Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07855

Experiment: Polygalacturonic 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Polygalacturonic 5 mg/ml (C)
115,710	+				-1.8
115,743	-				-0.2
115,750	+				-0.2
115,820	+		HMPREF1058_RS07860	0.20	-1.8
115,910	+		HMPREF1058_RS07860	0.46	-0.8
115,911	-		HMPREF1058_RS07860	0.46	-0.6
115,911	-		HMPREF1058_RS07860	0.46	-1.6
115,912	+		HMPREF1058_RS07860	0.46	+0.2
115,912	+		HMPREF1058_RS07860	0.46	-0.1
115,913	-		HMPREF1058_RS07860	0.46	-0.7
115,952	-		HMPREF1058_RS07860	0.57	-0.7
116,120	-				+0.1
116,312	+				-0.9
116,312	+				-1.2
116,313	-				-0.5
116,313	-				-0.5
116,315	+				+0.7
116,316	-				+0.5
116,316	-				+0.9
116,325	+				-1.0
116,401	-		HMPREF1058_RS20840	0.24	+0.7
116,408	-		HMPREF1058_RS20840	0.27	-0.1
116,429	+		HMPREF1058_RS20840	0.35	+0.2
116,429	+		HMPREF1058_RS20840	0.35	-0.9
116,494	-		HMPREF1058_RS20840	0.61	+1.4
116,505	+		HMPREF1058_RS20840	0.66	-0.8
116,536	+		HMPREF1058_RS20840	0.78	+1.1
116,538	+		HMPREF1058_RS20840	0.79	+0.7
116,538	+		HMPREF1058_RS20840	0.79	-0.9
116,538	+		HMPREF1058_RS20840	0.79	-0.1
116,633	-				-2.3
116,634	+				+0.6
116,635	-				-1.9
116,635	-				+1.9
116,666	-				-0.3
116,674	+				+0.2
116,676	+				-0.7
116,677	-				+0.9
116,726	-				-1.3
116,867	-		HMPREF1058_RS07855	0.17	+0.5
116,869	-		HMPREF1058_RS07855	0.17	-0.4
116,872	+		HMPREF1058_RS07855	0.18	-0.2
116,933	-		HMPREF1058_RS07855	0.23	-0.9
116,993	-		HMPREF1058_RS07855	0.29	-0.9
116,993	-		HMPREF1058_RS07855	0.29	-1.6
116,995	+		HMPREF1058_RS07855	0.29	+0.2
116,995	+		HMPREF1058_RS07855	0.29	-1.4
116,995	+		HMPREF1058_RS07855	0.29	-0.3
116,996	-		HMPREF1058_RS07855	0.29	-0.8
117,045	+		HMPREF1058_RS07855	0.34	+1.3
117,132	+		HMPREF1058_RS07855	0.41	+0.1
117,133	-		HMPREF1058_RS07855	0.42	-0.3
117,149	+		HMPREF1058_RS07855	0.43	+1.2
117,158	+		HMPREF1058_RS07855	0.44	+1.9
117,234	-		HMPREF1058_RS07855	0.51	-0.9
117,234	-		HMPREF1058_RS07855	0.51	-0.5
117,234	-		HMPREF1058_RS07855	0.51	-0.9
117,234	-		HMPREF1058_RS07855	0.51	+1.0
117,253	+		HMPREF1058_RS07855	0.53	-0.7
117,333	-		HMPREF1058_RS07855	0.60	-0.5
117,360	+		HMPREF1058_RS07855	0.62	-1.1
117,361	-		HMPREF1058_RS07855	0.62	-1.6
117,365	+		HMPREF1058_RS07855	0.63	-0.5
117,366	-		HMPREF1058_RS07855	0.63	-1.3
117,366	-		HMPREF1058_RS07855	0.63	-1.5
117,366	-		HMPREF1058_RS07855	0.63	-0.2
117,452	-		HMPREF1058_RS07855	0.71	-1.2
117,492	-		HMPREF1058_RS07855	0.74	+1.5
117,639	-		HMPREF1058_RS07855	0.88	+1.4
117,655	+		HMPREF1058_RS07855	0.89	-0.6
117,660	+		HMPREF1058_RS07855	0.90	-0.2
117,661	-		HMPREF1058_RS07855	0.90	+0.8
117,729	+				-1.5
117,732	+				-0.3
117,777	+				+0.5
117,778	-				-0.2
117,782	+				+1.9
117,852	-				+0.4
117,918	+				-1.2
117,918	+				+1.7
117,941	+				-0.4
118,018	-				+0.0
118,018	-				-1.9
118,018	-				+0.1
118,022	+				-1.1
118,023	-				-0.9
118,049	+				-0.4
118,050	-				+0.5
118,050	-				-1.9
118,052	+				-0.2
118,053	-				+1.5
118,090	+				+0.1
118,090	+				-2.1
118,090	+				+1.3
118,090	+				-0.4
118,091	-				+0.1
118,194	+				-1.1
118,194	+				+0.1
118,196	+				-0.9
118,196	+				-0.5
118,197	-				+0.3
118,200	+				-2.1
118,211	-				+0.7
118,263	+		HMPREF1058_RS07850	0.13	-1.5
118,300	+		HMPREF1058_RS07850	0.15	-0.6
118,301	-		HMPREF1058_RS07850	0.15	+0.7
118,304	+		HMPREF1058_RS07850	0.16	+0.1
118,308	+		HMPREF1058_RS07850	0.16	-0.9
118,308	+		HMPREF1058_RS07850	0.16	-0.5
118,309	-		HMPREF1058_RS07850	0.16	-0.6
118,309	-		HMPREF1058_RS07850	0.16	-0.0
118,309	-		HMPREF1058_RS07850	0.16	-0.9
118,309	-		HMPREF1058_RS07850	0.16	+1.5
118,330	+		HMPREF1058_RS07850	0.17	-1.6
118,330	+		HMPREF1058_RS07850	0.17	-0.9
118,331	-		HMPREF1058_RS07850	0.17	-0.4
118,341	+		HMPREF1058_RS07850	0.18	-1.1
118,342	-		HMPREF1058_RS07850	0.18	+0.4
118,364	+		HMPREF1058_RS07850	0.19	-1.6
118,364	+		HMPREF1058_RS07850	0.19	-1.0
118,383	-		HMPREF1058_RS07850	0.20	-0.3
118,389	+		HMPREF1058_RS07850	0.21	+0.1
118,390	-		HMPREF1058_RS07850	0.21	+0.6
118,400	+		HMPREF1058_RS07850	0.21	-0.9
118,431	-		HMPREF1058_RS07850	0.23	+0.1
118,432	+		HMPREF1058_RS07850	0.23	-1.0
118,433	-		HMPREF1058_RS07850	0.24	-0.6
118,504	-		HMPREF1058_RS07850	0.28	+0.7
118,569	+		HMPREF1058_RS07850	0.32	+0.6
118,592	-		HMPREF1058_RS07850	0.33	-0.7
118,593	+		HMPREF1058_RS07850	0.33	+0.8
118,593	+		HMPREF1058_RS07850	0.33	+0.5
118,593	+		HMPREF1058_RS07850	0.33	-2.5
118,594	-		HMPREF1058_RS07850	0.33	+0.2
118,724	+		HMPREF1058_RS07850	0.41	-0.3
118,748	-		HMPREF1058_RS07850	0.43	-2.3
118,748	-		HMPREF1058_RS07850	0.43	-0.1
118,748	-		HMPREF1058_RS07850	0.43	-0.4