Experiment: Polygalacturonic 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06745 and HMPREF1058_RS06740 are separated by 612 nucleotides HMPREF1058_RS06740 and HMPREF1058_RS06735 overlap by 14 nucleotides HMPREF1058_RS06735 and HMPREF1058_RS06730 are separated by 13 nucleotides
HMPREF1058_RS06745: HMPREF1058_RS06745 - glycosyltransferase family 2 protein, at 406,034 to 406,984
_RS06745
HMPREF1058_RS06740: HMPREF1058_RS06740 - glycosyltransferase, at 407,597 to 408,778
_RS06740
HMPREF1058_RS06735: HMPREF1058_RS06735 - ABC transporter permease, at 408,765 to 409,628
_RS06735
HMPREF1058_RS06730: HMPREF1058_RS06730 - ABC transporter ATP-binding protein, at 409,642 to 410,913
_RS06730
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 406.622 kb on + strand, within HMPREF1058_RS06745 at 406.622 kb on + strand, within HMPREF1058_RS06745 at 406.632 kb on + strand, within HMPREF1058_RS06745 at 406.659 kb on + strand, within HMPREF1058_RS06745 at 406.673 kb on - strand, within HMPREF1058_RS06745 at 406.675 kb on + strand, within HMPREF1058_RS06745 at 406.675 kb on + strand, within HMPREF1058_RS06745 at 406.761 kb on + strand, within HMPREF1058_RS06745 at 406.802 kb on - strand, within HMPREF1058_RS06745 at 407.033 kb on - strand at 407.088 kb on - strand at 407.171 kb on + strand at 407.219 kb on + strand at 407.250 kb on - strand at 407.462 kb on + strand at 407.463 kb on - strand at 407.463 kb on - strand at 407.466 kb on + strand at 407.466 kb on + strand at 407.466 kb on + strand at 407.467 kb on - strand at 407.484 kb on + strand at 407.484 kb on + strand at 407.484 kb on + strand at 407.485 kb on - strand at 407.489 kb on - strand at 407.517 kb on + strand at 407.517 kb on + strand at 407.518 kb on - strand at 407.518 kb on - strand at 407.643 kb on + strand at 407.720 kb on - strand, within HMPREF1058_RS06740 at 407.735 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.834 kb on - strand, within HMPREF1058_RS06740 at 407.874 kb on - strand, within HMPREF1058_RS06740 at 407.925 kb on + strand, within HMPREF1058_RS06740 at 407.946 kb on + strand, within HMPREF1058_RS06740 at 407.947 kb on - strand, within HMPREF1058_RS06740 at 408.039 kb on - strand, within HMPREF1058_RS06740 at 408.068 kb on + strand, within HMPREF1058_RS06740 at 408.069 kb on - strand, within HMPREF1058_RS06740 at 408.132 kb on + strand, within HMPREF1058_RS06740 at 408.133 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.399 kb on - strand, within HMPREF1058_RS06740 at 408.455 kb on + strand, within HMPREF1058_RS06740 at 408.473 kb on + strand, within HMPREF1058_RS06740 at 408.473 kb on + strand, within HMPREF1058_RS06740 at 408.622 kb on - strand, within HMPREF1058_RS06740 at 408.647 kb on + strand, within HMPREF1058_RS06740 at 408.650 kb on - strand, within HMPREF1058_RS06740 at 408.685 kb on + strand at 408.706 kb on + strand at 408.707 kb on - strand at 408.717 kb on + strand at 408.718 kb on - strand at 408.718 kb on - strand at 408.869 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.916 kb on + strand, within HMPREF1058_RS06735 at 408.917 kb on - strand, within HMPREF1058_RS06735 at 408.950 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.070 kb on - strand, within HMPREF1058_RS06735 at 409.157 kb on + strand, within HMPREF1058_RS06735 at 409.158 kb on - strand, within HMPREF1058_RS06735 at 409.444 kb on - strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.537 kb on + strand, within HMPREF1058_RS06735 at 409.545 kb on - strand at 409.545 kb on - strand at 409.556 kb on + strand at 409.557 kb on - strand at 409.557 kb on - strand at 409.593 kb on - strand at 409.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 5 mg/ml (C) remove 406,622 + HMPREF1058_RS06745 0.62 +2.3 406,622 + HMPREF1058_RS06745 0.62 +0.3 406,632 + HMPREF1058_RS06745 0.63 -0.6 406,659 + HMPREF1058_RS06745 0.66 +0.1 406,673 - HMPREF1058_RS06745 0.67 -1.2 406,675 + HMPREF1058_RS06745 0.67 +0.3 406,675 + HMPREF1058_RS06745 0.67 -1.0 406,761 + HMPREF1058_RS06745 0.76 -1.5 406,802 - HMPREF1058_RS06745 0.81 +0.4 407,033 - +0.8 407,088 - -1.8 407,171 + +0.5 407,219 + -1.2 407,250 - -0.1 407,462 + +1.1 407,463 - +0.9 407,463 - -1.9 407,466 + -0.9 407,466 + -1.0 407,466 + -3.0 407,467 - +0.6 407,484 + -0.8 407,484 + -1.9 407,484 + +0.7 407,485 - +0.1 407,489 - -1.3 407,517 + -1.0 407,517 + +0.3 407,518 - +0.2 407,518 - -1.1 407,643 + +3.4 407,720 - HMPREF1058_RS06740 0.10 +3.6 407,735 + HMPREF1058_RS06740 0.12 +4.2 407,833 + HMPREF1058_RS06740 0.20 +4.1 407,833 + HMPREF1058_RS06740 0.20 +2.3 407,833 + HMPREF1058_RS06740 0.20 +1.2 407,834 - HMPREF1058_RS06740 0.20 +1.9 407,874 - HMPREF1058_RS06740 0.23 +3.9 407,925 + HMPREF1058_RS06740 0.28 +0.3 407,946 + HMPREF1058_RS06740 0.30 +1.6 407,947 - HMPREF1058_RS06740 0.30 +2.7 408,039 - HMPREF1058_RS06740 0.37 +0.6 408,068 + HMPREF1058_RS06740 0.40 +2.8 408,069 - HMPREF1058_RS06740 0.40 +2.7 408,132 + HMPREF1058_RS06740 0.45 +2.1 408,133 - HMPREF1058_RS06740 0.45 +2.7 408,192 - HMPREF1058_RS06740 0.50 +2.5 408,192 - HMPREF1058_RS06740 0.50 +3.3 408,192 - HMPREF1058_RS06740 0.50 +2.9 408,399 - HMPREF1058_RS06740 0.68 -1.5 408,455 + HMPREF1058_RS06740 0.73 +2.0 408,473 + HMPREF1058_RS06740 0.74 +5.3 408,473 + HMPREF1058_RS06740 0.74 +4.1 408,622 - HMPREF1058_RS06740 0.87 +3.4 408,647 + HMPREF1058_RS06740 0.89 -1.1 408,650 - HMPREF1058_RS06740 0.89 +2.8 408,685 + -1.9 408,706 + -0.5 408,707 - +4.1 408,717 + +0.3 408,718 - +2.0 408,718 - +0.0 408,869 - HMPREF1058_RS06735 0.12 +2.1 408,874 - HMPREF1058_RS06735 0.13 +1.4 408,874 - HMPREF1058_RS06735 0.13 +1.9 408,916 + HMPREF1058_RS06735 0.17 -0.7 408,917 - HMPREF1058_RS06735 0.18 +2.7 408,950 + HMPREF1058_RS06735 0.21 +1.5 409,053 + HMPREF1058_RS06735 0.33 +1.8 409,053 + HMPREF1058_RS06735 0.33 +0.3 409,070 - HMPREF1058_RS06735 0.35 +1.2 409,157 + HMPREF1058_RS06735 0.45 +4.7 409,158 - HMPREF1058_RS06735 0.45 +0.9 409,444 - HMPREF1058_RS06735 0.79 +3.1 409,445 + HMPREF1058_RS06735 0.79 +0.2 409,445 + HMPREF1058_RS06735 0.79 +3.1 409,446 - HMPREF1058_RS06735 0.79 +3.3 409,446 - HMPREF1058_RS06735 0.79 +0.9 409,537 + HMPREF1058_RS06735 0.89 -0.3 409,545 - +3.0 409,545 - +2.3 409,556 + +3.0 409,557 - +2.7 409,557 - +0.3 409,593 - +2.5 409,684 + +1.5
Or see this region's nucleotide sequence