Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03285

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
3,453,945	+				+0.7
3,453,950	+				+0.7
3,453,950	+				-1.5
3,453,950	+				-0.7
3,453,950	+				+1.5
3,453,950	+				+1.6
3,453,950	+				+0.6
3,453,950	+				+0.5
3,453,950	+				+1.3
3,453,950	+				-1.0
3,453,950	+				+0.2
3,453,950	+				+1.3
3,453,950	+				-1.0
3,453,950	+				+1.2
3,453,950	+				+0.5
3,453,950	+				-0.6
3,453,950	+				+2.9
3,453,950	+				+2.8
3,453,958	-				+1.7
3,453,958	-				-0.2
3,453,958	-				+0.2
3,453,958	-				+0.2
3,453,958	-				+1.1
3,453,958	-				-0.1
3,453,958	-				-1.0
3,453,958	-				-1.4
3,453,958	-				+1.1
3,453,958	-				-0.5
3,453,958	-				-0.9
3,453,958	-				-3.1
3,453,983	-				-1.5
3,453,985	+				+2.2
3,453,986	+				-0.2
3,453,986	+				+0.6
3,453,994	-				-2.4
3,454,003	+		CCNA_03284	0.10	+1.2
3,454,011	-		CCNA_03284	0.11	-2.2
3,454,032	+		CCNA_03284	0.13	+0.0
3,454,032	+		CCNA_03284	0.13	+1.5
3,454,032	+		CCNA_03284	0.13	+2.3
3,454,040	-		CCNA_03284	0.14	+1.3
3,454,040	-		CCNA_03284	0.14	-1.0
3,454,058	-		CCNA_03284	0.16	-2.0
3,454,068	+		CCNA_03284	0.17	+0.7
3,454,068	+		CCNA_03284	0.17	+1.0
3,454,068	+		CCNA_03284	0.17	-0.0
3,454,068	+		CCNA_03284	0.17	+1.2
3,454,068	+		CCNA_03284	0.17	+2.1
3,454,078	+		CCNA_03284	0.17	-0.5
3,454,083	+		CCNA_03284	0.18	+0.8
3,454,086	+		CCNA_03284	0.18	+1.0
3,454,096	+		CCNA_03284	0.19	+1.2
3,454,105	+		CCNA_03284	0.20	-0.7
3,454,105	+		CCNA_03284	0.20	-0.3
3,454,105	+		CCNA_03284	0.20	+1.0
3,454,113	-		CCNA_03284	0.21	+0.1
3,454,163	+		CCNA_03284	0.26	+1.6
3,454,163	+		CCNA_03284	0.26	-2.2
3,454,171	-		CCNA_03284	0.26	+0.7
3,454,216	-		CCNA_03284	0.31	-0.8
3,454,221	+		CCNA_03284	0.31	-1.9
3,454,221	-		CCNA_03284	0.31	-1.5
3,454,226	+		CCNA_03284	0.32	-2.1
3,454,226	+		CCNA_03284	0.32	+2.1
3,454,226	+		CCNA_03284	0.32	-0.0
3,454,228	+		CCNA_03284	0.32	+0.8
3,454,228	+		CCNA_03284	0.32	+1.8
3,454,234	-		CCNA_03284	0.33	+0.4
3,454,234	-		CCNA_03284	0.33	+0.6
3,454,234	-		CCNA_03284	0.33	-2.2
3,454,236	-		CCNA_03284	0.33	+0.7
3,454,248	+		CCNA_03284	0.34	+0.3
3,454,248	+		CCNA_03284	0.34	+0.5
3,454,256	-		CCNA_03284	0.35	+0.6
3,454,256	-		CCNA_03284	0.35	-0.8
3,454,260	+		CCNA_03284	0.35	+0.8
3,454,272	+		CCNA_03284	0.36	-2.0
3,454,282	+		CCNA_03284	0.37	-1.2
3,454,290	-		CCNA_03284	0.38	-0.5
3,454,315	+		CCNA_03284	0.40	+0.4
3,454,315	+		CCNA_03284	0.40	-0.2
3,454,315	+		CCNA_03284	0.40	+1.3
3,454,323	-		CCNA_03284	0.41	-1.8
3,454,323	-		CCNA_03284	0.41	-1.7
3,454,323	-		CCNA_03284	0.41	+2.4
3,454,325	+		CCNA_03284	0.41	-1.3
3,454,338	+		CCNA_03284	0.43	+0.1
3,454,348	+		CCNA_03284	0.44	-2.8
3,454,348	+		CCNA_03284	0.44	+1.2
3,454,372	+		CCNA_03284	0.46	-0.4
3,454,372	+		CCNA_03284	0.46	+1.0
3,454,372	+		CCNA_03284	0.46	+2.2
3,454,372	+		CCNA_03284	0.46	+0.8
3,454,372	+		CCNA_03284	0.46	+0.0
3,454,380	-		CCNA_03284	0.47	-0.9
3,454,382	+		CCNA_03284	0.47	+2.0
3,454,382	+		CCNA_03284	0.47	+0.2
3,454,382	+		CCNA_03284	0.47	+0.0
3,454,382	+		CCNA_03284	0.47	+0.9
3,454,382	+		CCNA_03284	0.47	+0.8
3,454,382	+		CCNA_03284	0.47	-0.4
3,454,390	-		CCNA_03284	0.48	-1.4
3,454,416	+		CCNA_03284	0.50	+2.7
3,454,416	+		CCNA_03284	0.50	-2.0
3,454,416	+		CCNA_03284	0.50	+0.8
3,454,416	+		CCNA_03284	0.50	-1.8
3,454,416	+		CCNA_03284	0.50	-0.2
3,454,416	+		CCNA_03284	0.50	+0.9
3,454,421	+		CCNA_03284	0.51	+0.2
3,454,421	+		CCNA_03284	0.51	-3.5
3,454,424	-		CCNA_03284	0.51	-2.0
3,454,424	-		CCNA_03284	0.51	+1.9
3,454,424	-		CCNA_03284	0.51	+0.0
3,454,424	-		CCNA_03284	0.51	+1.1
3,454,424	-		CCNA_03284	0.51	-1.8
3,454,424	-		CCNA_03284	0.51	-1.0
3,454,424	-		CCNA_03284	0.51	+1.1
3,454,426	+		CCNA_03284	0.51	+0.2
3,454,426	+		CCNA_03284	0.51	-1.9
3,454,429	-		CCNA_03284	0.51	-2.2
3,454,434	-		CCNA_03284	0.52	-0.5
3,454,434	-		CCNA_03284	0.52	+1.6
3,454,467	+		CCNA_03284	0.55	+0.1
3,454,536	+		CCNA_03284	0.62	+1.4
3,454,556	+		CCNA_03284	0.64	+0.3
3,454,556	+		CCNA_03284	0.64	-1.0
3,454,562	+		CCNA_03284	0.64	-2.7
3,454,564	-		CCNA_03284	0.64	+0.3
3,454,564	-		CCNA_03284	0.64	+0.9
3,454,588	-		CCNA_03284	0.67	+0.6
3,454,608	-		CCNA_03284	0.69	-0.6
3,454,628	+		CCNA_03284	0.71	-1.5
3,454,630	-		CCNA_03284	0.71	-0.7
3,454,633	+		CCNA_03284	0.71	-1.5
3,454,639	+		CCNA_03284	0.72	-0.4
3,454,639	+		CCNA_03284	0.72	-0.7
3,454,646	+		CCNA_03284	0.72	+0.5
3,454,657	-		CCNA_03284	0.73	-1.3
3,454,663	+		CCNA_03284	0.74	+0.2
3,454,663	+		CCNA_03284	0.74	+2.1
3,454,670	+		CCNA_03284	0.75	+1.7
3,454,695	-		CCNA_03284	0.77	+0.2
3,454,695	-		CCNA_03284	0.77	-0.2
3,454,695	-		CCNA_03284	0.77	+1.9
3,454,722	-		CCNA_03284	0.80	+3.8
3,454,759	-		CCNA_03284	0.83	-0.8
3,454,762	+		CCNA_03284	0.84	+0.0
3,454,762	+		CCNA_03284	0.84	-1.5
3,454,807	+		CCNA_03284	0.88	+0.4
3,454,812	+		CCNA_03284	0.88	+1.9
3,454,812	+		CCNA_03284	0.88	-1.5
3,454,812	+		CCNA_03284	0.88	-2.9
3,454,812	+		CCNA_03284	0.88	-0.2
3,454,815	-		CCNA_03284	0.89	-0.3
3,454,831	+				+1.0
3,454,831	+				-0.0
3,454,839	-				-1.2
3,454,839	-				-2.2
3,454,842	+				+0.6
3,454,850	+				+1.6
3,454,850	-				-1.2
3,454,866	+				+0.3
3,454,874	-				-1.5
3,454,895	-				-1.2
3,454,925	+				-1.6
3,454,933	-				-0.1
3,454,940	+				-0.4
3,454,940	+				-0.5
3,454,948	-				-1.8
3,454,991	+				-0.6
3,454,996	+				+0.1
3,455,009	-				+0.6
3,455,059	-		CCNA_03285	0.12	+1.3
3,455,060	+		CCNA_03285	0.12	+0.4
3,455,079	-		CCNA_03285	0.14	-0.1
3,455,096	+		CCNA_03285	0.16	+0.5
3,455,096	+		CCNA_03285	0.16	-0.8
3,455,101	+		CCNA_03285	0.16	+0.5
3,455,103	-		CCNA_03285	0.17	-1.5
3,455,104	-		CCNA_03285	0.17	-0.7
3,455,140	+		CCNA_03285	0.20	-1.6
3,455,162	-		CCNA_03285	0.23	+2.1
3,455,173	-		CCNA_03285	0.24	+2.9
3,455,178	-		CCNA_03285	0.24	-1.4
3,455,187	+		CCNA_03285	0.25	-2.6
3,455,187	+		CCNA_03285	0.25	+1.4
3,455,187	+		CCNA_03285	0.25	+1.4
3,455,187	+		CCNA_03285	0.25	-2.2
3,455,195	-		CCNA_03285	0.26	+1.0
3,455,200	+		CCNA_03285	0.27	+1.9
3,455,202	+		CCNA_03285	0.27	+2.2
3,455,202	+		CCNA_03285	0.27	+0.9
3,455,210	-		CCNA_03285	0.28	-2.0
3,455,210	-		CCNA_03285	0.28	+3.3
3,455,210	-		CCNA_03285	0.28	+0.6
3,455,210	-		CCNA_03285	0.28	+2.1
3,455,210	-		CCNA_03285	0.28	-1.6
3,455,210	-		CCNA_03285	0.28	+0.9
3,455,210	-		CCNA_03285	0.28	-3.6
3,455,210	-		CCNA_03285	0.28	-1.1
3,455,259	+		CCNA_03285	0.33	-0.1
3,455,280	-		CCNA_03285	0.35	+4.6
3,455,284	+		CCNA_03285	0.35	-1.4
3,455,289	+		CCNA_03285	0.36	-0.2
3,455,289	+		CCNA_03285	0.36	+1.3
3,455,292	-		CCNA_03285	0.36	-2.2
3,455,297	-		CCNA_03285	0.37	-0.4
3,455,297	-		CCNA_03285	0.37	-0.1
3,455,313	+		CCNA_03285	0.38	+1.5
3,455,321	-		CCNA_03285	0.39	+1.3
3,455,336	-		CCNA_03285	0.41	+2.9
3,455,351	+		CCNA_03285	0.42	+0.5
3,455,351	+		CCNA_03285	0.42	+0.7
3,455,351	+		CCNA_03285	0.42	+0.2
3,455,353	-		CCNA_03285	0.42	+2.2
3,455,359	-		CCNA_03285	0.43	+0.9
3,455,368	+		CCNA_03285	0.44	-1.4
3,455,368	+		CCNA_03285	0.44	-1.0
3,455,368	+		CCNA_03285	0.44	+2.1
3,455,368	+		CCNA_03285	0.44	-0.9
3,455,368	+		CCNA_03285	0.44	+0.8
3,455,368	+		CCNA_03285	0.44	-0.7
3,455,381	-		CCNA_03285	0.45	-0.8
3,455,390	+		CCNA_03285	0.46	+0.5
3,455,396	-		CCNA_03285	0.47	+1.4
3,455,398	-		CCNA_03285	0.47	-1.0
3,455,412	+		CCNA_03285	0.49	-0.9
3,455,420	-		CCNA_03285	0.49	+2.1
3,455,420	-		CCNA_03285	0.49	-1.0
3,455,432	+		CCNA_03285	0.51	-2.0
3,455,432	-		CCNA_03285	0.51	+0.3
3,455,432	-		CCNA_03285	0.51	-2.5
3,455,432	-		CCNA_03285	0.51	-2.0
3,455,440	-		CCNA_03285	0.51	-0.7
3,455,484	+		CCNA_03285	0.56	-2.1
3,455,486	+		CCNA_03285	0.56	+0.1
3,455,491	+		CCNA_03285	0.57	+2.4
3,455,494	-		CCNA_03285	0.57	-1.6
3,455,494	-		CCNA_03285	0.57	-2.2
3,455,514	+		CCNA_03285	0.59	+1.1
3,455,580	+		CCNA_03285	0.66	+2.5
3,455,593	+		CCNA_03285	0.67	+0.3
3,455,614	+		CCNA_03285	0.69	+1.9
3,455,614	+		CCNA_03285	0.69	-0.4
3,455,614	+		CCNA_03285	0.69	+1.3
3,455,614	+		CCNA_03285	0.69	-1.4
3,455,614	+		CCNA_03285	0.69	-0.3
3,455,614	+		CCNA_03285	0.69	+2.0
3,455,622	-		CCNA_03285	0.70	+1.6
3,455,622	-				+0.6
3,455,622	-		CCNA_03285	0.70	-2.1
3,455,622	-		CCNA_03285	0.70	-0.2
3,455,629	-		CCNA_03285	0.71	+3.5
3,455,634	-		CCNA_03285	0.71	+2.4
3,455,634	-		CCNA_03285	0.71	+0.3
3,455,665	+		CCNA_03285	0.75	-1.1
3,455,665	+		CCNA_03285	0.75	+1.6
3,455,705	-		CCNA_03285	0.79	-1.3
3,455,820	-				+1.6
3,455,842	-				-1.3
3,455,862	+				+0.4
3,455,870	-				-2.1
3,455,903	+				+3.0
3,455,934	-				+1.7
3,455,971	+		CCNA_03286	0.12	-0.8
3,455,971	+		CCNA_03286	0.12	-0.8
3,455,971	+		CCNA_03286	0.12	-1.7
3,455,996	+		CCNA_03286	0.16	-1.8
3,456,004	-		CCNA_03286	0.17	-0.4
3,456,004	-		CCNA_03286	0.17	+0.8
3,456,004	-		CCNA_03286	0.17	-0.6
3,456,025	+		CCNA_03286	0.20	-2.9
3,456,065	-		CCNA_03286	0.26	-0.0
3,456,143	-		CCNA_03286	0.37	-2.8
3,456,145	+		CCNA_03286	0.38	+1.8
3,456,153	-		CCNA_03286	0.39	+0.7
3,456,154	-		CCNA_03286	0.39	-1.7
3,456,164	+		CCNA_03286	0.41	+1.8
3,456,172	-		CCNA_03286	0.42	+1.2
3,456,185	-		CCNA_03286	0.44	-1.3
3,456,231	+		CCNA_03286	0.50	-0.9
3,456,243	-		CCNA_03286	0.52	-0.2
3,456,254	-		CCNA_03286	0.54	+0.4
3,456,294	+		CCNA_03286	0.60	+1.3
3,456,450	+				-1.4
3,456,450	+				-1.2
3,456,451	+				+1.0
3,456,458	-				-0.4
3,456,528	-				-1.1
3,456,618	-		CCNA_03287	0.59	-1.0
3,456,619	-		CCNA_03287	0.60	+0.2
3,456,619	-		CCNA_03287	0.60	-2.4
3,456,619	-		CCNA_03287	0.60	+0.0
3,456,619	-		CCNA_03287	0.60	-1.2
3,456,620	-		CCNA_03287	0.60	+0.2
3,456,641	-		CCNA_03287	0.67	-1.5
3,456,641	-		CCNA_03287	0.67	-2.4
3,456,666	-		CCNA_03287	0.75	-1.0
3,456,787	-				+1.0
3,456,814	-				-2.7
3,456,825	+				+0.3
3,456,825	+				-0.3
3,456,825	+				-1.4
3,456,825	+				-1.9
3,456,825	+				-1.3
3,456,825	+				-0.6
3,456,825	+				-0.9
3,456,833	-				-1.1
3,456,833	-				-0.8
3,456,851	+		CCNA_03288	0.17	+1.0
3,456,893	-		CCNA_03288	0.40	+0.6
3,456,903	-		CCNA_03288	0.45	+0.6