Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02520

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02519 and CCNA_02520 overlap by 1 nucleotidesCCNA_02520 and CCNA_02521 are separated by 179 nucleotidesCCNA_02521 and CCNA_02522 are separated by 105 nucleotides CCNA_02519: CCNA_02519 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A, at 2,669,181 to 2,670,650 _02519 CCNA_02520: CCNA_02520 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 2,670,650 to 2,670,937 _02520 CCNA_02521: CCNA_02521 - endonuclease involved in recombination, at 2,671,117 to 2,671,587 _02521 CCNA_02522: CCNA_02522 - hypothetical protein, at 2,671,693 to 2,672,145 _02522 Position (kb) 2670 2671Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2671.007 kb on - strandat 2671.030 kb on + strandat 2671.030 kb on + strandat 2671.038 kb on - strandat 2671.038 kb on - strandat 2671.038 kb on - strandat 2671.038 kb on - strandat 2671.057 kb on + strandat 2671.088 kb on + strandat 2671.088 kb on + strandat 2671.089 kb on + strandat 2671.096 kb on - strandat 2671.096 kb on - strandat 2671.096 kb on - strandat 2671.102 kb on - strandat 2671.102 kb on - strandat 2671.108 kb on - strandat 2671.588 kb on - strandat 2671.591 kb on - strandat 2671.626 kb on + strandat 2671.634 kb on - strandat 2671.634 kb on - strandat 2671.634 kb on - strandat 2671.688 kb on - strandat 2671.698 kb on - strandat 2671.698 kb on - strandat 2671.698 kb on - strandat 2671.744 kb on + strand, within CCNA_02522at 2671.744 kb on + strand, within CCNA_02522at 2671.744 kb on + strand, within CCNA_02522at 2671.744 kb on + strand, within CCNA_02522at 2671.766 kb on - strand, within CCNA_02522at 2671.783 kb on + strand, within CCNA_02522at 2671.788 kb on - strand, within CCNA_02522at 2671.803 kb on + strand, within CCNA_02522at 2671.808 kb on + strand, within CCNA_02522at 2671.824 kb on + strand, within CCNA_02522at 2671.836 kb on + strand, within CCNA_02522at 2671.836 kb on + strand, within CCNA_02522at 2671.836 kb on + strand, within CCNA_02522at 2671.837 kb on + strand, within CCNA_02522at 2671.837 kb on + strand, within CCNA_02522at 2671.837 kb on + strand, within CCNA_02522at 2671.837 kb on + strand, within CCNA_02522at 2671.839 kb on + strand, within CCNA_02522at 2671.839 kb on + strand, within CCNA_02522at 2671.839 kb on + strand, within CCNA_02522at 2671.844 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.845 kb on - strand, within CCNA_02522at 2671.849 kb on + strand, within CCNA_02522at 2671.852 kb on - strand, within CCNA_02522at 2671.860 kb on + strand, within CCNA_02522at 2671.868 kb on - strand, within CCNA_02522at 2671.887 kb on + strand, within CCNA_02522at 2671.895 kb on - strand, within CCNA_02522at 2671.895 kb on - strand, within CCNA_02522at 2671.928 kb on - strand, within CCNA_02522

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,671,007 - +1.6
2,671,030 + +0.8
2,671,030 + +1.6
2,671,038 - +1.1
2,671,038 - +1.4
2,671,038 - +1.4
2,671,038 - -1.2
2,671,057 + -1.6
2,671,088 + -1.0
2,671,088 + -2.2
2,671,089 + -1.2
2,671,096 - -2.0
2,671,096 - +1.4
2,671,096 - +0.9
2,671,102 - +0.8
2,671,102 - -0.1
2,671,108 - -1.8
2,671,588 - -2.0
2,671,591 - +1.1
2,671,626 + -2.7
2,671,634 - +2.0
2,671,634 - +0.2
2,671,634 - -2.9
2,671,688 - -0.6
2,671,698 - -0.0
2,671,698 - +3.0
2,671,698 - +1.2
2,671,744 + CCNA_02522 0.11 -0.8
2,671,744 + CCNA_02522 0.11 -0.5
2,671,744 + CCNA_02522 0.11 -1.5
2,671,744 + CCNA_02522 0.11 -2.2
2,671,766 - CCNA_02522 0.16 -1.0
2,671,783 + CCNA_02522 0.20 +0.3
2,671,788 - CCNA_02522 0.21 +0.8
2,671,803 + CCNA_02522 0.24 -1.3
2,671,808 + CCNA_02522 0.25 +0.6
2,671,824 + CCNA_02522 0.29 +2.5
2,671,836 + CCNA_02522 0.32 -1.9
2,671,836 + CCNA_02522 0.32 +1.3
2,671,836 + CCNA_02522 0.32 +0.1
2,671,837 + CCNA_02522 0.32 +0.1
2,671,837 + CCNA_02522 0.32 +1.2
2,671,837 + CCNA_02522 0.32 -3.3
2,671,837 + CCNA_02522 0.32 -0.6
2,671,839 + CCNA_02522 0.32 -2.2
2,671,839 + CCNA_02522 0.32 -0.2
2,671,839 + CCNA_02522 0.32 -0.9
2,671,844 - CCNA_02522 0.33 +2.2
2,671,845 - CCNA_02522 0.34 -0.8
2,671,845 - CCNA_02522 0.34 +0.9
2,671,845 - CCNA_02522 0.34 +0.8
2,671,845 - CCNA_02522 0.34 -1.9
2,671,845 - CCNA_02522 0.34 +0.1
2,671,845 - CCNA_02522 0.34 -0.6
2,671,845 - CCNA_02522 0.34 -1.4
2,671,845 - CCNA_02522 0.34 -2.8
2,671,849 + CCNA_02522 0.34 +1.7
2,671,852 - CCNA_02522 0.35 -1.2
2,671,860 + CCNA_02522 0.37 -1.8
2,671,868 - CCNA_02522 0.39 -1.7
2,671,887 + CCNA_02522 0.43 +0.0
2,671,895 - CCNA_02522 0.45 +2.2
2,671,895 - CCNA_02522 0.45 -1.3
2,671,928 - CCNA_02522 0.52 -1.3

Or see this region's nucleotide sequence