - strand, within HMPREF1058_RS15380at 935.735 kb on + strand, within HMPREF1058_RS15380at 935.749 kb on + strand, within HMPREF1058_RS15380at 935.749 kb on + strand, within HMPREF1058_RS15380at 935.750 kb on - strand, within HMPREF1058_RS15380at 935.750 kb on - strand, within HMPREF1058_RS15380at 935.753 kb on + strandat 935.754 kb on - strand, within HMPREF1058_RS15380at 935.754 kb on - strand, within HMPREF1058_RS15380at 935.883 kb on + strandat 935.901 kb on - strandat 936.074 kb on - strand, within HMPREF1058_RS15375

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 5 mg/ml (C)
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933,053 + -1.8
933,066 + -0.3
933,128 + HMPREF1058_RS15390 0.12 +2.0
933,129 - HMPREF1058_RS15390 0.12 -0.1
933,129 - HMPREF1058_RS15390 0.12 -1.1
933,456 - HMPREF1058_RS15390 0.49 -1.2
933,479 - HMPREF1058_RS15390 0.51 -1.1
933,611 + HMPREF1058_RS15390 0.66 -1.1
933,625 - HMPREF1058_RS15390 0.68 +0.4
933,644 + HMPREF1058_RS15390 0.70 -1.7
933,850 + -0.3
933,874 - -1.3
933,970 + -1.3
933,984 + -1.8
933,985 - -1.6
933,986 + -2.5
933,986 + -1.8
933,987 - -1.4
933,987 - -1.1
933,988 + -1.6
933,988 + -1.6
933,988 + -1.5
933,990 + +0.1
933,990 + -1.0
933,991 - -3.3
933,991 - -1.8
933,991 - -2.6
933,999 + -2.4
934,000 - -1.0
934,001 + -2.7
934,001 + -0.6
934,002 - -1.6
934,002 - -1.9
934,002 - -0.5
934,091 + HMPREF1058_RS15385 0.14 -1.1
934,205 - +0.9
934,206 + HMPREF1058_RS15385 0.24 -2.9
934,206 + HMPREF1058_RS15385 0.24 -1.2
934,206 + +0.1
934,208 + HMPREF1058_RS15385 0.24 -0.9
934,239 + HMPREF1058_RS15385 0.27 -0.3
934,239 + HMPREF1058_RS15385 0.27 -1.1
934,273 + HMPREF1058_RS15385 0.30 -1.5
934,276 - +1.5
934,279 + HMPREF1058_RS15385 0.30 -1.6
934,282 + HMPREF1058_RS15385 0.31 -2.1
934,282 + HMPREF1058_RS15385 0.31 -0.4
934,283 - HMPREF1058_RS15385 0.31 -0.7
934,284 + HMPREF1058_RS15385 0.31 -0.8
934,451 + -0.1
934,546 + HMPREF1058_RS15385 0.53 -0.7
934,546 + HMPREF1058_RS15385 0.53 -0.4
934,566 + HMPREF1058_RS15385 0.55 +0.9
934,601 + HMPREF1058_RS15385 0.58 -0.5
934,688 + HMPREF1058_RS15385 0.66 -3.7
934,705 + HMPREF1058_RS15385 0.67 -1.5
934,725 - HMPREF1058_RS15385 0.69 -2.7
934,725 - HMPREF1058_RS15385 0.69 -4.0
934,823 - HMPREF1058_RS15385 0.77 -1.7
934,879 + HMPREF1058_RS15385 0.82 -0.7
934,880 - HMPREF1058_RS15385 0.82 -1.4
934,973 - -2.0
934,973 - -0.9
935,100 - -0.9
935,137 + -0.5
935,139 + -1.3
935,139 + -0.3
935,146 + -1.5
935,147 - -2.8
935,182 + -2.8
935,196 - +0.5
935,196 - -2.2
935,196 - -1.3
935,196 - -1.7
935,203 + HMPREF1058_RS15380 0.10 -2.9
935,203 + HMPREF1058_RS15380 0.10 -1.8
935,204 - HMPREF1058_RS15380 0.10 -2.7
935,204 - HMPREF1058_RS15380 0.10 -0.4
935,204 - HMPREF1058_RS15380 0.10 -2.8
935,207 + HMPREF1058_RS15380 0.11 -1.2
935,207 + HMPREF1058_RS15380 0.11 -2.2
935,287 - HMPREF1058_RS15380 0.21 -0.5
935,287 - HMPREF1058_RS15380 0.21 +0.9
935,293 + HMPREF1058_RS15380 0.22 -2.8
935,297 + HMPREF1058_RS15380 0.22 -0.6
935,315 - HMPREF1058_RS15380 0.25 -1.7
935,346 + HMPREF1058_RS15380 0.29 -1.5
935,487 - HMPREF1058_RS15380 0.47 +0.5
935,488 + HMPREF1058_RS15380 0.48 -0.9
935,489 - HMPREF1058_RS15380 0.48 -2.7
935,489 - HMPREF1058_RS15380 0.48 -1.6
935,499 - HMPREF1058_RS15380 0.49 -3.3
935,530 + HMPREF1058_RS15380 0.53 -1.0
935,576 - HMPREF1058_RS15380 0.59 -1.9
935,621 + HMPREF1058_RS15380 0.65 -2.8
935,679 - HMPREF1058_RS15380 0.73 +0.1
935,679 - HMPREF1058_RS15380 0.73 -0.8
935,694 - HMPREF1058_RS15380 0.75 -1.5
935,697 - HMPREF1058_RS15380 0.75 -1.6
935,735 + HMPREF1058_RS15380 0.80 -1.7
935,749 + HMPREF1058_RS15380 0.82 -1.4
935,749 + HMPREF1058_RS15380 0.82 -2.2
935,750 - HMPREF1058_RS15380 0.82 -2.7
935,750 - HMPREF1058_RS15380 0.82 +0.6
935,753 + +1.5
935,754 - HMPREF1058_RS15380 0.83 +0.9
935,754 - HMPREF1058_RS15380 0.83 -1.8
935,883 + -0.9
935,901 - +0.9
936,074 - HMPREF1058_RS15375 0.25 -2.6

Or see this region's nucleotide sequence