Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00931

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00929 and H281DRAFT_00930 are separated by 93 nucleotidesH281DRAFT_00930 and H281DRAFT_00931 are separated by 70 nucleotidesH281DRAFT_00931 and H281DRAFT_00932 are separated by 46 nucleotidesH281DRAFT_00932 and H281DRAFT_00933 are separated by 176 nucleotides H281DRAFT_00929: H281DRAFT_00929 - DNA polymerase III, delta prime subunit, at 1,032,813 to 1,033,847 _00929 H281DRAFT_00930: H281DRAFT_00930 - phosphinothricin acetyltransferase, at 1,033,941 to 1,034,465 _00930 H281DRAFT_00931: H281DRAFT_00931 - TatD DNase family protein, at 1,034,536 to 1,035,330 _00931 H281DRAFT_00932: H281DRAFT_00932 - hypothetical protein, at 1,035,377 to 1,036,117 _00932 H281DRAFT_00933: H281DRAFT_00933 - hypothetical protein, at 1,036,294 to 1,036,650 _00933 Position (kb) 1034 1035 1036Strain fitness (log2 ratio) -1 0 1at 1033.903 kb on - strandat 1033.998 kb on + strand, within H281DRAFT_00930at 1034.053 kb on + strand, within H281DRAFT_00930at 1034.053 kb on + strand, within H281DRAFT_00930at 1034.104 kb on + strand, within H281DRAFT_00930at 1034.114 kb on - strand, within H281DRAFT_00930at 1034.114 kb on - strand, within H281DRAFT_00930at 1034.114 kb on - strand, within H281DRAFT_00930at 1034.169 kb on + strand, within H281DRAFT_00930at 1034.207 kb on + strand, within H281DRAFT_00930at 1034.207 kb on + strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.212 kb on - strand, within H281DRAFT_00930at 1034.608 kb on - strandat 1034.704 kb on + strand, within H281DRAFT_00931at 1034.821 kb on + strand, within H281DRAFT_00931at 1034.822 kb on - strand, within H281DRAFT_00931at 1034.822 kb on - strand, within H281DRAFT_00931at 1034.929 kb on - strand, within H281DRAFT_00931at 1034.955 kb on - strand, within H281DRAFT_00931at 1035.055 kb on + strand, within H281DRAFT_00931at 1035.056 kb on - strand, within H281DRAFT_00931at 1035.193 kb on - strand, within H281DRAFT_00931at 1035.193 kb on - strand, within H281DRAFT_00931at 1035.205 kb on + strand, within H281DRAFT_00931at 1035.215 kb on - strand, within H281DRAFT_00931at 1035.366 kb on + strandat 1035.392 kb on - strandat 1035.392 kb on - strandat 1035.846 kb on - strand, within H281DRAFT_00932at 1036.055 kb on + strandat 1036.055 kb on + strandat 1036.056 kb on - strandat 1036.057 kb on + strandat 1036.057 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,033,903 - +0.9
1,033,998 + H281DRAFT_00930 0.11 +0.9
1,034,053 + H281DRAFT_00930 0.21 +0.1
1,034,053 + H281DRAFT_00930 0.21 +0.1
1,034,104 + H281DRAFT_00930 0.31 +0.2
1,034,114 - H281DRAFT_00930 0.33 -0.5
1,034,114 - H281DRAFT_00930 0.33 -0.6
1,034,114 - H281DRAFT_00930 0.33 -1.1
1,034,169 + H281DRAFT_00930 0.43 +0.2
1,034,207 + H281DRAFT_00930 0.51 +0.4
1,034,207 + H281DRAFT_00930 0.51 -0.3
1,034,212 - H281DRAFT_00930 0.52 -0.3
1,034,212 - H281DRAFT_00930 0.52 -0.1
1,034,212 - H281DRAFT_00930 0.52 -1.0
1,034,212 - H281DRAFT_00930 0.52 +0.4
1,034,608 - -0.7
1,034,704 + H281DRAFT_00931 0.21 +0.1
1,034,821 + H281DRAFT_00931 0.36 -0.8
1,034,822 - H281DRAFT_00931 0.36 +0.0
1,034,822 - H281DRAFT_00931 0.36 -1.0
1,034,929 - H281DRAFT_00931 0.49 -0.7
1,034,955 - H281DRAFT_00931 0.53 -0.5
1,035,055 + H281DRAFT_00931 0.65 +0.8
1,035,056 - H281DRAFT_00931 0.65 +0.4
1,035,193 - H281DRAFT_00931 0.83 -0.3
1,035,193 - H281DRAFT_00931 0.83 +0.7
1,035,205 + H281DRAFT_00931 0.84 +0.7
1,035,215 - H281DRAFT_00931 0.85 -0.2
1,035,366 + +0.7
1,035,392 - -1.3
1,035,392 - +0.2
1,035,846 - H281DRAFT_00932 0.63 -0.1
1,036,055 + +0.1
1,036,055 + +0.2
1,036,056 - -0.3
1,036,057 + -0.4
1,036,057 + +0.1

Or see this region's nucleotide sequence