Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03332

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03330 and CCNA_03331 overlap by 4 nucleotidesCCNA_03331 and CCNA_03332 are separated by 52 nucleotidesCCNA_03332 and CCNA_03333 are separated by 10 nucleotides CCNA_03330: CCNA_03330 - hypothetical protein, at 3,509,997 to 3,510,581 _03330 CCNA_03331: CCNA_03331 - phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase, at 3,510,578 to 3,511,381 _03331 CCNA_03332: CCNA_03332 - dihydropteroate synthase, at 3,511,434 to 3,512,258 _03332 CCNA_03333: CCNA_03333 - PAS-family sensor histidine kinase, at 3,512,269 to 3,514,662 _03333 Position (kb) 3511 3512 3513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3510.441 kb on + strand, within CCNA_03330at 3510.461 kb on - strand, within CCNA_03330at 3510.510 kb on + strand, within CCNA_03330at 3510.516 kb on - strand, within CCNA_03330at 3510.516 kb on - strand, within CCNA_03330at 3510.571 kb on - strandat 3510.591 kb on + strandat 3510.599 kb on - strandat 3510.599 kb on - strandat 3510.604 kb on - strandat 3511.371 kb on + strandat 3511.431 kb on + strandat 3511.431 kb on + strandat 3511.439 kb on - strandat 3511.439 kb on - strandat 3511.440 kb on - strandat 3512.253 kb on + strandat 3512.260 kb on + strandat 3512.266 kb on + strandat 3512.267 kb on + strandat 3512.267 kb on + strandat 3512.267 kb on + strandat 3512.268 kb on - strandat 3512.275 kb on - strandat 3512.283 kb on + strandat 3512.288 kb on + strandat 3512.291 kb on - strandat 3512.318 kb on + strandat 3512.324 kb on - strandat 3512.331 kb on - strandat 3512.337 kb on + strandat 3512.364 kb on + strandat 3512.365 kb on + strandat 3512.373 kb on - strandat 3512.398 kb on + strandat 3512.472 kb on - strandat 3512.472 kb on - strandat 3512.501 kb on - strandat 3512.521 kb on + strand, within CCNA_03333at 3512.545 kb on - strand, within CCNA_03333at 3512.552 kb on + strand, within CCNA_03333at 3512.555 kb on - strand, within CCNA_03333at 3512.555 kb on - strand, within CCNA_03333at 3512.565 kb on - strand, within CCNA_03333at 3512.571 kb on + strand, within CCNA_03333at 3512.571 kb on - strand, within CCNA_03333at 3512.579 kb on - strand, within CCNA_03333at 3512.579 kb on - strand, within CCNA_03333at 3512.628 kb on - strand, within CCNA_03333at 3512.628 kb on - strand, within CCNA_03333at 3512.639 kb on + strand, within CCNA_03333at 3512.639 kb on + strand, within CCNA_03333at 3512.661 kb on + strand, within CCNA_03333at 3512.674 kb on + strand, within CCNA_03333at 3512.674 kb on + strand, within CCNA_03333at 3512.682 kb on - strand, within CCNA_03333at 3512.721 kb on + strand, within CCNA_03333at 3512.721 kb on + strand, within CCNA_03333at 3512.739 kb on + strand, within CCNA_03333at 3512.739 kb on + strand, within CCNA_03333at 3512.739 kb on + strand, within CCNA_03333at 3512.747 kb on - strand, within CCNA_03333at 3512.783 kb on + strand, within CCNA_03333at 3512.790 kb on - strand, within CCNA_03333at 3512.790 kb on - strand, within CCNA_03333at 3512.800 kb on + strand, within CCNA_03333at 3512.820 kb on - strand, within CCNA_03333at 3512.834 kb on - strand, within CCNA_03333at 3512.880 kb on - strand, within CCNA_03333at 3512.910 kb on - strand, within CCNA_03333at 3512.910 kb on - strand, within CCNA_03333at 3512.912 kb on - strand, within CCNA_03333at 3512.993 kb on - strand, within CCNA_03333at 3513.023 kb on - strand, within CCNA_03333at 3513.034 kb on - strand, within CCNA_03333at 3513.060 kb on + strand, within CCNA_03333at 3513.071 kb on + strand, within CCNA_03333at 3513.079 kb on - strand, within CCNA_03333at 3513.079 kb on - strand, within CCNA_03333at 3513.122 kb on - strand, within CCNA_03333at 3513.160 kb on + strand, within CCNA_03333at 3513.163 kb on - strand, within CCNA_03333at 3513.174 kb on + strand, within CCNA_03333at 3513.220 kb on + strand, within CCNA_03333at 3513.228 kb on - strand, within CCNA_03333at 3513.228 kb on - strand, within CCNA_03333at 3513.250 kb on - strand, within CCNA_03333

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,510,441 + CCNA_03330 0.76 -1.4
3,510,461 - CCNA_03330 0.79 +0.6
3,510,510 + CCNA_03330 0.88 -0.2
3,510,516 - CCNA_03330 0.89 -1.6
3,510,516 - CCNA_03330 0.89 +0.4
3,510,571 - -0.9
3,510,591 + -1.5
3,510,599 - -1.0
3,510,599 - -1.0
3,510,604 - +0.4
3,511,371 + -0.6
3,511,431 + -1.4
3,511,431 + +3.6
3,511,439 - -0.5
3,511,439 - +1.2
3,511,440 - -2.9
3,512,253 + +2.4
3,512,260 + -1.2
3,512,266 + -1.7
3,512,267 + -2.0
3,512,267 + -2.5
3,512,267 + +0.1
3,512,268 - +0.6
3,512,275 - +0.7
3,512,283 + +1.6
3,512,288 + -0.3
3,512,291 - -0.2
3,512,318 + -0.2
3,512,324 - -1.5
3,512,331 - +0.9
3,512,337 + -1.0
3,512,364 + -2.2
3,512,365 + -0.7
3,512,373 - -2.3
3,512,398 + -1.6
3,512,472 - -1.1
3,512,472 - +0.3
3,512,501 - +0.7
3,512,521 + CCNA_03333 0.11 -1.0
3,512,545 - CCNA_03333 0.12 +1.4
3,512,552 + CCNA_03333 0.12 -2.6
3,512,555 - CCNA_03333 0.12 +0.6
3,512,555 - CCNA_03333 0.12 -0.0
3,512,565 - CCNA_03333 0.12 -2.8
3,512,571 + CCNA_03333 0.13 +0.4
3,512,571 - CCNA_03333 0.13 -0.7
3,512,579 - CCNA_03333 0.13 +0.7
3,512,579 - CCNA_03333 0.13 -1.0
3,512,628 - CCNA_03333 0.15 +0.5
3,512,628 - CCNA_03333 0.15 -1.8
3,512,639 + CCNA_03333 0.15 -0.5
3,512,639 + CCNA_03333 0.15 +0.5
3,512,661 + CCNA_03333 0.16 -3.9
3,512,674 + CCNA_03333 0.17 -2.6
3,512,674 + CCNA_03333 0.17 -1.2
3,512,682 - CCNA_03333 0.17 +0.4
3,512,721 + CCNA_03333 0.19 -0.4
3,512,721 + CCNA_03333 0.19 -2.7
3,512,739 + CCNA_03333 0.20 +0.3
3,512,739 + CCNA_03333 0.20 -1.5
3,512,739 + CCNA_03333 0.20 +2.9
3,512,747 - CCNA_03333 0.20 +1.4
3,512,783 + CCNA_03333 0.21 -3.4
3,512,790 - CCNA_03333 0.22 +4.1
3,512,790 - CCNA_03333 0.22 +0.1
3,512,800 + CCNA_03333 0.22 -0.9
3,512,820 - CCNA_03333 0.23 +0.8
3,512,834 - CCNA_03333 0.24 +3.2
3,512,880 - CCNA_03333 0.26 +1.6
3,512,910 - CCNA_03333 0.27 -1.0
3,512,910 - CCNA_03333 0.27 +0.4
3,512,912 - CCNA_03333 0.27 +0.5
3,512,993 - CCNA_03333 0.30 -1.8
3,513,023 - CCNA_03333 0.31 +0.9
3,513,034 - CCNA_03333 0.32 +0.2
3,513,060 + CCNA_03333 0.33 +1.7
3,513,071 + CCNA_03333 0.34 -0.6
3,513,079 - CCNA_03333 0.34 +1.6
3,513,079 - CCNA_03333 0.34 -0.3
3,513,122 - CCNA_03333 0.36 -4.4
3,513,160 + CCNA_03333 0.37 +0.6
3,513,163 - CCNA_03333 0.37 -0.0
3,513,174 + CCNA_03333 0.38 -0.4
3,513,220 + CCNA_03333 0.40 -0.3
3,513,228 - CCNA_03333 0.40 +3.3
3,513,228 - CCNA_03333 0.40 -2.2
3,513,250 - CCNA_03333 0.41 +0.7

Or see this region's nucleotide sequence