Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02519 and CCNA_02520 overlap by 1 nucleotides CCNA_02520 and CCNA_02521 are separated by 179 nucleotides CCNA_02521 and CCNA_02522 are separated by 105 nucleotides
CCNA_02519: CCNA_02519 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A, at 2,669,181 to 2,670,650
_02519
CCNA_02520: CCNA_02520 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 2,670,650 to 2,670,937
_02520
CCNA_02521: CCNA_02521 - endonuclease involved in recombination, at 2,671,117 to 2,671,587
_02521
CCNA_02522: CCNA_02522 - hypothetical protein, at 2,671,693 to 2,672,145
_02522
Position (kb)
2670
2671 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2671.007 kb on - strand at 2671.030 kb on + strand at 2671.030 kb on + strand at 2671.038 kb on - strand at 2671.038 kb on - strand at 2671.038 kb on - strand at 2671.038 kb on - strand at 2671.057 kb on + strand at 2671.088 kb on + strand at 2671.088 kb on + strand at 2671.089 kb on + strand at 2671.096 kb on - strand at 2671.096 kb on - strand at 2671.096 kb on - strand at 2671.102 kb on - strand at 2671.102 kb on - strand at 2671.108 kb on - strand at 2671.588 kb on - strand at 2671.591 kb on - strand at 2671.626 kb on + strand at 2671.634 kb on - strand at 2671.634 kb on - strand at 2671.634 kb on - strand at 2671.688 kb on - strand at 2671.698 kb on - strand at 2671.698 kb on - strand at 2671.698 kb on - strand at 2671.744 kb on + strand, within CCNA_02522 at 2671.744 kb on + strand, within CCNA_02522 at 2671.744 kb on + strand, within CCNA_02522 at 2671.744 kb on + strand, within CCNA_02522 at 2671.766 kb on - strand, within CCNA_02522 at 2671.783 kb on + strand, within CCNA_02522 at 2671.788 kb on - strand, within CCNA_02522 at 2671.803 kb on + strand, within CCNA_02522 at 2671.808 kb on + strand, within CCNA_02522 at 2671.824 kb on + strand, within CCNA_02522 at 2671.836 kb on + strand, within CCNA_02522 at 2671.836 kb on + strand, within CCNA_02522 at 2671.836 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.839 kb on + strand, within CCNA_02522 at 2671.839 kb on + strand, within CCNA_02522 at 2671.839 kb on + strand, within CCNA_02522 at 2671.844 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.849 kb on + strand, within CCNA_02522 at 2671.852 kb on - strand, within CCNA_02522 at 2671.860 kb on + strand, within CCNA_02522 at 2671.868 kb on - strand, within CCNA_02522 at 2671.887 kb on + strand, within CCNA_02522 at 2671.895 kb on - strand, within CCNA_02522 at 2671.895 kb on - strand, within CCNA_02522 at 2671.928 kb on - strand, within CCNA_02522
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 2,671,007 - +1.6 2,671,030 + +0.8 2,671,030 + +1.6 2,671,038 - +1.1 2,671,038 - +1.4 2,671,038 - +1.4 2,671,038 - -1.2 2,671,057 + -1.6 2,671,088 + -1.0 2,671,088 + -2.2 2,671,089 + -1.2 2,671,096 - -2.0 2,671,096 - +1.4 2,671,096 - +0.9 2,671,102 - +0.8 2,671,102 - -0.1 2,671,108 - -1.8 2,671,588 - -2.0 2,671,591 - +1.1 2,671,626 + -2.7 2,671,634 - +2.0 2,671,634 - +0.2 2,671,634 - -2.9 2,671,688 - -0.6 2,671,698 - -0.0 2,671,698 - +3.0 2,671,698 - +1.2 2,671,744 + CCNA_02522 0.11 -0.8 2,671,744 + CCNA_02522 0.11 -0.5 2,671,744 + CCNA_02522 0.11 -1.5 2,671,744 + CCNA_02522 0.11 -2.2 2,671,766 - CCNA_02522 0.16 -1.0 2,671,783 + CCNA_02522 0.20 +0.3 2,671,788 - CCNA_02522 0.21 +0.8 2,671,803 + CCNA_02522 0.24 -1.3 2,671,808 + CCNA_02522 0.25 +0.6 2,671,824 + CCNA_02522 0.29 +2.5 2,671,836 + CCNA_02522 0.32 -1.9 2,671,836 + CCNA_02522 0.32 +1.3 2,671,836 + CCNA_02522 0.32 +0.1 2,671,837 + CCNA_02522 0.32 +0.1 2,671,837 + CCNA_02522 0.32 +1.2 2,671,837 + CCNA_02522 0.32 -3.3 2,671,837 + CCNA_02522 0.32 -0.6 2,671,839 + CCNA_02522 0.32 -2.2 2,671,839 + CCNA_02522 0.32 -0.2 2,671,839 + CCNA_02522 0.32 -0.9 2,671,844 - CCNA_02522 0.33 +2.2 2,671,845 - CCNA_02522 0.34 -0.8 2,671,845 - CCNA_02522 0.34 +0.9 2,671,845 - CCNA_02522 0.34 +0.8 2,671,845 - CCNA_02522 0.34 -1.9 2,671,845 - CCNA_02522 0.34 +0.1 2,671,845 - CCNA_02522 0.34 -0.6 2,671,845 - CCNA_02522 0.34 -1.4 2,671,845 - CCNA_02522 0.34 -2.8 2,671,849 + CCNA_02522 0.34 +1.7 2,671,852 - CCNA_02522 0.35 -1.2 2,671,860 + CCNA_02522 0.37 -1.8 2,671,868 - CCNA_02522 0.39 -1.7 2,671,887 + CCNA_02522 0.43 +0.0 2,671,895 - CCNA_02522 0.45 +2.2 2,671,895 - CCNA_02522 0.45 -1.3 2,671,928 - CCNA_02522 0.52 -1.3
Or see this region's nucleotide sequence