Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0882

Experiment: 1-ethyl-3-methylimidazolium chloride 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0881 and Ga0059261_0882 are separated by 160 nucleotidesGa0059261_0882 and Ga0059261_0883 overlap by 23 nucleotidesGa0059261_0883 and Ga0059261_0884 are separated by 72 nucleotides Ga0059261_0881: Ga0059261_0881 - tRNA and rRNA cytosine-C5-methylases, at 921,838 to 923,022 _0881 Ga0059261_0882: Ga0059261_0882 - Predicted membrane protein, at 923,183 to 924,352 _0882 Ga0059261_0883: Ga0059261_0883 - hypothetical protein, at 924,330 to 925,121 _0883 Ga0059261_0884: Ga0059261_0884 - Transcriptional regulator, at 925,194 to 926,099 _0884 Position (kb) 923 924 925Strain fitness (log2 ratio) -2 -1 0 1 2at 922.484 kb on + strand, within Ga0059261_0881at 922.484 kb on + strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.752 kb on - strandat 922.752 kb on - strand, within Ga0059261_0881at 922.902 kb on - strandat 922.902 kb on - strand, within Ga0059261_0881at 923.004 kb on + strandat 923.142 kb on + strandat 923.143 kb on - strandat 923.357 kb on + strand, within Ga0059261_0882at 923.357 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strandat 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.547 kb on + strand, within Ga0059261_0882at 923.574 kb on + strand, within Ga0059261_0882at 923.627 kb on + strand, within Ga0059261_0882at 923.628 kb on - strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.658 kb on - strand, within Ga0059261_0882at 923.672 kb on + strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.731 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.908 kb on + strand, within Ga0059261_0882at 923.909 kb on - strand, within Ga0059261_0882at 923.954 kb on + strand, within Ga0059261_0882at 923.955 kb on - strand, within Ga0059261_0882at 923.955 kb on - strand, within Ga0059261_0882at 924.015 kb on - strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.108 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.150 kb on - strand, within Ga0059261_0882at 924.150 kb on - strand, within Ga0059261_0882at 924.359 kb on - strandat 924.359 kb on - strandat 924.479 kb on - strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.572 kb on - strand, within Ga0059261_0883at 924.572 kb on - strand, within Ga0059261_0883at 924.572 kb on - strand, within Ga0059261_0883at 924.592 kb on + strand, within Ga0059261_0883at 924.593 kb on - strand, within Ga0059261_0883at 924.593 kb on - strand, within Ga0059261_0883at 924.593 kb on - strand, within Ga0059261_0883at 924.619 kb on + strand, within Ga0059261_0883at 924.620 kb on - strand, within Ga0059261_0883at 924.620 kb on - strand, within Ga0059261_0883at 924.701 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.772 kb on - strand, within Ga0059261_0883at 924.772 kb on - strand, within Ga0059261_0883at 924.899 kb on + strand, within Ga0059261_0883at 924.900 kb on - strand, within Ga0059261_0883at 924.983 kb on + strand, within Ga0059261_0883at 924.984 kb on - strand, within Ga0059261_0883at 924.984 kb on - strand, within Ga0059261_0883at 924.987 kb on - strand, within Ga0059261_0883at 925.162 kb on + strandat 925.162 kb on + strandat 925.162 kb on + strandat 925.173 kb on + strandat 925.173 kb on + strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.179 kb on + strandat 925.179 kb on + strandat 925.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 20 mM
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922,484 + Ga0059261_0881 0.55 +0.5
922,484 + Ga0059261_0881 0.55 +0.7
922,485 - Ga0059261_0881 0.55 +0.1
922,485 - Ga0059261_0881 0.55 -0.1
922,485 - Ga0059261_0881 0.55 -0.2
922,752 - +1.9
922,752 - Ga0059261_0881 0.77 -0.4
922,902 - +1.5
922,902 - Ga0059261_0881 0.90 +0.0
923,004 + -0.5
923,142 + +0.1
923,143 - -0.3
923,357 + Ga0059261_0882 0.15 -0.2
923,357 + Ga0059261_0882 0.15 +0.2
923,420 + Ga0059261_0882 0.20 -1.4
923,420 + Ga0059261_0882 0.20 +0.3
923,420 + Ga0059261_0882 0.20 -0.4
923,421 - Ga0059261_0882 0.20 +1.0
923,421 - Ga0059261_0882 0.20 +0.2
923,421 - -0.4
923,421 - Ga0059261_0882 0.20 +0.6
923,421 - Ga0059261_0882 0.20 +0.1
923,421 - Ga0059261_0882 0.20 +0.2
923,461 + Ga0059261_0882 0.24 +0.3
923,461 + Ga0059261_0882 0.24 +0.1
923,461 + Ga0059261_0882 0.24 +0.1
923,462 - Ga0059261_0882 0.24 +0.4
923,462 - Ga0059261_0882 0.24 +0.2
923,462 - Ga0059261_0882 0.24 +0.4
923,544 - Ga0059261_0882 0.31 -0.9
923,544 - Ga0059261_0882 0.31 +1.1
923,544 - Ga0059261_0882 0.31 +0.4
923,547 + Ga0059261_0882 0.31 +0.1
923,574 + Ga0059261_0882 0.33 -0.4
923,627 + Ga0059261_0882 0.38 +0.3
923,628 - Ga0059261_0882 0.38 +0.1
923,657 + Ga0059261_0882 0.41 +0.4
923,657 + Ga0059261_0882 0.41 -0.2
923,657 + Ga0059261_0882 0.41 -0.5
923,657 + Ga0059261_0882 0.41 +0.1
923,657 + Ga0059261_0882 0.41 +0.4
923,657 + Ga0059261_0882 0.41 -0.8
923,658 - Ga0059261_0882 0.41 -0.2
923,672 + Ga0059261_0882 0.42 +0.2
923,673 - Ga0059261_0882 0.42 -0.2
923,673 - Ga0059261_0882 0.42 +0.0
923,673 - Ga0059261_0882 0.42 +0.3
923,731 + Ga0059261_0882 0.47 +1.3
923,794 + Ga0059261_0882 0.52 -0.4
923,794 + Ga0059261_0882 0.52 -0.2
923,794 + Ga0059261_0882 0.52 +0.7
923,794 + Ga0059261_0882 0.52 -0.7
923,794 + Ga0059261_0882 0.52 -0.6
923,795 - Ga0059261_0882 0.52 -0.0
923,795 - Ga0059261_0882 0.52 -0.1
923,795 - Ga0059261_0882 0.52 +0.1
923,795 - Ga0059261_0882 0.52 +0.6
923,795 - Ga0059261_0882 0.52 -0.3
923,795 - Ga0059261_0882 0.52 +0.8
923,795 - Ga0059261_0882 0.52 -0.5
923,795 - Ga0059261_0882 0.52 +0.1
923,795 - Ga0059261_0882 0.52 +0.5
923,908 + Ga0059261_0882 0.62 -0.0
923,909 - Ga0059261_0882 0.62 +0.3
923,954 + Ga0059261_0882 0.66 -0.0
923,955 - Ga0059261_0882 0.66 -0.6
923,955 - Ga0059261_0882 0.66 -0.1
924,015 - Ga0059261_0882 0.71 -0.1
924,022 + Ga0059261_0882 0.72 -0.4
924,022 + Ga0059261_0882 0.72 +1.5
924,022 + Ga0059261_0882 0.72 -2.1
924,022 + Ga0059261_0882 0.72 +0.4
924,022 + Ga0059261_0882 0.72 +0.8
924,022 + Ga0059261_0882 0.72 -0.4
924,022 + Ga0059261_0882 0.72 -0.8
924,023 - Ga0059261_0882 0.72 -0.2
924,023 - Ga0059261_0882 0.72 -0.3
924,023 - Ga0059261_0882 0.72 -0.7
924,023 - Ga0059261_0882 0.72 -0.2
924,023 - Ga0059261_0882 0.72 +1.1
924,023 - Ga0059261_0882 0.72 +0.6
924,023 - Ga0059261_0882 0.72 -0.4
924,023 - Ga0059261_0882 0.72 +0.5
924,023 - Ga0059261_0882 0.72 +0.3
924,108 + Ga0059261_0882 0.79 +0.4
924,149 + Ga0059261_0882 0.83 -1.1
924,149 + Ga0059261_0882 0.83 +0.6
924,149 + Ga0059261_0882 0.83 +0.7
924,149 + Ga0059261_0882 0.83 -0.5
924,150 - Ga0059261_0882 0.83 +0.4
924,150 - Ga0059261_0882 0.83 +0.2
924,359 - -1.0
924,359 - -0.1
924,479 - Ga0059261_0883 0.19 +0.3
924,571 + Ga0059261_0883 0.30 +0.1
924,571 + Ga0059261_0883 0.30 +2.5
924,571 + Ga0059261_0883 0.30 -1.0
924,571 + Ga0059261_0883 0.30 -0.6
924,572 - Ga0059261_0883 0.31 +0.3
924,572 - Ga0059261_0883 0.31 +0.2
924,572 - Ga0059261_0883 0.31 -1.2
924,592 + Ga0059261_0883 0.33 -0.2
924,593 - Ga0059261_0883 0.33 -0.4
924,593 - Ga0059261_0883 0.33 -0.4
924,593 - Ga0059261_0883 0.33 -0.6
924,619 + Ga0059261_0883 0.36 +0.3
924,620 - Ga0059261_0883 0.37 -0.3
924,620 - Ga0059261_0883 0.37 +0.4
924,701 + Ga0059261_0883 0.47 +0.6
924,771 + Ga0059261_0883 0.56 -0.3
924,771 + Ga0059261_0883 0.56 +0.3
924,771 + Ga0059261_0883 0.56 +0.4
924,771 + Ga0059261_0883 0.56 +0.9
924,771 + Ga0059261_0883 0.56 -0.8
924,772 - Ga0059261_0883 0.56 -0.6
924,772 - Ga0059261_0883 0.56 -0.4
924,899 + Ga0059261_0883 0.72 -0.1
924,900 - Ga0059261_0883 0.72 -0.1
924,983 + Ga0059261_0883 0.82 +0.4
924,984 - Ga0059261_0883 0.83 -0.5
924,984 - Ga0059261_0883 0.83 -0.4
924,987 - Ga0059261_0883 0.83 +0.1
925,162 + +0.5
925,162 + -0.5
925,162 + -0.1
925,173 + -0.1
925,173 + -0.5
925,174 - -0.1
925,174 - +0.2
925,174 - +0.9
925,174 - -0.4
925,174 - +0.3
925,174 - -0.6
925,179 + -0.1
925,179 + +0.5
925,180 - +1.4

Or see this region's nucleotide sequence