Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04889

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04888 and H281DRAFT_04889 are separated by 59 nucleotidesH281DRAFT_04889 and H281DRAFT_04890 are separated by 76 nucleotides H281DRAFT_04888: H281DRAFT_04888 - protein of unknown function (DUF4118), at 33,012 to 34,415 _04888 H281DRAFT_04889: H281DRAFT_04889 - hypothetical protein, at 34,475 to 35,026 _04889 H281DRAFT_04890: H281DRAFT_04890 - Tetratricopeptide repeat-containing protein, at 35,103 to 38,999 _04890 Position (kb) 34 35 36Strain fitness (log2 ratio) -1 0 1at 33.828 kb on - strand, within H281DRAFT_04888at 33.941 kb on - strand, within H281DRAFT_04888at 33.953 kb on + strand, within H281DRAFT_04888at 33.954 kb on - strand, within H281DRAFT_04888at 34.023 kb on - strand, within H281DRAFT_04888at 34.656 kb on + strand, within H281DRAFT_04889at 34.689 kb on + strand, within H281DRAFT_04889at 35.070 kb on - strandat 35.250 kb on + strandat 35.302 kb on + strandat 35.303 kb on - strandat 35.352 kb on - strandat 35.353 kb on + strandat 35.618 kb on - strand, within H281DRAFT_04890at 35.830 kb on + strand, within H281DRAFT_04890at 35.831 kb on - strand, within H281DRAFT_04890at 35.972 kb on - strand, within H281DRAFT_04890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
33,828 - H281DRAFT_04888 0.58 +0.5
33,941 - H281DRAFT_04888 0.66 +0.1
33,953 + H281DRAFT_04888 0.67 +0.2
33,954 - H281DRAFT_04888 0.67 +0.1
34,023 - H281DRAFT_04888 0.72 -0.5
34,656 + H281DRAFT_04889 0.33 -0.5
34,689 + H281DRAFT_04889 0.39 -0.9
35,070 - +0.3
35,250 + -0.5
35,302 + -0.4
35,303 - +0.3
35,352 - +0.1
35,353 + +0.0
35,618 - H281DRAFT_04890 0.13 -0.1
35,830 + H281DRAFT_04890 0.19 +0.6
35,831 - H281DRAFT_04890 0.19 -0.8
35,972 - H281DRAFT_04890 0.22 -0.6

Or see this region's nucleotide sequence