Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04798

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04797 and H281DRAFT_04798 are separated by 602 nucleotidesH281DRAFT_04798 and H281DRAFT_04799 are separated by 102 nucleotides H281DRAFT_04797: H281DRAFT_04797 - tyrosine-protein kinase Etk/Wzc, at 225,575 to 227,827 _04797 H281DRAFT_04798: H281DRAFT_04798 - Predicted xylanase/chitin deacetylase, at 228,430 to 229,359 _04798 H281DRAFT_04799: H281DRAFT_04799 - parallel beta-helix repeat (two copies), at 229,462 to 231,264 _04799 Position (kb) 228 229 230Strain fitness (log2 ratio) -1 0 1at 227.489 kb on + strand, within H281DRAFT_04797at 227.493 kb on + strand, within H281DRAFT_04797at 227.530 kb on + strand, within H281DRAFT_04797at 227.637 kb on - strandat 227.917 kb on + strandat 228.196 kb on + strandat 228.261 kb on + strandat 228.262 kb on - strandat 228.267 kb on - strandat 228.738 kb on + strand, within H281DRAFT_04798at 228.943 kb on + strand, within H281DRAFT_04798at 229.085 kb on - strand, within H281DRAFT_04798at 229.440 kb on - strandat 229.569 kb on + strandat 229.673 kb on + strand, within H281DRAFT_04799at 230.038 kb on - strand, within H281DRAFT_04799at 230.084 kb on - strand, within H281DRAFT_04799

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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227,489 + H281DRAFT_04797 0.85 -0.3
227,493 + H281DRAFT_04797 0.85 +0.3
227,530 + H281DRAFT_04797 0.87 -0.2
227,637 - +0.8
227,917 + +0.0
228,196 + +0.8
228,261 + +0.0
228,262 - -0.2
228,267 - -1.1
228,738 + H281DRAFT_04798 0.33 +1.2
228,943 + H281DRAFT_04798 0.55 +0.2
229,085 - H281DRAFT_04798 0.70 -0.2
229,440 - +0.3
229,569 + +0.3
229,673 + H281DRAFT_04799 0.12 +0.5
230,038 - H281DRAFT_04799 0.32 -0.3
230,084 - H281DRAFT_04799 0.34 +0.1

Or see this region's nucleotide sequence