Experiment: 1-ethyl-3-methylimidazolium chloride 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0610 and Ga0059261_0611 are separated by 345 nucleotides Ga0059261_0611 and Ga0059261_0612 are separated by 100 nucleotides Ga0059261_0612 and Ga0059261_0613 are separated by 27 nucleotides
Ga0059261_0610: Ga0059261_0610 - HpcH/HpaI aldolase/citrate lyase family, at 645,079 to 645,891
_0610
Ga0059261_0611: Ga0059261_0611 - Peptidase family M23, at 646,237 to 646,695
_0611
Ga0059261_0612: Ga0059261_0612 - RNA polymerase sigma factor, sigma-70 family, at 646,796 to 647,311
_0612
Ga0059261_0613: Ga0059261_0613 - FecR family protein, at 647,339 to 648,304
_0613
Position (kb) 646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 645.837 kb on - strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.921 kb on - strand at 645.921 kb on - strand at 645.921 kb on - strand at 645.921 kb on - strand at 645.960 kb on + strand at 646.079 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.725 kb on - strand at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 647.338 kb on + strand at 648.044 kb on - strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.081 kb on - strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.175 kb on + strand at 648.176 kb on - strand, within Ga0059261_0613 at 648.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 20 mM remove 645,837 - -0.1 645,920 + +0.1 645,920 + +0.2 645,920 + +0.7 645,920 + -0.3 645,920 + +0.2 645,920 + -0.6 645,921 - -0.2 645,921 - +0.5 645,921 - -1.1 645,921 - -1.1 645,960 + +0.2 646,079 + +0.5 646,688 + +0.7 646,688 + -0.4 646,688 + +0.6 646,688 + +0.3 646,688 - +0.7 646,689 - -0.4 646,689 - +0.3 646,689 - -0.5 646,699 + -0.2 646,699 + +0.8 646,699 + -0.7 646,699 + +0.3 646,699 + +0.6 646,699 + +0.5 646,700 - -0.1 646,700 - -1.3 646,700 - +0.5 646,724 + +1.7 646,724 + +0.5 646,724 + -0.2 646,725 - +0.2 646,970 + Ga0059261_0612 0.34 -0.5 646,970 + Ga0059261_0612 0.34 -0.0 646,970 + Ga0059261_0612 0.34 -1.1 646,971 - Ga0059261_0612 0.34 -0.3 646,971 - Ga0059261_0612 0.34 -0.1 646,971 - Ga0059261_0612 0.34 -1.3 646,971 - Ga0059261_0612 0.34 -0.5 646,971 - Ga0059261_0612 0.34 -0.6 647,338 + -1.9 648,044 - Ga0059261_0613 0.73 -2.8 648,080 + Ga0059261_0613 0.77 -1.7 648,080 + Ga0059261_0613 0.77 -1.3 648,081 - Ga0059261_0613 0.77 -1.6 648,083 + +1.0 648,083 + Ga0059261_0613 0.77 -2.3 648,083 + Ga0059261_0613 0.77 -0.6 648,083 + Ga0059261_0613 0.77 -2.5 648,083 + -1.3 648,083 + Ga0059261_0613 0.77 -2.5 648,173 + Ga0059261_0613 0.86 -1.0 648,173 + Ga0059261_0613 0.86 -0.4 648,174 - Ga0059261_0613 0.86 -3.2 648,174 - Ga0059261_0613 0.86 -1.7 648,174 - Ga0059261_0613 0.86 -0.6 648,175 + -0.0 648,176 - Ga0059261_0613 0.87 -2.3 648,274 - +1.0
Or see this region's nucleotide sequence