Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00852 and H281DRAFT_00853 are separated by 201 nucleotides H281DRAFT_00853 and H281DRAFT_00854 are separated by 129 nucleotides H281DRAFT_00854 and H281DRAFT_00855 are separated by 241 nucleotides
H281DRAFT_00852: H281DRAFT_00852 - acetyl-CoA acetyltransferase, at 942,242 to 943,423
_00852
H281DRAFT_00853: H281DRAFT_00853 - 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase, at 943,625 to 944,365
_00853
H281DRAFT_00854: H281DRAFT_00854 - polyhydroxyalkanoate synthesis repressor PhaR, at 944,495 to 945,118
_00854
H281DRAFT_00855: H281DRAFT_00855 - SSU ribosomal protein S12P methylthiotransferase, at 945,360 to 946,751
_00855
Position (kb) 943
944
945 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 942.696 kb on - strand, within H281DRAFT_00852 at 942.696 kb on - strand, within H281DRAFT_00852 at 942.696 kb on - strand, within H281DRAFT_00852 at 942.696 kb on - strand, within H281DRAFT_00852 at 942.705 kb on - strand, within H281DRAFT_00852 at 943.076 kb on + strand, within H281DRAFT_00852 at 943.222 kb on - strand, within H281DRAFT_00852 at 943.222 kb on - strand, within H281DRAFT_00852 at 943.225 kb on + strand, within H281DRAFT_00852 at 943.225 kb on + strand, within H281DRAFT_00852 at 943.225 kb on + strand at 943.226 kb on - strand, within H281DRAFT_00852 at 943.226 kb on - strand, within H281DRAFT_00852 at 943.378 kb on + strand at 943.378 kb on + strand at 943.379 kb on - strand at 943.510 kb on + strand at 943.510 kb on + strand at 943.644 kb on - strand at 943.644 kb on - strand at 943.644 kb on - strand at 943.647 kb on + strand at 943.648 kb on - strand at 943.707 kb on - strand, within H281DRAFT_00853 at 943.707 kb on - strand, within H281DRAFT_00853 at 944.473 kb on + strand at 944.473 kb on + strand at 944.492 kb on + strand at 944.493 kb on - strand at 944.500 kb on + strand at 944.500 kb on + strand at 944.501 kb on - strand at 944.501 kb on - strand at 944.503 kb on + strand at 944.503 kb on + strand at 944.504 kb on - strand at 944.504 kb on - strand at 944.504 kb on - strand at 944.506 kb on + strand at 944.558 kb on + strand, within H281DRAFT_00854 at 944.559 kb on - strand, within H281DRAFT_00854 at 944.579 kb on + strand, within H281DRAFT_00854 at 944.580 kb on - strand, within H281DRAFT_00854 at 944.580 kb on - strand, within H281DRAFT_00854 at 944.789 kb on + strand, within H281DRAFT_00854 at 944.789 kb on + strand, within H281DRAFT_00854 at 944.789 kb on + strand, within H281DRAFT_00854 at 944.790 kb on - strand, within H281DRAFT_00854 at 944.790 kb on - strand, within H281DRAFT_00854 at 944.858 kb on + strand, within H281DRAFT_00854 at 944.942 kb on + strand, within H281DRAFT_00854 at 944.943 kb on - strand, within H281DRAFT_00854 at 945.230 kb on - strand at 945.345 kb on - strand at 945.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 942,696 - H281DRAFT_00852 0.38 -2.9 942,696 - H281DRAFT_00852 0.38 -2.5 942,696 - H281DRAFT_00852 0.38 -3.1 942,696 - H281DRAFT_00852 0.38 -2.8 942,705 - H281DRAFT_00852 0.39 -2.2 943,076 + H281DRAFT_00852 0.71 -0.1 943,222 - H281DRAFT_00852 0.83 -2.8 943,222 - H281DRAFT_00852 0.83 -3.1 943,225 + H281DRAFT_00852 0.83 +1.2 943,225 + H281DRAFT_00852 0.83 +0.6 943,225 + +0.5 943,226 - H281DRAFT_00852 0.83 -3.9 943,226 - H281DRAFT_00852 0.83 -2.4 943,378 + +1.1 943,378 + +0.6 943,379 - -4.2 943,510 + +0.0 943,510 + +1.6 943,644 - -1.1 943,644 - -2.3 943,644 - -2.2 943,647 + -0.3 943,648 - -0.1 943,707 - H281DRAFT_00853 0.11 -3.7 943,707 - H281DRAFT_00853 0.11 -1.8 944,473 + +0.9 944,473 + -0.5 944,492 + -0.3 944,493 - -1.5 944,500 + -2.5 944,500 + -0.9 944,501 - -2.3 944,501 - -2.6 944,503 + -2.9 944,503 + -0.6 944,504 - -2.9 944,504 - -2.6 944,504 - -1.5 944,506 + -2.7 944,558 + H281DRAFT_00854 0.10 -1.4 944,559 - H281DRAFT_00854 0.10 -3.4 944,579 + H281DRAFT_00854 0.13 -0.6 944,580 - H281DRAFT_00854 0.14 -1.1 944,580 - H281DRAFT_00854 0.14 -1.3 944,789 + H281DRAFT_00854 0.47 -3.2 944,789 + H281DRAFT_00854 0.47 -1.7 944,789 + H281DRAFT_00854 0.47 -4.5 944,790 - H281DRAFT_00854 0.47 -2.8 944,790 - H281DRAFT_00854 0.47 -3.2 944,858 + H281DRAFT_00854 0.58 +0.2 944,942 + H281DRAFT_00854 0.72 -1.5 944,943 - H281DRAFT_00854 0.72 -3.1 945,230 - +0.9 945,345 - -0.7 945,360 - +0.5
Or see this region's nucleotide sequence