Experiment: Polygalacturonic 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07325 and HMPREF1058_RS07320 are separated by 176 nucleotides HMPREF1058_RS07320 and HMPREF1058_RS07315 are separated by 65 nucleotides
HMPREF1058_RS07325: HMPREF1058_RS07325 - efflux RND transporter periplasmic adaptor subunit, at 261,551 to 262,618
_RS07325
HMPREF1058_RS07320: HMPREF1058_RS07320 - AraC family transcriptional regulator, at 262,795 to 263,673
_RS07320
HMPREF1058_RS07315: HMPREF1058_RS07315 - TIGR02757 family protein, at 263,739 to 264,503
_RS07315
Position (kb) 262
263
264 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 261.891 kb on - strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.909 kb on + strand, within HMPREF1058_RS07325 at 261.910 kb on - strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.911 kb on + strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.912 kb on - strand, within HMPREF1058_RS07325 at 261.948 kb on - strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.996 kb on + strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 261.997 kb on - strand, within HMPREF1058_RS07325 at 262.021 kb on + strand, within HMPREF1058_RS07325 at 262.183 kb on + strand, within HMPREF1058_RS07325 at 262.464 kb on - strand, within HMPREF1058_RS07325 at 262.589 kb on - strand at 262.619 kb on - strand at 262.619 kb on - strand at 262.619 kb on - strand at 262.642 kb on - strand at 262.719 kb on - strand at 262.750 kb on - strand at 262.942 kb on - strand, within HMPREF1058_RS07320 at 262.972 kb on + strand, within HMPREF1058_RS07320 at 262.973 kb on - strand, within HMPREF1058_RS07320 at 262.973 kb on - strand, within HMPREF1058_RS07320 at 262.978 kb on + strand, within HMPREF1058_RS07320 at 262.979 kb on - strand, within HMPREF1058_RS07320 at 262.979 kb on - strand, within HMPREF1058_RS07320 at 262.990 kb on - strand, within HMPREF1058_RS07320 at 263.051 kb on + strand, within HMPREF1058_RS07320 at 263.057 kb on - strand, within HMPREF1058_RS07320 at 263.124 kb on + strand, within HMPREF1058_RS07320 at 263.276 kb on - strand, within HMPREF1058_RS07320 at 263.289 kb on + strand, within HMPREF1058_RS07320 at 263.290 kb on - strand at 263.290 kb on - strand, within HMPREF1058_RS07320 at 263.294 kb on - strand, within HMPREF1058_RS07320 at 263.294 kb on - strand, within HMPREF1058_RS07320 at 263.404 kb on + strand, within HMPREF1058_RS07320 at 263.408 kb on - strand, within HMPREF1058_RS07320 at 263.600 kb on - strand at 263.612 kb on - strand at 263.638 kb on - strand at 263.697 kb on - strand at 263.701 kb on + strand at 263.702 kb on - strand at 263.704 kb on + strand at 263.705 kb on - strand at 263.706 kb on + strand at 263.735 kb on - strand at 263.775 kb on + strand at 263.775 kb on + strand at 263.836 kb on - strand, within HMPREF1058_RS07315 at 263.852 kb on + strand, within HMPREF1058_RS07315 at 263.949 kb on - strand, within HMPREF1058_RS07315 at 264.126 kb on - strand, within HMPREF1058_RS07315 at 264.129 kb on - strand, within HMPREF1058_RS07315 at 264.129 kb on - strand, within HMPREF1058_RS07315 at 264.130 kb on + strand, within HMPREF1058_RS07315 at 264.130 kb on + strand, within HMPREF1058_RS07315 at 264.131 kb on - strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.132 kb on + strand, within HMPREF1058_RS07315 at 264.133 kb on - strand, within HMPREF1058_RS07315 at 264.133 kb on - strand, within HMPREF1058_RS07315 at 264.134 kb on + strand, within HMPREF1058_RS07315 at 264.134 kb on + strand, within HMPREF1058_RS07315 at 264.137 kb on + strand, within HMPREF1058_RS07315 at 264.138 kb on - strand at 264.386 kb on + strand, within HMPREF1058_RS07315 at 264.395 kb on + strand, within HMPREF1058_RS07315 at 264.508 kb on + strand at 264.508 kb on + strand at 264.509 kb on - strand at 264.509 kb on - strand at 264.509 kb on - strand at 264.652 kb on + strand at 264.659 kb on - strand at 264.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 5 mg/ml (C) remove 261,891 - HMPREF1058_RS07325 0.32 -0.0 261,909 + HMPREF1058_RS07325 0.34 -1.2 261,909 + HMPREF1058_RS07325 0.34 -1.6 261,910 - HMPREF1058_RS07325 0.34 -2.0 261,911 + HMPREF1058_RS07325 0.34 -3.2 261,911 + HMPREF1058_RS07325 0.34 -3.6 261,912 - HMPREF1058_RS07325 0.34 -1.5 261,912 - HMPREF1058_RS07325 0.34 -1.7 261,912 - HMPREF1058_RS07325 0.34 -2.4 261,948 - HMPREF1058_RS07325 0.37 -3.1 261,996 + HMPREF1058_RS07325 0.42 +0.2 261,996 + HMPREF1058_RS07325 0.42 -2.1 261,997 - HMPREF1058_RS07325 0.42 -0.6 261,997 - HMPREF1058_RS07325 0.42 -3.0 261,997 - HMPREF1058_RS07325 0.42 -3.2 262,021 + HMPREF1058_RS07325 0.44 -2.5 262,183 + HMPREF1058_RS07325 0.59 -1.8 262,464 - HMPREF1058_RS07325 0.85 -2.5 262,589 - +0.2 262,619 - -1.7 262,619 - +0.5 262,619 - -4.4 262,642 - +0.7 262,719 - +0.8 262,750 - -0.0 262,942 - HMPREF1058_RS07320 0.17 +0.6 262,972 + HMPREF1058_RS07320 0.20 -1.3 262,973 - HMPREF1058_RS07320 0.20 -1.1 262,973 - HMPREF1058_RS07320 0.20 -1.2 262,978 + HMPREF1058_RS07320 0.21 -3.1 262,979 - HMPREF1058_RS07320 0.21 -0.2 262,979 - HMPREF1058_RS07320 0.21 +1.0 262,990 - HMPREF1058_RS07320 0.22 -0.6 263,051 + HMPREF1058_RS07320 0.29 -2.9 263,057 - HMPREF1058_RS07320 0.30 -0.9 263,124 + HMPREF1058_RS07320 0.37 -2.7 263,276 - HMPREF1058_RS07320 0.55 -2.0 263,289 + HMPREF1058_RS07320 0.56 -0.3 263,290 - -0.2 263,290 - HMPREF1058_RS07320 0.56 -2.0 263,294 - HMPREF1058_RS07320 0.57 +1.0 263,294 - HMPREF1058_RS07320 0.57 -3.6 263,404 + HMPREF1058_RS07320 0.69 -0.7 263,408 - HMPREF1058_RS07320 0.70 -1.2 263,600 - -2.5 263,612 - -2.1 263,638 - -3.6 263,697 - +0.2 263,701 + -0.8 263,702 - -0.2 263,704 + +0.5 263,705 - +0.3 263,706 + -0.3 263,735 - -1.1 263,775 + +0.4 263,775 + -2.4 263,836 - HMPREF1058_RS07315 0.13 +0.5 263,852 + HMPREF1058_RS07315 0.15 -0.1 263,949 - HMPREF1058_RS07315 0.27 -1.5 264,126 - HMPREF1058_RS07315 0.51 +0.6 264,129 - HMPREF1058_RS07315 0.51 +0.8 264,129 - HMPREF1058_RS07315 0.51 -0.8 264,130 + HMPREF1058_RS07315 0.51 +0.7 264,130 + HMPREF1058_RS07315 0.51 +2.6 264,131 - HMPREF1058_RS07315 0.51 -1.4 264,132 + HMPREF1058_RS07315 0.51 -0.3 264,132 + HMPREF1058_RS07315 0.51 +1.4 264,132 + HMPREF1058_RS07315 0.51 +0.3 264,133 - HMPREF1058_RS07315 0.52 -0.2 264,133 - HMPREF1058_RS07315 0.52 -1.0 264,134 + HMPREF1058_RS07315 0.52 -0.2 264,134 + HMPREF1058_RS07315 0.52 -1.0 264,137 + HMPREF1058_RS07315 0.52 -0.5 264,138 - +1.6 264,386 + HMPREF1058_RS07315 0.85 +0.7 264,395 + HMPREF1058_RS07315 0.86 +1.0 264,508 + +0.3 264,508 + +0.9 264,509 - +0.1 264,509 - -0.4 264,509 - +0.5 264,652 + +3.1 264,659 - +1.6 264,663 + -1.3
Or see this region's nucleotide sequence