Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01995

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01994 and H281DRAFT_01995 are separated by 73 nucleotidesH281DRAFT_01995 and H281DRAFT_01996 are separated by 326 nucleotides H281DRAFT_01994: H281DRAFT_01994 - cytochrome c oxidase subunit 2, at 112,384 to 114,018 _01994 H281DRAFT_01995: H281DRAFT_01995 - Uncharacterized membrane protein, at 114,092 to 114,565 _01995 H281DRAFT_01996: H281DRAFT_01996 - malonyl-CoA O-methyltransferase, at 114,892 to 115,857 _01996 Position (kb) 114 115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 113.105 kb on + strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.106 kb on - strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.144 kb on + strand, within H281DRAFT_01994at 113.145 kb on - strand, within H281DRAFT_01994at 113.375 kb on + strand, within H281DRAFT_01994at 113.376 kb on - strand, within H281DRAFT_01994at 113.465 kb on + strand, within H281DRAFT_01994at 113.465 kb on + strand, within H281DRAFT_01994at 113.465 kb on + strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.469 kb on + strand, within H281DRAFT_01994at 113.469 kb on + strand, within H281DRAFT_01994at 113.558 kb on + strand, within H281DRAFT_01994at 113.558 kb on + strand, within H281DRAFT_01994at 113.558 kb on + strand, within H281DRAFT_01994at 113.559 kb on - strand, within H281DRAFT_01994at 113.772 kb on - strand, within H281DRAFT_01994at 113.840 kb on + strand, within H281DRAFT_01994at 113.840 kb on + strand, within H281DRAFT_01994at 113.841 kb on - strand, within H281DRAFT_01994at 113.994 kb on + strandat 113.995 kb on - strandat 114.112 kb on + strandat 114.113 kb on - strandat 114.113 kb on - strandat 114.113 kb on - strandat 114.291 kb on - strand, within H281DRAFT_01995at 114.291 kb on - strand, within H281DRAFT_01995at 114.291 kb on - strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.648 kb on - strandat 114.751 kb on - strandat 114.869 kb on + strandat 114.869 kb on + strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.885 kb on + strandat 114.886 kb on - strandat 114.886 kb on - strandat 114.886 kb on - strandat 114.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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113,105 + H281DRAFT_01994 0.44 -1.9
113,105 + H281DRAFT_01994 0.44 -0.8
113,105 + H281DRAFT_01994 0.44 -2.2
113,106 - H281DRAFT_01994 0.44 +0.5
113,142 + H281DRAFT_01994 0.46 -1.0
113,142 + H281DRAFT_01994 0.46 -1.4
113,142 + H281DRAFT_01994 0.46 -0.3
113,143 - H281DRAFT_01994 0.46 +0.3
113,143 - H281DRAFT_01994 0.46 +0.2
113,143 - H281DRAFT_01994 0.46 -0.0
113,144 + H281DRAFT_01994 0.46 -0.0
113,145 - H281DRAFT_01994 0.47 -1.1
113,375 + H281DRAFT_01994 0.61 -1.6
113,376 - H281DRAFT_01994 0.61 -0.3
113,465 + H281DRAFT_01994 0.66 -2.1
113,465 + H281DRAFT_01994 0.66 -2.4
113,465 + H281DRAFT_01994 0.66 -1.6
113,466 - H281DRAFT_01994 0.66 -1.1
113,466 - H281DRAFT_01994 0.66 -2.2
113,466 - H281DRAFT_01994 0.66 -1.7
113,466 - H281DRAFT_01994 0.66 -1.2
113,469 + H281DRAFT_01994 0.66 -1.9
113,469 + H281DRAFT_01994 0.66 -2.1
113,558 + H281DRAFT_01994 0.72 -1.5
113,558 + H281DRAFT_01994 0.72 -1.8
113,558 + H281DRAFT_01994 0.72 -3.8
113,559 - H281DRAFT_01994 0.72 -1.1
113,772 - H281DRAFT_01994 0.85 -1.4
113,840 + H281DRAFT_01994 0.89 -1.1
113,840 + H281DRAFT_01994 0.89 -0.2
113,841 - H281DRAFT_01994 0.89 -1.5
113,994 + +0.8
113,995 - +0.1
114,112 + -1.3
114,113 - +1.8
114,113 - -0.6
114,113 - +0.1
114,291 - H281DRAFT_01995 0.42 -0.1
114,291 - H281DRAFT_01995 0.42 +0.5
114,291 - H281DRAFT_01995 0.42 +0.2
114,345 + H281DRAFT_01995 0.53 -3.0
114,345 + H281DRAFT_01995 0.53 -1.5
114,345 + H281DRAFT_01995 0.53 -1.5
114,345 + H281DRAFT_01995 0.53 -0.3
114,346 - H281DRAFT_01995 0.54 +0.1
114,346 - H281DRAFT_01995 0.54 -0.5
114,346 - H281DRAFT_01995 0.54 +0.1
114,346 - H281DRAFT_01995 0.54 -0.8
114,346 - H281DRAFT_01995 0.54 +0.2
114,346 - H281DRAFT_01995 0.54 +0.1
114,465 + H281DRAFT_01995 0.79 -2.6
114,465 + H281DRAFT_01995 0.79 -0.3
114,465 + H281DRAFT_01995 0.79 -1.1
114,465 + H281DRAFT_01995 0.79 -0.7
114,466 - H281DRAFT_01995 0.79 +0.5
114,466 - H281DRAFT_01995 0.79 +0.8
114,466 - H281DRAFT_01995 0.79 -0.5
114,466 - H281DRAFT_01995 0.79 +0.2
114,466 - H281DRAFT_01995 0.79 +0.5
114,466 - H281DRAFT_01995 0.79 +0.3
114,648 - +0.5
114,751 - +0.3
114,869 + +0.1
114,869 + +0.5
114,870 - +0.7
114,870 - -0.5
114,870 - +0.2
114,870 - +0.6
114,885 + +0.7
114,886 - -1.9
114,886 - -0.3
114,886 - +0.6
114,886 - +0.7

Or see this region's nucleotide sequence